Wall clock time and date at job start Mon Mar 30 2020 06:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47086 * 2 1 4 4 O 1.21297 * 120.00454 * 359.97438 * 3 2 1 5 5 C 1.46789 * 119.99971 * 179.97438 * 3 2 1 6 6 C 1.40024 * 120.22181 * 359.97438 * 5 3 2 7 7 C 1.37679 * 119.87712 * 180.02562 * 6 5 3 8 8 C 1.38621 * 120.34113 * 0.02631 * 7 6 5 9 9 C 1.38048 * 120.45775 * 359.67380 * 8 7 6 10 10 C 1.38693 * 120.10598 * 0.60083 * 9 8 7 11 11 O 1.35604 * 120.16849 * 179.69860 * 10 9 8 12 12 C 1.42895 * 117.00196 * 354.50811 * 11 10 9 13 13 H 1.08998 * 109.47287 * 324.95178 * 12 11 10 14 14 C 1.53005 * 109.46988 * 84.94945 * 12 11 10 15 15 C 1.52997 * 109.47333 * 204.94934 * 12 11 10 16 16 C 1.50700 * 109.47145 * 65.00285 * 15 12 11 17 17 H 1.07993 * 119.99994 * 359.97438 * 16 15 12 18 18 C 1.37883 * 119.99951 * 179.72611 * 16 15 12 19 19 N 1.31512 * 119.99932 * 0.26985 * 18 16 15 20 20 Si 1.86798 * 119.99924 * 180.27442 * 18 16 15 21 21 H 1.48504 * 109.47155 * 59.99882 * 20 18 16 22 22 H 1.48496 * 109.46930 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47066 * 299.99800 * 20 18 16 24 24 H 1.09000 * 109.47319 * 300.00468 * 1 2 3 25 25 H 1.09004 * 109.46837 * 59.99981 * 1 2 3 26 26 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47319 * 239.99532 * 2 1 3 28 28 H 1.09004 * 109.46837 * 120.00019 * 2 1 3 29 29 H 1.08001 * 120.05873 * 0.02562 * 6 5 3 30 30 H 1.08007 * 119.82772 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.77329 * 179.97438 * 8 7 6 32 32 H 1.07996 * 119.95354 * 180.32294 * 9 8 7 33 33 H 1.08996 * 109.47204 * 180.02562 * 14 12 11 34 34 H 1.09001 * 109.46748 * 300.00360 * 14 12 11 35 35 H 1.08998 * 109.46916 * 60.00006 * 14 12 11 36 36 H 1.09004 * 109.47247 * 305.00102 * 15 12 11 37 37 H 1.09006 * 109.47083 * 185.00450 * 15 12 11 38 38 H 0.97000 * 119.99752 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3428 -0.0005 5 6 3.4755 1.6890 0.0006 6 6 4.3895 0.6283 0.0017 7 6 5.7416 0.8880 0.0027 8 6 6.2036 2.1950 0.0033 9 6 5.3149 3.2513 -0.0040 10 6 3.9489 3.0113 0.0006 11 8 3.0748 4.0480 -0.0004 12 6 3.6259 5.3613 0.1156 13 1 4.4984 5.3329 0.7682 14 6 4.0405 5.8644 -1.2686 15 6 2.5766 6.3043 0.7077 16 6 2.2584 5.8795 2.1182 17 1 2.7546 5.0226 2.5490 18 6 1.3375 6.5882 2.8605 19 7 0.7329 7.6316 2.3357 20 14 0.9488 6.0663 4.6115 21 1 2.1867 6.1193 5.4301 22 1 -0.0652 6.9851 5.1882 23 1 0.4165 4.6800 4.6082 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 4.0345 -0.3917 0.0017 30 1 6.4459 0.0692 0.0031 31 1 7.2662 2.3882 0.0045 32 1 5.6838 4.2663 -0.0088 33 1 4.4612 6.8660 -1.1801 34 1 4.7880 5.1926 -1.6904 35 1 3.1679 5.8928 -1.9212 36 1 1.6703 6.2650 0.1033 37 1 2.9654 7.3226 0.7138 38 1 0.0848 8.1299 2.8578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829180670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:59 Heat of formation + Delta-G solvation = -85.165054 kcal Electronic energy + Delta-G solvation = -19847.694620 eV Core-core repulsion = 16847.346775 eV Total energy + Delta-G solvation = -3000.347846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.49210 -39.87235 -38.39347 -35.50514 -33.85529 -33.54310 -32.00813 -30.65476 -29.42448 -26.34311 -25.36515 -24.37198 -23.09423 -21.61633 -20.45353 -19.08887 -18.58662 -17.44441 -17.08502 -16.52402 -16.45905 -15.98265 -15.69167 -15.60869 -15.18664 -14.53883 -14.37815 -14.06786 -13.81122 -13.61125 -13.42935 -13.14740 -13.07712 -12.80794 -12.77964 -12.68130 -12.52001 -12.32733 -12.05062 -11.99421 -11.80591 -11.39067 -11.12650 -10.63794 -10.40355 -9.95232 -9.08231 -8.25556 -6.34236 -0.16268 0.54046 1.30183 1.35487 1.42790 1.62429 2.35426 2.41683 2.91327 3.08695 3.17719 3.88072 3.91494 4.06958 4.13061 4.16554 4.29727 4.30647 4.35104 4.41273 4.52722 4.61711 4.74504 4.87712 4.94013 4.96657 5.06877 5.07783 5.10693 5.29075 5.30927 5.36281 5.44285 5.47584 5.54296 5.70246 5.93924 6.13791 6.66377 6.75884 6.86580 7.32216 8.86549 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.015216 B = 0.007081 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.782149 B = 3953.502981 C = 4837.796214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 C 0.371 3.629 4 O -0.490 6.490 5 C -0.247 4.247 6 C -0.026 4.026 7 C -0.176 4.176 8 C -0.043 4.043 9 C -0.246 4.246 10 C 0.155 3.845 11 O -0.298 6.298 12 C 0.087 3.913 13 H 0.069 0.931 14 C -0.165 4.165 15 C 0.032 3.968 16 C -0.529 4.529 17 H 0.045 0.955 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.959 3.041 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.279 1.279 24 H 0.033 0.967 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.130 0.870 28 H 0.123 0.877 29 H 0.175 0.825 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.049 0.951 36 H -0.011 1.011 37 H 0.028 0.972 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -18.223 -5.965 22.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.192 4.192 3 C 0.251 3.749 4 O -0.367 6.367 5 C -0.249 4.249 6 C -0.044 4.044 7 C -0.193 4.193 8 C -0.061 4.061 9 C -0.264 4.264 10 C 0.107 3.893 11 O -0.210 6.210 12 C 0.032 3.968 13 H 0.087 0.913 14 C -0.222 4.222 15 C -0.005 4.005 16 C -0.567 4.567 17 H 0.063 0.937 18 C -0.195 4.195 19 N -0.571 5.571 20 Si 0.784 3.216 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.205 1.205 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.148 0.852 28 H 0.141 0.859 29 H 0.192 0.808 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.151 0.849 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.008 0.992 37 H 0.046 0.954 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.841 -17.571 -5.947 21.485 hybrid contribution -0.567 0.775 0.835 1.273 sum 10.274 -16.795 -5.112 20.341 Atomic orbital electron populations 1.21603 0.94789 1.02693 1.01136 1.22017 0.97387 0.93005 1.06838 1.23167 0.87967 0.92729 0.71034 1.90671 1.59193 1.49585 1.37265 1.20370 0.96457 0.91531 1.16510 1.21673 0.92487 0.98321 0.91884 1.21447 0.95696 0.97389 1.04816 1.21593 1.00544 0.92050 0.91881 1.21542 0.91517 1.01989 1.11391 1.20078 0.90076 0.88495 0.90690 1.86392 1.35077 1.14585 1.84940 1.22677 0.97021 0.80165 0.96982 0.91350 1.22295 1.01603 1.02605 0.95671 1.19068 0.93200 0.93507 0.94750 1.21342 1.23764 1.12395 0.99160 0.93703 1.25877 0.95642 0.94989 1.03037 1.70058 1.28275 1.19875 1.38914 0.85592 0.78642 0.77947 0.79461 1.18436 1.19901 1.20510 0.94819 0.94039 0.88852 0.85214 0.85941 0.80811 0.81395 0.82338 0.84867 0.89660 0.90699 0.93160 0.99237 0.95433 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.20 71.98 0.66 -2.88 16 2 C -0.16 -3.37 5.03 29.85 0.15 -3.22 16 3 C 0.37 13.12 7.11 27.92 0.20 13.32 16 4 O -0.49 -23.80 14.79 17.86 0.26 -23.54 16 5 C -0.25 -8.08 5.88 -20.07 -0.12 -8.19 16 6 C -0.03 -0.53 9.46 22.57 0.21 -0.32 16 7 C -0.18 -3.06 10.02 22.23 0.22 -2.84 16 8 C -0.04 -0.90 10.03 22.32 0.22 -0.68 16 9 C -0.25 -7.49 8.23 22.33 0.18 -7.30 16 10 C 0.15 6.00 6.62 22.92 0.15 6.15 16 11 O -0.30 -14.52 7.63 -68.19 -0.52 -15.04 16 12 C 0.09 3.99 2.17 30.60 0.07 4.05 16 13 H 0.07 2.96 6.31 -2.39 -0.02 2.94 16 14 C -0.16 -5.97 9.17 71.98 0.66 -5.31 16 15 C 0.03 1.81 4.68 29.85 0.14 1.95 16 16 C -0.53 -32.93 8.88 25.60 0.23 -32.71 16 17 H 0.04 2.79 7.74 -2.91 -0.02 2.77 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -59.77 13.29 21.45 0.28 -59.49 16 20 Si 0.96 47.93 29.54 68.60 2.03 49.95 16 21 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 24 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 25 H 0.04 1.14 8.10 -2.38 -0.02 1.12 16 26 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.13 1.84 8.09 -2.39 -0.02 1.83 16 28 H 0.12 1.95 8.09 -2.38 -0.02 1.93 16 29 H 0.17 1.96 7.05 -2.91 -0.02 1.94 16 30 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 32 H 0.13 3.95 5.42 -2.91 -0.02 3.93 16 33 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.07 2.29 6.91 -2.39 -0.02 2.27 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 37 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -83.57 319.45 6.54 -77.03 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.04 Total: 8.46 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 3.44 Total: -37.38 kcal Atomic # 7 Polarization: -59.77 SS G_CDS: 0.28 Total: -59.49 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.26 Total: -38.57 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.95 kcal Total: -83.57 6.54 -77.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829180670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.137 kcal (2) G-P(sol) polarization free energy of solvation -83.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds