Wall clock time and date at job start Mon Mar 30 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46697 * 2 1 4 4 O 1.21290 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.46861 * 119.99522 * 180.02562 * 3 2 1 6 6 C 1.40049 * 120.11074 * 179.97438 * 5 3 2 7 7 C 1.37114 * 119.88107 * 180.02562 * 6 5 3 8 8 C 1.39085 * 120.11655 * 0.02743 * 7 6 5 9 9 O 1.35663 * 119.88152 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99487 * 185.35377 * 9 8 7 11 11 H 1.08993 * 109.47288 * 35.41269 * 10 9 8 12 12 C 1.53002 * 109.46993 * 275.40758 * 10 9 8 13 13 C 1.53001 * 109.46661 * 155.41054 * 10 9 8 14 14 C 1.50702 * 109.47094 * 294.99567 * 13 10 9 15 15 H 1.07995 * 120.00091 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99691 * 180.02562 * 14 13 10 17 17 N 1.31509 * 119.99669 * 179.72972 * 16 14 13 18 18 Si 1.86798 * 119.99949 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46950 * 269.72574 * 18 16 14 20 20 H 1.48494 * 109.47364 * 29.72521 * 18 16 14 21 21 H 1.48496 * 109.46820 * 149.72813 * 18 16 14 22 22 C 1.39073 * 120.23055 * 0.24334 * 8 7 6 23 23 C 1.37119 * 120.11550 * 359.45461 * 22 8 7 24 24 H 1.09000 * 109.46656 * 60.00449 * 1 2 3 25 25 H 1.09000 * 109.46818 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47396 * 300.00184 * 1 2 3 27 27 H 1.08995 * 109.47452 * 240.00204 * 2 1 3 28 28 H 1.08997 * 109.47383 * 119.99564 * 2 1 3 29 29 H 1.07994 * 120.05498 * 0.03986 * 6 5 3 30 30 H 1.07996 * 119.94499 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46754 * 60.00567 * 12 10 9 32 32 H 1.09000 * 109.46483 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.47153 * 299.99712 * 12 10 9 34 34 H 1.09005 * 109.46741 * 174.99724 * 13 10 9 35 35 H 1.08998 * 109.47061 * 55.00146 * 13 10 9 36 36 H 0.97003 * 120.00208 * 180.27368 * 17 16 14 37 37 H 1.08002 * 119.94334 * 179.72726 * 22 8 7 38 38 H 1.08003 * 120.05959 * 180.27061 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3427 -0.0005 5 6 3.4762 1.6892 -0.0006 6 6 3.9455 3.0087 -0.0011 7 6 5.2946 3.2538 -0.0022 8 6 6.1963 2.1949 -0.0033 9 8 7.5301 2.4429 -0.0049 10 6 8.3994 1.3151 -0.1247 11 1 7.9451 0.5744 -0.7828 12 6 8.6280 0.6982 1.2566 13 6 9.7395 1.7642 -0.7108 14 6 9.5314 2.2586 -2.1191 15 1 8.5423 2.2534 -2.5526 16 6 10.6039 2.7176 -2.8541 17 7 10.4232 3.1441 -4.0850 18 14 12.3149 2.7259 -2.1045 19 1 12.5509 4.0247 -1.4242 20 1 12.4282 1.6223 -1.1174 21 1 13.3256 2.5375 -3.1759 22 6 5.7354 0.8828 -0.0084 23 6 4.3884 0.6267 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.2461 3.8316 -0.0005 30 1 5.6577 4.2709 -0.0022 31 1 7.6733 0.3783 1.6741 32 1 9.2915 -0.1617 1.1652 33 1 9.0825 1.4389 1.9146 34 1 10.4324 0.9228 -0.7198 35 1 10.1518 2.5679 -0.1007 36 1 11.1783 3.4633 -4.6035 37 1 6.4397 0.0640 -0.0137 38 1 4.0315 -0.3927 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:54 Heat of formation + Delta-G solvation = -66.717391 kcal Electronic energy + Delta-G solvation = -19019.934322 eV Core-core repulsion = 16020.386428 eV Total energy + Delta-G solvation = -2999.547895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.28621 -39.25423 -37.05075 -33.65007 -33.06425 -31.94231 -30.88131 -29.96073 -28.10564 -25.34151 -23.37865 -22.91181 -22.26281 -20.09396 -19.48897 -18.07301 -16.83260 -16.64023 -15.87173 -15.52532 -15.00583 -14.72585 -14.53391 -14.08749 -13.57464 -13.52540 -13.30764 -12.88500 -12.60025 -12.39941 -12.30739 -12.14524 -11.98216 -11.86635 -11.82262 -11.33395 -11.29855 -10.80847 -10.73952 -10.22294 -9.94880 -9.70118 -9.64639 -9.31457 -8.99733 -8.60681 -7.94194 -6.09593 -4.08632 0.86056 1.49443 2.52718 3.26021 3.33411 3.33886 3.63978 3.94790 4.03395 4.38439 4.75061 4.88470 4.94567 4.98227 5.12359 5.24018 5.29906 5.39193 5.44442 5.49079 5.58025 5.62721 5.70120 5.74780 5.82117 5.97098 6.00403 6.06510 6.27871 6.28200 6.41854 6.49444 6.53712 6.79256 6.97108 7.08622 7.59103 7.64182 7.88438 8.44355 8.94315 9.50398 11.03761 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034559 B = 0.003920 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.020761 B = 7141.479996 C = 7401.317086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.171 4.171 3 C 0.402 3.598 4 O -0.468 6.468 5 C -0.236 4.236 6 C -0.018 4.018 7 C -0.175 4.175 8 C 0.190 3.810 9 O -0.283 6.283 10 C 0.092 3.908 11 H 0.072 0.928 12 C -0.181 4.181 13 C -0.011 4.011 14 C -0.519 4.519 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.899 5.899 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.266 1.266 21 H -0.287 1.287 22 C -0.232 4.232 23 C -0.029 4.029 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.137 0.863 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 -7.861 10.630 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.282 3.718 4 O -0.345 6.345 5 C -0.237 4.237 6 C -0.037 4.037 7 C -0.194 4.194 8 C 0.141 3.859 9 O -0.194 6.194 10 C 0.037 3.963 11 H 0.090 0.910 12 C -0.239 4.239 13 C -0.048 4.048 14 C -0.557 4.557 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.706 3.294 19 H -0.202 1.202 20 H -0.191 1.191 21 H -0.213 1.213 22 C -0.251 4.251 23 C -0.047 4.047 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.155 0.845 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.770 -7.131 10.483 17.995 hybrid contribution 1.165 -0.216 0.171 1.197 sum -11.605 -7.347 10.654 17.383 Atomic orbital electron populations 1.21584 0.93897 1.01537 1.03003 1.21986 0.98098 0.96290 1.04492 1.22307 0.87946 0.90867 0.70705 1.90493 1.58506 1.47798 1.37740 1.20218 0.94515 0.94346 1.14637 1.21008 0.94583 0.96081 0.92000 1.20355 0.91670 0.98882 1.08475 1.19599 0.84772 0.93159 0.88395 1.86242 1.12120 1.36682 1.84369 1.22702 0.91994 0.86492 0.95138 0.91027 1.22462 1.01824 1.01541 0.98035 1.19750 0.90207 0.97422 0.97417 1.20988 0.96473 1.42307 0.95934 0.90906 1.25000 0.98986 0.94630 0.94715 1.69905 1.31480 1.43060 1.09338 0.86802 0.84481 0.79018 0.79103 1.20167 1.19071 1.21283 1.21236 0.96777 0.96335 1.10708 1.21017 0.92220 0.98287 0.93175 0.92159 0.92251 0.92246 0.88425 0.88550 0.84791 0.84602 0.92765 0.91112 0.91780 0.94336 0.95688 0.92629 0.84543 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 37.16 0.34 -0.89 16 2 C -0.17 -1.50 5.02 -27.88 -0.14 -1.64 16 3 C 0.40 5.05 7.11 -30.82 -0.22 4.83 16 4 O -0.47 -7.20 15.97 5.55 0.09 -7.11 16 5 C -0.24 -3.18 5.87 -105.06 -0.62 -3.79 16 6 C -0.02 -0.27 9.57 -39.31 -0.38 -0.64 16 7 C -0.18 -2.79 9.95 -39.68 -0.39 -3.18 16 8 C 0.19 3.26 6.61 -38.96 -0.26 3.00 16 9 O -0.28 -5.63 9.54 -18.69 -0.18 -5.81 16 10 C 0.09 1.73 2.17 -26.73 -0.06 1.67 16 11 H 0.07 1.31 6.30 -51.93 -0.33 0.99 16 12 C -0.18 -2.64 9.16 37.16 0.34 -2.30 16 13 C -0.01 -0.25 3.75 -27.88 -0.10 -0.35 16 14 C -0.52 -14.45 9.43 -34.44 -0.32 -14.78 16 15 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 18 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.23 -3.36 8.18 -39.68 -0.32 -3.68 16 23 C -0.03 -0.35 9.44 -39.31 -0.37 -0.72 16 24 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.13 1.81 7.64 -52.49 -0.40 1.41 16 30 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.05 0.69 6.88 -51.93 -0.36 0.33 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.84 7.20 -51.93 -0.37 0.47 16 35 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.14 1.81 5.40 -52.49 -0.28 1.53 16 38 H 0.13 1.13 7.04 -52.48 -0.37 0.76 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -31.89 317.78 -7.26 -39.15 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.46 Total: -0.15 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: -2.60 Total: -20.63 kcal Atomic # 7 Polarization: -27.44 SS G_CDS: 0.77 Total: -26.67 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.89 -7.26 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.567 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds