Wall clock time and date at job start Mon Mar 30 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47404 * 2 1 4 4 N 1.46494 * 109.47411 * 173.73119 * 3 2 1 5 5 C 1.34779 * 120.00088 * 263.26531 * 4 3 2 6 6 O 1.21288 * 119.99642 * 186.33694 * 5 4 3 7 7 C 1.50697 * 119.99659 * 6.34353 * 5 4 3 8 8 H 1.08994 * 109.47406 * 332.18528 * 7 5 4 9 9 C 1.53000 * 109.47325 * 92.19091 * 7 5 4 10 10 C 1.50707 * 109.46594 * 212.18884 * 7 5 4 11 11 H 1.08000 * 120.00299 * 0.02562 * 10 7 5 12 12 C 1.37876 * 119.99836 * 180.02562 * 10 7 5 13 13 N 1.31518 * 119.99792 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00242 * 179.97438 * 12 10 7 15 15 H 1.48506 * 109.46987 * 89.99684 * 14 12 10 16 16 H 1.48497 * 109.47251 * 209.99852 * 14 12 10 17 17 H 1.48506 * 109.46887 * 330.00210 * 14 12 10 18 18 C 1.39955 * 119.99966 * 83.26925 * 4 3 2 19 19 C 1.39279 * 120.48555 * 174.06159 * 18 4 3 20 20 C 1.38505 * 118.35693 * 179.97438 * 19 18 4 21 21 C 1.38268 * 119.23809 * 0.02562 * 20 19 18 22 22 N 1.31861 * 120.91714 * 359.72512 * 21 20 19 23 23 C 1.31812 * 121.79621 * 0.56573 * 22 21 20 24 24 H 1.08997 * 109.47111 * 60.00199 * 1 2 3 25 25 H 1.09006 * 109.47562 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47457 * 299.99984 * 1 2 3 27 27 H 1.09003 * 109.47606 * 239.99514 * 2 1 3 28 28 H 1.09003 * 109.47173 * 119.99372 * 2 1 3 29 29 H 1.08998 * 109.46878 * 53.72768 * 3 2 1 30 30 H 1.09003 * 109.46885 * 293.73416 * 3 2 1 31 31 H 1.09000 * 109.47116 * 284.10658 * 9 7 5 32 32 H 1.09003 * 109.47194 * 44.10313 * 9 7 5 33 33 H 1.08998 * 109.46795 * 164.09955 * 9 7 5 34 34 H 0.97004 * 119.99826 * 179.97438 * 13 12 10 35 35 H 1.07994 * 120.82772 * 0.02562 * 19 18 4 36 36 H 1.08009 * 120.38308 * 180.02562 * 20 19 18 37 37 H 1.08004 * 119.54262 * 179.97438 * 21 20 19 38 38 H 1.07997 * 119.67029 * 179.70835 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4971 1.4452 0.1508 5 6 4.0484 1.6255 1.3674 6 8 5.2506 1.7428 1.4771 7 6 3.1710 1.6811 2.5914 8 1 2.1830 2.0484 2.3139 9 6 3.0440 0.2796 3.1920 10 6 3.7848 2.6094 3.6076 11 1 4.7168 3.1094 3.3888 12 6 3.1566 2.8204 4.8167 13 7 2.0215 2.2119 5.0829 14 14 3.9177 3.9704 6.0766 15 1 3.4135 5.3497 5.8561 16 1 3.5492 3.5212 7.4432 17 1 5.3957 3.9547 5.9320 18 6 4.3168 1.2608 -0.9685 19 6 5.6999 1.3838 -0.8594 20 6 6.4690 1.1916 -1.9951 21 6 5.8442 0.8869 -3.1903 22 7 4.5323 0.7727 -3.2592 23 6 3.7632 0.9530 -2.2040 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.5879 1.9877 0.8285 30 1 1.7711 1.9229 -0.9408 31 1 2.3593 -0.3144 2.5866 32 1 4.0232 -0.1989 3.2082 33 1 2.6589 0.3538 4.2090 34 1 1.5797 2.3600 5.9337 35 1 6.1613 1.6223 0.0874 36 1 7.5446 1.2786 -1.9477 37 1 6.4392 0.7364 -4.0791 38 1 2.6919 0.8556 -2.3005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829763199.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:56 Heat of formation + Delta-G solvation = -9.052464 kcal Electronic energy + Delta-G solvation = -20164.054904 eV Core-core repulsion = 17199.300299 eV Total energy + Delta-G solvation = -2964.754605 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.12576 -40.18650 -37.56490 -36.03127 -34.23739 -33.00448 -32.62172 -30.86592 -27.46776 -27.32304 -25.54747 -24.42748 -23.25999 -22.67645 -20.39914 -18.77601 -18.51638 -17.95997 -17.61779 -16.76038 -16.42805 -16.15614 -15.88197 -15.15450 -14.83914 -14.74682 -14.57573 -14.22328 -14.13616 -13.54906 -13.26774 -13.04109 -12.96084 -12.77872 -12.63811 -12.61790 -12.33148 -12.20194 -12.07716 -11.64569 -11.47603 -11.08806 -10.89044 -10.54657 -10.51484 -9.88107 -9.04846 -8.18892 -6.30892 0.11318 0.32893 1.39673 1.41708 1.51790 1.71685 1.81649 2.42190 2.91818 3.10509 3.55849 3.65719 3.84275 3.96289 4.05657 4.17291 4.25850 4.29390 4.43102 4.59092 4.61491 4.64998 4.69803 4.93803 4.95796 4.96875 5.05698 5.18045 5.30258 5.31202 5.37961 5.47457 5.49250 5.66678 5.86597 5.95586 6.10860 6.34331 6.73145 6.98174 7.19582 7.37312 8.86056 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.006372 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.944753 B = 4393.012190 C = 5399.497375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C 0.091 3.909 4 N -0.551 5.551 5 C 0.522 3.478 6 O -0.553 6.553 7 C 0.034 3.966 8 H 0.054 0.946 9 C -0.121 4.121 10 C -0.531 4.531 11 H 0.044 0.956 12 C 0.026 3.974 13 N -0.904 5.904 14 Si 0.954 3.046 15 H -0.272 1.272 16 H -0.275 1.275 17 H -0.280 1.280 18 C 0.097 3.903 19 C -0.159 4.159 20 C -0.143 4.143 21 C 0.058 3.942 22 N -0.476 5.476 23 C 0.056 3.944 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.187 0.813 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -3.706 -13.003 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C -0.030 4.030 4 N -0.272 5.272 5 C 0.315 3.685 6 O -0.431 6.431 7 C 0.013 3.987 8 H 0.072 0.928 9 C -0.178 4.178 10 C -0.570 4.570 11 H 0.062 0.938 12 C -0.174 4.174 13 N -0.542 5.542 14 Si 0.779 3.221 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.206 1.206 18 C -0.001 4.001 19 C -0.187 4.187 20 C -0.163 4.163 21 C -0.100 4.100 22 N -0.185 5.185 23 C -0.104 4.104 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.204 0.796 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.372 -3.850 -13.513 14.118 hybrid contribution 0.889 0.809 1.849 2.205 sum -0.483 -3.041 -11.664 12.064 Atomic orbital electron populations 1.21660 0.92909 1.02847 1.02712 1.22004 0.98066 0.95270 1.02601 1.22236 0.76308 0.99459 1.04959 1.45914 1.08311 1.67690 1.05319 1.22088 0.89065 0.72425 0.84903 1.90201 1.17298 1.49709 1.85927 1.18893 0.94915 0.96266 0.88661 0.92789 1.21611 0.98337 0.94386 1.03513 1.21163 1.07938 1.26557 1.01298 0.93807 1.25516 0.95310 0.97251 0.99331 1.69936 1.16857 1.42840 1.24574 0.85622 0.78486 0.79401 0.78565 1.19713 1.20000 1.20577 1.19421 0.91729 0.99873 0.89045 1.23158 0.93163 0.99533 1.02803 1.22431 1.02423 0.98926 0.92518 1.23167 0.90538 0.97792 0.98498 1.67661 1.07293 1.12977 1.30523 1.22718 1.01098 1.00447 0.86153 0.90695 0.91431 0.92918 0.90809 0.92708 0.88928 0.87550 0.93186 0.96442 0.90506 0.92352 0.82052 0.82312 0.79569 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.91 71.98 0.71 -2.10 16 2 C -0.14 -3.47 6.05 30.59 0.19 -3.28 16 3 C 0.09 2.57 4.62 86.38 0.40 2.97 16 4 N -0.55 -19.99 2.71 -630.87 -1.71 -21.70 16 5 C 0.52 23.71 6.57 87.66 0.58 24.29 16 6 O -0.55 -28.03 12.47 -3.06 -0.04 -28.07 16 7 C 0.03 1.63 2.18 -12.28 -0.03 1.60 16 8 H 0.05 2.58 5.63 -2.39 -0.01 2.57 16 9 C -0.12 -5.58 9.17 71.98 0.66 -4.92 16 10 C -0.53 -29.55 8.32 25.60 0.21 -29.33 16 11 H 0.04 2.59 7.19 -2.91 -0.02 2.57 16 12 C 0.03 1.40 5.22 84.65 0.44 1.84 16 13 N -0.90 -48.52 11.34 21.45 0.24 -48.28 16 14 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 C 0.10 3.32 6.48 38.24 0.25 3.57 16 19 C -0.16 -5.64 9.14 22.58 0.21 -5.43 16 20 C -0.14 -3.86 10.10 22.34 0.23 -3.64 16 21 C 0.06 1.42 11.18 84.70 0.95 2.36 16 22 N -0.48 -13.35 10.35 -195.33 -2.02 -15.37 16 23 C 0.06 1.60 9.89 84.84 0.84 2.43 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.65 6.97 -2.39 -0.02 1.63 16 28 H 0.05 1.61 5.77 -2.39 -0.01 1.59 16 29 H 0.09 2.89 5.60 -2.39 -0.01 2.88 16 30 H 0.11 2.35 6.90 -2.39 -0.02 2.33 16 31 H 0.05 1.97 5.77 -2.39 -0.01 1.96 16 32 H 0.02 0.79 8.03 -2.39 -0.02 0.77 16 33 H 0.08 3.91 5.81 -2.39 -0.01 3.90 16 34 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 35 H 0.16 6.78 4.67 -50.71 -0.24 6.54 16 36 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.18 4.04 5.71 -2.91 -0.02 4.02 16 Total: -1.00 -64.14 303.48 4.98 -59.17 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.85 Total: 18.57 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 5.63 Total: -9.64 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -3.49 Total: -85.35 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.04 Total: -28.07 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.14 4.98 -59.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829763199.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.113 kcal (2) G-P(sol) polarization free energy of solvation -64.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds