Wall clock time and date at job start Mon Mar 30 2020 06:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46697 * 2 1 4 4 O 1.21290 * 120.00114 * 359.97438 * 3 2 1 5 5 C 1.46861 * 119.99522 * 180.02562 * 3 2 1 6 6 C 1.40049 * 120.11074 * 179.97438 * 5 3 2 7 7 C 1.37114 * 119.88107 * 180.02562 * 6 5 3 8 8 C 1.39085 * 120.11655 * 0.02743 * 7 6 5 9 9 O 1.35663 * 119.88152 * 179.97438 * 8 7 6 10 10 C 1.42905 * 116.99487 * 185.35377 * 9 8 7 11 11 H 1.08993 * 109.47288 * 35.41269 * 10 9 8 12 12 C 1.53002 * 109.46993 * 275.40758 * 10 9 8 13 13 C 1.53001 * 109.46661 * 155.41054 * 10 9 8 14 14 C 1.50702 * 109.47094 * 294.99567 * 13 10 9 15 15 H 1.07995 * 120.00091 * 0.02562 * 14 13 10 16 16 C 1.37885 * 119.99691 * 180.02562 * 14 13 10 17 17 N 1.31509 * 119.99669 * 179.72972 * 16 14 13 18 18 Si 1.86798 * 119.99949 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46950 * 269.72574 * 18 16 14 20 20 H 1.48494 * 109.47364 * 29.72521 * 18 16 14 21 21 H 1.48496 * 109.46820 * 149.72813 * 18 16 14 22 22 C 1.39073 * 120.23055 * 0.24334 * 8 7 6 23 23 C 1.37119 * 120.11550 * 359.45461 * 22 8 7 24 24 H 1.09000 * 109.46656 * 60.00449 * 1 2 3 25 25 H 1.09000 * 109.46818 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47396 * 300.00184 * 1 2 3 27 27 H 1.08995 * 109.47452 * 240.00204 * 2 1 3 28 28 H 1.08997 * 109.47383 * 119.99564 * 2 1 3 29 29 H 1.07994 * 120.05498 * 0.03986 * 6 5 3 30 30 H 1.07996 * 119.94499 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.46754 * 60.00567 * 12 10 9 32 32 H 1.09000 * 109.46483 * 180.02562 * 12 10 9 33 33 H 1.08996 * 109.47153 * 299.99712 * 12 10 9 34 34 H 1.09005 * 109.46741 * 174.99724 * 13 10 9 35 35 H 1.08998 * 109.47061 * 55.00146 * 13 10 9 36 36 H 0.97003 * 120.00208 * 180.27368 * 17 16 14 37 37 H 1.08002 * 119.94334 * 179.72726 * 22 8 7 38 38 H 1.08003 * 120.05959 * 180.27061 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2440 2.3427 -0.0005 5 6 3.4762 1.6892 -0.0006 6 6 3.9455 3.0087 -0.0011 7 6 5.2946 3.2538 -0.0022 8 6 6.1963 2.1949 -0.0033 9 8 7.5301 2.4429 -0.0049 10 6 8.3994 1.3151 -0.1247 11 1 7.9451 0.5744 -0.7828 12 6 8.6280 0.6982 1.2566 13 6 9.7395 1.7642 -0.7108 14 6 9.5314 2.2586 -2.1191 15 1 8.5423 2.2534 -2.5526 16 6 10.6039 2.7176 -2.8541 17 7 10.4232 3.1441 -4.0850 18 14 12.3149 2.7259 -2.1045 19 1 12.5509 4.0247 -1.4242 20 1 12.4282 1.6223 -1.1174 21 1 13.3256 2.5375 -3.1759 22 6 5.7354 0.8828 -0.0084 23 6 4.3884 0.6267 -0.0011 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.2461 3.8316 -0.0005 30 1 5.6577 4.2709 -0.0022 31 1 7.6733 0.3783 1.6741 32 1 9.2915 -0.1617 1.1652 33 1 9.0825 1.4389 1.9146 34 1 10.4324 0.9228 -0.7198 35 1 10.1518 2.5679 -0.1007 36 1 11.1783 3.4633 -4.6035 37 1 6.4397 0.0640 -0.0137 38 1 4.0315 -0.3927 -0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178517.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:53 Heat of formation + Delta-G solvation = -85.579900 kcal Electronic energy + Delta-G solvation = -19020.752262 eV Core-core repulsion = 16020.386428 eV Total energy + Delta-G solvation = -3000.365835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46778 -40.40915 -38.27682 -35.44046 -33.99489 -33.59028 -32.04871 -31.09870 -29.81068 -26.31336 -24.94503 -24.03048 -23.57352 -21.50216 -20.52142 -19.36216 -18.91479 -17.70583 -17.13898 -16.45898 -16.35058 -16.12684 -15.87921 -15.40729 -14.88498 -14.71925 -14.56519 -14.23757 -13.95998 -13.82914 -13.51589 -13.45206 -13.14045 -13.05674 -12.75046 -12.57065 -12.51215 -12.02175 -11.98005 -11.82668 -11.67269 -11.35790 -11.26791 -10.77797 -10.65449 -10.12293 -9.18002 -8.28769 -6.33311 -0.25162 0.36553 1.37060 1.38616 1.46892 1.49622 2.32127 2.36547 2.81700 3.07681 3.11779 3.74966 3.86530 3.97558 4.08914 4.15678 4.26367 4.32294 4.34409 4.36040 4.46500 4.59577 4.80344 4.85107 4.93329 4.99949 5.04356 5.08527 5.09980 5.15170 5.22370 5.30616 5.35245 5.37278 5.41809 5.60945 5.74451 6.23219 6.55634 6.62076 6.73483 7.29670 8.88427 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.034559 B = 0.003920 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.020761 B = 7141.479996 C = 7401.317086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.166 4.166 3 C 0.402 3.598 4 O -0.503 6.503 5 C -0.238 4.238 6 C -0.028 4.028 7 C -0.192 4.192 8 C 0.158 3.842 9 O -0.317 6.317 10 C 0.091 3.909 11 H 0.070 0.930 12 C -0.170 4.170 13 C -0.012 4.012 14 C -0.524 4.524 15 H 0.025 0.975 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.952 3.048 19 H -0.273 1.273 20 H -0.235 1.235 21 H -0.285 1.285 22 C -0.233 4.233 23 C -0.012 4.012 24 H 0.044 0.956 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.152 0.848 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -10.774 12.594 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C 0.284 3.716 4 O -0.383 6.383 5 C -0.240 4.240 6 C -0.046 4.046 7 C -0.211 4.211 8 C 0.110 3.890 9 O -0.230 6.230 10 C 0.036 3.964 11 H 0.088 0.912 12 C -0.227 4.227 13 C -0.049 4.049 14 C -0.562 4.562 15 H 0.043 0.957 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.775 3.225 19 H -0.198 1.198 20 H -0.158 1.158 21 H -0.211 1.211 22 C -0.251 4.251 23 C -0.030 4.030 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.139 0.861 28 H 0.144 0.856 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.170 0.830 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.676 -10.067 12.470 20.433 hybrid contribution 0.944 0.722 -0.498 1.289 sum -11.731 -9.345 11.972 19.190 Atomic orbital electron populations 1.21606 0.94002 1.02785 1.01750 1.22071 0.97990 0.93368 1.06849 1.22860 0.87025 0.92528 0.69212 1.90493 1.59043 1.49366 1.39375 1.20573 0.95789 0.94113 1.13492 1.21127 0.93931 0.97336 0.92200 1.20421 0.92406 0.98701 1.09591 1.19875 0.83769 0.94793 0.90516 1.86155 1.13651 1.37715 1.85481 1.22624 0.89981 0.86178 0.97602 0.91181 1.22368 1.03484 1.01832 0.95012 1.19732 0.93276 0.97753 0.94164 1.21307 0.94410 1.41960 0.98569 0.95692 1.26055 1.04177 0.94230 0.95063 1.70082 1.33035 1.44936 1.11352 0.85631 0.78033 0.80070 0.78729 1.19813 1.15756 1.21089 1.21467 0.98157 0.95352 1.10173 1.21445 0.90863 1.00080 0.90641 0.93703 0.89681 0.93352 0.86135 0.85590 0.84627 0.85441 0.90721 0.88984 0.91886 0.92517 0.95777 0.92566 0.83046 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.20 71.98 0.66 -1.44 16 2 C -0.17 -2.25 5.02 29.85 0.15 -2.10 16 3 C 0.40 9.32 7.11 27.95 0.20 9.52 16 4 O -0.50 -15.25 15.97 -3.06 -0.05 -15.30 16 5 C -0.24 -6.04 5.87 -20.15 -0.12 -6.15 16 6 C -0.03 -0.82 9.57 22.44 0.21 -0.60 16 7 C -0.19 -6.42 9.95 22.21 0.22 -6.20 16 8 C 0.16 5.50 6.61 22.67 0.15 5.65 16 9 O -0.32 -12.92 9.54 -89.79 -0.86 -13.78 16 10 C 0.09 3.36 2.17 30.60 0.07 3.42 16 11 H 0.07 2.52 6.30 -2.39 -0.02 2.51 16 12 C -0.17 -4.46 9.16 71.98 0.66 -3.80 16 13 C -0.01 -0.54 3.75 29.85 0.11 -0.43 16 14 C -0.52 -30.05 9.43 25.60 0.24 -29.81 16 15 H 0.02 1.61 7.99 -2.91 -0.02 1.59 16 16 C 0.00 0.07 5.47 84.66 0.46 0.53 16 17 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 18 Si 0.95 43.32 27.47 68.60 1.88 45.21 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.23 -9.41 6.53 99.48 0.65 -8.76 16 21 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 22 C -0.23 -6.33 8.18 22.21 0.18 -6.15 16 23 C -0.01 -0.27 9.44 22.44 0.21 -0.06 16 24 H 0.04 0.78 8.10 -2.39 -0.02 0.77 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 27 H 0.12 1.17 8.08 -2.39 -0.02 1.16 16 28 H 0.13 1.05 8.08 -2.39 -0.02 1.03 16 29 H 0.14 3.84 7.64 -2.91 -0.02 3.82 16 30 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.07 1.66 6.88 -2.39 -0.02 1.64 16 32 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 2.33 7.20 -2.38 -0.02 2.31 16 35 H 0.02 1.07 7.57 -2.39 -0.02 1.06 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.15 3.60 5.40 -2.91 -0.02 3.59 16 38 H 0.18 2.07 7.04 -2.91 -0.02 2.05 16 Total: -1.00 -73.65 317.78 5.68 -67.97 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.99 Total: 13.53 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 3.41 Total: -37.64 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.30 Total: -60.00 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.91 Total: -29.08 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Total: -73.65 5.68 -67.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178517.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.608 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds