Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47086 * 2 1 4 4 O 1.21297 * 120.00454 * 359.97438 * 3 2 1 5 5 C 1.46789 * 119.99971 * 179.97438 * 3 2 1 6 6 C 1.40024 * 120.22181 * 359.97438 * 5 3 2 7 7 C 1.37679 * 119.87712 * 180.02562 * 6 5 3 8 8 C 1.38621 * 120.34113 * 0.02631 * 7 6 5 9 9 C 1.38048 * 120.45775 * 359.67380 * 8 7 6 10 10 C 1.38693 * 120.10598 * 0.60083 * 9 8 7 11 11 O 1.35604 * 120.16849 * 179.69860 * 10 9 8 12 12 C 1.42895 * 117.00196 * 354.50811 * 11 10 9 13 13 H 1.08998 * 109.47287 * 324.95178 * 12 11 10 14 14 C 1.53005 * 109.46988 * 84.94945 * 12 11 10 15 15 C 1.52997 * 109.47333 * 204.94934 * 12 11 10 16 16 C 1.50700 * 109.47145 * 65.00285 * 15 12 11 17 17 H 1.07993 * 119.99994 * 359.97438 * 16 15 12 18 18 C 1.37883 * 119.99951 * 179.72611 * 16 15 12 19 19 N 1.31512 * 119.99932 * 0.26985 * 18 16 15 20 20 Si 1.86798 * 119.99924 * 180.27442 * 18 16 15 21 21 H 1.48504 * 109.47155 * 59.99882 * 20 18 16 22 22 H 1.48496 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47066 * 299.99800 * 20 18 16 24 24 H 1.09000 * 109.47319 * 300.00468 * 1 2 3 25 25 H 1.09004 * 109.46837 * 59.99981 * 1 2 3 26 26 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47319 * 239.99532 * 2 1 3 28 28 H 1.09004 * 109.46837 * 120.00019 * 2 1 3 29 29 H 1.08001 * 120.05873 * 0.02562 * 6 5 3 30 30 H 1.08007 * 119.82772 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.77329 * 179.97438 * 8 7 6 32 32 H 1.07996 * 119.95354 * 180.32294 * 9 8 7 33 33 H 1.08996 * 109.47204 * 180.02562 * 14 12 11 34 34 H 1.09001 * 109.46748 * 300.00360 * 14 12 11 35 35 H 1.08998 * 109.46916 * 60.00006 * 14 12 11 36 36 H 1.09004 * 109.47247 * 305.00102 * 15 12 11 37 37 H 1.09006 * 109.47083 * 185.00450 * 15 12 11 38 38 H 0.97000 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4755 1.6890 0.0006 6 6 4.3895 0.6283 0.0017 7 6 5.7416 0.8880 0.0027 8 6 6.2036 2.1950 0.0033 9 6 5.3149 3.2513 -0.0040 10 6 3.9489 3.0113 0.0006 11 8 3.0748 4.0480 -0.0004 12 6 3.6259 5.3613 0.1156 13 1 4.4984 5.3329 0.7682 14 6 4.0405 5.8644 -1.2686 15 6 2.5766 6.3043 0.7077 16 6 2.2584 5.8795 2.1182 17 1 2.7546 5.0226 2.5490 18 6 1.3375 6.5882 2.8605 19 7 0.7329 7.6316 2.3357 20 14 0.9488 6.0663 4.6115 21 1 2.1867 6.1193 5.4301 22 1 -0.0652 6.9851 5.1882 23 1 0.4165 4.6800 4.6082 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0345 -0.3917 0.0017 30 1 6.4459 0.0692 0.0031 31 1 7.2662 2.3882 0.0045 32 1 5.6838 4.2663 -0.0088 33 1 4.4612 6.8660 -1.1801 34 1 4.7880 5.1926 -1.6904 35 1 3.1679 5.8928 -1.9212 36 1 1.6703 6.2650 0.1033 37 1 2.9654 7.3226 0.7138 38 1 0.0848 8.1299 2.8578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829180670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = -64.828815 kcal Electronic energy + Delta-G solvation = -19846.812775 eV Core-core repulsion = 16847.346775 eV Total energy + Delta-G solvation = -2999.466000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.20080 -38.45013 -37.13555 -33.46163 -32.73257 -31.73495 -30.84914 -29.47399 -27.43325 -25.20193 -23.51515 -23.05253 -21.82538 -20.10965 -19.22470 -17.73987 -16.32996 -16.24627 -15.68360 -15.24239 -14.72479 -14.58799 -14.43947 -14.33619 -13.81540 -13.09866 -12.94924 -12.61508 -12.12449 -12.07200 -11.90194 -11.87150 -11.73203 -11.44881 -11.37570 -11.12092 -11.01799 -10.84965 -10.69027 -10.43165 -10.03017 -9.38331 -9.11609 -9.08226 -8.85871 -8.32192 -7.82912 -5.95573 -3.95958 0.97265 1.65271 2.81413 3.38110 3.41651 3.46112 3.81973 4.02803 4.28957 4.51568 4.92735 5.01010 5.15178 5.23047 5.23788 5.39671 5.41800 5.45760 5.62737 5.66531 5.74811 5.81519 5.89462 5.95448 6.05226 6.08420 6.17127 6.33238 6.37522 6.49618 6.55042 6.63322 6.76357 6.91167 7.50929 7.64566 8.00281 8.07696 8.13983 8.41747 9.05876 9.66468 11.16156 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.007081 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.782149 B = 3953.502981 C = 4837.796214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.165 4.165 3 C 0.380 3.620 4 O -0.415 6.415 5 C -0.218 4.218 6 C -0.039 4.039 7 C -0.191 4.191 8 C -0.051 4.051 9 C -0.231 4.231 10 C 0.204 3.796 11 O -0.257 6.257 12 C 0.079 3.921 13 H 0.063 0.937 14 C -0.177 4.177 15 C 0.028 3.972 16 C -0.510 4.510 17 H 0.053 0.947 18 C 0.059 3.941 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.038 0.962 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -14.621 -6.438 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C 0.255 3.745 4 O -0.288 6.288 5 C -0.220 4.220 6 C -0.058 4.058 7 C -0.209 4.209 8 C -0.069 4.069 9 C -0.249 4.249 10 C 0.153 3.847 11 O -0.166 6.166 12 C 0.024 3.976 13 H 0.081 0.919 14 C -0.234 4.234 15 C -0.009 4.009 16 C -0.548 4.548 17 H 0.071 0.929 18 C -0.142 4.142 19 N -0.537 5.537 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.057 -13.939 -6.413 17.330 hybrid contribution 0.184 -0.201 1.024 1.060 sum 8.241 -14.140 -5.389 17.231 Atomic orbital electron populations 1.21583 0.93905 1.01178 1.03432 1.21941 0.98158 0.96422 1.03766 1.22139 0.87698 0.90975 0.73710 1.90691 1.57581 1.47038 1.33467 1.19979 0.95822 0.91098 1.15123 1.21170 0.92642 0.97698 0.94257 1.20849 0.95365 0.96642 1.08029 1.21102 0.99257 0.92357 0.94196 1.21422 0.92374 1.00734 1.10417 1.19534 0.88987 0.88574 0.87582 1.86483 1.33007 1.13909 1.83219 1.23020 0.99220 0.80358 0.95028 0.91916 1.22416 1.01509 1.01304 0.98216 1.19243 0.93242 0.92376 0.96024 1.21025 1.23397 1.12661 0.97704 0.92893 1.24944 0.95921 0.95014 0.98348 1.69936 1.27762 1.18852 1.37135 0.86659 0.78035 0.78612 0.84766 1.20331 1.21237 1.20167 0.91912 0.92132 0.92535 0.89084 0.89007 0.85170 0.85985 0.85944 0.84668 0.91235 0.93353 0.91772 0.95088 0.94381 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.20 37.16 0.34 -1.46 16 2 C -0.17 -1.99 5.03 -27.88 -0.14 -2.13 16 3 C 0.38 6.61 7.11 -30.85 -0.22 6.39 16 4 O -0.42 -9.35 14.79 -16.37 -0.24 -9.59 16 5 C -0.22 -3.65 5.88 -104.94 -0.62 -4.27 16 6 C -0.04 -0.49 9.46 -39.12 -0.37 -0.86 16 7 C -0.19 -2.20 10.02 -39.64 -0.40 -2.60 16 8 C -0.05 -0.64 10.03 -39.51 -0.40 -1.04 16 9 C -0.23 -3.64 8.23 -39.48 -0.33 -3.96 16 10 C 0.20 3.86 6.62 -38.58 -0.26 3.61 16 11 O -0.26 -5.84 7.63 -40.42 -0.31 -6.15 16 12 C 0.08 1.71 2.17 -26.73 -0.06 1.65 16 13 H 0.06 1.29 6.31 -51.93 -0.33 0.96 16 14 C -0.18 -3.10 9.17 37.16 0.34 -2.76 16 15 C 0.03 0.74 4.68 -27.88 -0.13 0.61 16 16 C -0.51 -15.04 8.88 -34.44 -0.31 -15.35 16 17 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 20 Si 0.89 22.75 29.54 -169.99 -5.02 17.73 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 24 H 0.06 0.90 8.10 -51.93 -0.42 0.47 16 25 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 28 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 29 H 0.13 1.17 7.05 -52.49 -0.37 0.80 16 30 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.14 2.03 5.42 -52.49 -0.28 1.75 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.74 6.91 -51.93 -0.36 0.38 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -34.27 319.45 -8.17 -42.44 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.52 Total: -1.81 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -2.63 Total: -20.51 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.74 Total: -26.93 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.55 Total: -15.74 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.27 -8.17 -42.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.387 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds