Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47404 * 2 1 4 4 N 1.46494 * 109.47411 * 173.73119 * 3 2 1 5 5 C 1.34779 * 120.00088 * 263.26531 * 4 3 2 6 6 O 1.21288 * 119.99642 * 186.33694 * 5 4 3 7 7 C 1.50697 * 119.99659 * 6.34353 * 5 4 3 8 8 H 1.08994 * 109.47406 * 332.18528 * 7 5 4 9 9 C 1.53000 * 109.47325 * 92.19091 * 7 5 4 10 10 C 1.50707 * 109.46594 * 212.18884 * 7 5 4 11 11 H 1.08000 * 120.00299 * 0.02562 * 10 7 5 12 12 C 1.37876 * 119.99836 * 180.02562 * 10 7 5 13 13 N 1.31518 * 119.99792 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00242 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46987 * 89.99684 * 14 12 10 16 16 H 1.48497 * 109.47251 * 209.99852 * 14 12 10 17 17 H 1.48506 * 109.46887 * 330.00210 * 14 12 10 18 18 C 1.39955 * 119.99966 * 83.26925 * 4 3 2 19 19 C 1.39279 * 120.48555 * 174.06159 * 18 4 3 20 20 C 1.38505 * 118.35693 * 179.97438 * 19 18 4 21 21 C 1.38268 * 119.23809 * 0.02562 * 20 19 18 22 22 N 1.31861 * 120.91714 * 359.72512 * 21 20 19 23 23 C 1.31812 * 121.79621 * 0.56573 * 22 21 20 24 24 H 1.08997 * 109.47111 * 60.00199 * 1 2 3 25 25 H 1.09006 * 109.47562 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47457 * 299.99984 * 1 2 3 27 27 H 1.09003 * 109.47606 * 239.99514 * 2 1 3 28 28 H 1.09003 * 109.47173 * 119.99372 * 2 1 3 29 29 H 1.08998 * 109.46878 * 53.72768 * 3 2 1 30 30 H 1.09003 * 109.46885 * 293.73416 * 3 2 1 31 31 H 1.09000 * 109.47116 * 284.10658 * 9 7 5 32 32 H 1.09003 * 109.47194 * 44.10313 * 9 7 5 33 33 H 1.08998 * 109.46795 * 164.09955 * 9 7 5 34 34 H 0.97004 * 119.99826 * 179.97438 * 13 12 10 35 35 H 1.07994 * 120.82772 * 0.02562 * 19 18 4 36 36 H 1.08009 * 120.38308 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.54262 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.67029 * 179.70835 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4971 1.4452 0.1508 5 6 4.0484 1.6255 1.3674 6 8 5.2506 1.7428 1.4771 7 6 3.1710 1.6811 2.5914 8 1 2.1830 2.0484 2.3139 9 6 3.0440 0.2796 3.1920 10 6 3.7848 2.6094 3.6076 11 1 4.7168 3.1094 3.3888 12 6 3.1566 2.8204 4.8167 13 7 2.0215 2.2119 5.0829 14 14 3.9177 3.9704 6.0766 15 1 3.4135 5.3497 5.8561 16 1 3.5492 3.5212 7.4432 17 1 5.3957 3.9547 5.9320 18 6 4.3168 1.2608 -0.9685 19 6 5.6999 1.3838 -0.8594 20 6 6.4690 1.1916 -1.9951 21 6 5.8442 0.8869 -3.1903 22 7 4.5323 0.7727 -3.2592 23 6 3.7632 0.9530 -2.2040 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.5879 1.9877 0.8285 30 1 1.7711 1.9229 -0.9408 31 1 2.3593 -0.3144 2.5866 32 1 4.0232 -0.1989 3.2082 33 1 2.6589 0.3538 4.2090 34 1 1.5797 2.3600 5.9337 35 1 6.1613 1.6223 0.0874 36 1 7.5446 1.2786 -1.9477 37 1 6.4392 0.7364 -4.0791 38 1 2.6919 0.8556 -2.3005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829763199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = 7.589245 kcal Electronic energy + Delta-G solvation = -20163.333265 eV Core-core repulsion = 17199.300299 eV Total energy + Delta-G solvation = -2964.032966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.72630 -38.79027 -36.16083 -34.17915 -32.97863 -31.75486 -30.88719 -29.46919 -26.29891 -25.35356 -24.04353 -23.13499 -21.83115 -21.51200 -18.83792 -17.23846 -17.12749 -16.41082 -16.02592 -15.14641 -14.91165 -14.90024 -14.48125 -13.79976 -13.53772 -13.23391 -13.15443 -12.82938 -12.70499 -12.20854 -11.89327 -11.62505 -11.52040 -11.26125 -11.09630 -10.91724 -10.83239 -10.53846 -10.27285 -10.22030 -10.09380 -9.63334 -9.33600 -9.10191 -8.57218 -8.27712 -7.72283 -6.16566 -4.22262 1.33249 1.60599 3.18651 3.25458 3.31647 3.32934 3.41004 4.13657 4.35162 4.67410 4.95705 4.98142 5.10975 5.14998 5.16598 5.36864 5.43032 5.47220 5.59258 5.71773 5.76395 5.87551 5.93843 6.09780 6.19935 6.33093 6.34648 6.52644 6.63518 6.65111 6.80891 6.83569 7.23260 7.27642 7.61979 7.70666 7.91285 8.14590 8.17589 8.79971 8.85686 9.43110 10.89789 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.006372 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.944753 B = 4393.012190 C = 5399.497375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.097 3.903 4 N -0.557 5.557 5 C 0.525 3.475 6 O -0.519 6.519 7 C 0.034 3.966 8 H 0.053 0.947 9 C -0.132 4.132 10 C -0.506 4.506 11 H 0.068 0.932 12 C 0.062 3.938 13 N -0.890 5.890 14 Si 0.900 3.100 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.122 3.878 19 C -0.134 4.134 20 C -0.148 4.148 21 C 0.048 3.952 22 N -0.466 5.466 23 C 0.046 3.954 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.021 0.979 32 H 0.028 0.972 33 H 0.099 0.901 34 H 0.263 0.737 35 H 0.191 0.809 36 H 0.131 0.869 37 H 0.148 0.852 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.856 -3.396 -10.961 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.025 4.025 4 N -0.279 5.279 5 C 0.319 3.681 6 O -0.395 6.395 7 C 0.014 3.986 8 H 0.071 0.929 9 C -0.190 4.190 10 C -0.544 4.544 11 H 0.086 0.914 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.728 3.272 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.197 1.197 18 C 0.023 3.977 19 C -0.161 4.161 20 C -0.168 4.168 21 C -0.110 4.110 22 N -0.174 5.174 23 C -0.115 4.115 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.207 0.793 36 H 0.149 0.851 37 H 0.166 0.834 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.788 -3.530 -11.436 11.994 hybrid contribution 0.671 0.731 1.331 1.660 sum -0.117 -2.800 -10.105 10.486 Atomic orbital electron populations 1.21681 0.94806 1.01923 1.02187 1.22076 0.96561 0.96786 1.03265 1.21985 0.78353 0.98121 1.04063 1.46097 1.06951 1.68591 1.06248 1.22480 0.89750 0.72026 0.83856 1.90179 1.16297 1.47969 1.85029 1.18999 0.94842 0.96598 0.88200 0.92909 1.21783 0.98500 0.94327 1.04420 1.21019 1.08365 1.25337 0.99666 0.91376 1.24918 0.94873 0.96092 0.98069 1.69869 1.16436 1.42488 1.24124 0.86439 0.79837 0.80690 0.80238 1.20564 1.21084 1.19671 1.19263 0.91779 0.97972 0.88647 1.23294 0.92282 0.97955 1.02597 1.22158 1.01136 1.00103 0.93450 1.22528 0.90754 1.00162 0.97570 1.67537 1.06461 1.12611 1.30798 1.22436 0.99968 1.01838 0.87246 0.92812 0.92536 0.91829 0.91952 0.90337 0.87491 0.90519 0.95971 0.95314 0.88239 0.92692 0.79274 0.85066 0.83437 0.82967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.15 0.37 -1.25 16 2 C -0.15 -1.95 6.05 -26.74 -0.16 -2.11 16 3 C 0.10 1.42 4.62 -4.04 -0.02 1.40 16 4 N -0.56 -10.08 2.71 -113.34 -0.31 -10.39 16 5 C 0.52 11.51 6.57 -10.99 -0.07 11.44 16 6 O -0.52 -12.49 12.47 5.55 0.07 -12.42 16 7 C 0.03 0.81 2.18 -92.92 -0.20 0.61 16 8 H 0.05 1.23 5.63 -51.93 -0.29 0.94 16 9 C -0.13 -2.98 9.17 37.16 0.34 -2.64 16 10 C -0.51 -13.55 8.32 -34.44 -0.29 -13.84 16 11 H 0.07 1.92 7.19 -52.49 -0.38 1.54 16 12 C 0.06 1.64 5.22 -17.82 -0.09 1.54 16 13 N -0.89 -23.68 11.34 55.43 0.63 -23.05 16 14 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.12 2.13 6.48 -83.54 -0.54 1.59 16 19 C -0.13 -2.37 9.14 -39.10 -0.36 -2.73 16 20 C -0.15 -2.15 10.10 -39.47 -0.40 -2.55 16 21 C 0.05 0.67 11.18 -17.53 -0.20 0.48 16 22 N -0.47 -7.28 10.35 -13.09 -0.14 -7.41 16 23 C 0.05 0.71 9.89 -17.33 -0.17 0.54 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.78 6.97 -51.93 -0.36 0.41 16 28 H 0.08 1.18 5.77 -51.93 -0.30 0.88 16 29 H 0.11 1.68 5.60 -51.93 -0.29 1.38 16 30 H 0.08 0.94 6.90 -51.93 -0.36 0.58 16 31 H 0.02 0.42 5.77 -51.93 -0.30 0.13 16 32 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 33 H 0.10 2.47 5.81 -51.93 -0.30 2.17 16 34 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 35 H 0.19 3.79 4.67 -55.51 -0.26 3.53 16 36 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 37 H 0.15 1.58 8.06 -52.48 -0.42 1.15 16 38 H 0.15 2.02 5.71 -52.49 -0.30 1.72 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -29.01 303.48 -6.79 -35.80 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.81 Total: 4.60 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -1.79 Total: -7.53 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.19 Total: -40.85 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.07 Total: -12.42 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.01 -6.79 -35.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829763199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.391 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds