Wall clock time and date at job start Mon Mar 30 2020 06:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38307 * 119.96641 * 2 1 4 4 C 1.38261 * 120.15104 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07571 * 359.73887 * 4 3 2 6 6 C 1.50693 * 120.03995 * 180.27984 * 5 4 3 7 7 C 1.38891 * 119.92163 * 0.53687 * 5 4 3 8 8 N 1.39678 * 120.07441 * 179.74003 * 7 5 4 9 9 N 1.40095 * 120.00071 * 179.71798 * 8 7 5 10 10 C 1.34777 * 119.99990 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00166 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99762 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46822 * 60.00850 * 12 10 9 14 14 C 1.52997 * 109.47238 * 300.00068 * 12 10 9 15 15 C 1.50708 * 109.46685 * 180.02562 * 12 10 9 16 16 H 1.07995 * 119.99755 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99729 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99909 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48498 * 109.46866 * 210.00208 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 C 1.38086 * 119.96201 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47487 * 269.98041 * 1 2 3 25 25 H 1.08998 * 109.47205 * 29.97826 * 1 2 3 26 26 H 1.09003 * 109.47389 * 149.97435 * 1 2 3 27 27 H 1.08005 * 119.92342 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.96058 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47414 * 270.25905 * 6 5 4 30 30 H 1.09001 * 109.47075 * 30.25641 * 6 5 4 31 31 H 1.08999 * 109.47575 * 150.25649 * 6 5 4 32 32 H 0.96999 * 119.99967 * 359.72807 * 8 7 5 33 33 H 0.96999 * 119.99963 * 0.02562 * 9 8 7 34 34 H 1.09002 * 109.47153 * 180.02562 * 14 12 10 35 35 H 1.09001 * 109.46832 * 60.00314 * 14 12 10 36 36 H 1.09004 * 109.47261 * 300.00295 * 14 12 10 37 37 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.03411 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2765 0.0096 0.0044 6 6 5.7834 0.0154 0.0102 7 6 3.5859 -1.1955 -0.0014 8 7 4.2866 -2.4038 -0.0020 9 7 3.5884 -3.6184 -0.0018 10 6 4.2645 -4.7843 -0.0018 11 8 5.4773 -4.7820 -0.0015 12 6 3.5135 -6.0909 -0.0023 13 1 2.8873 -6.1496 -0.8925 14 6 2.6336 -6.1738 1.2466 15 6 4.4950 -7.2344 -0.0016 16 1 5.5564 -7.0350 -0.0004 17 6 4.0379 -8.5352 -0.0013 18 7 2.7454 -8.7780 -0.0022 19 14 5.2546 -9.9527 -0.0011 20 1 5.5769 -10.3280 1.3990 21 1 4.6568 -11.1181 -0.7009 22 1 6.4970 -9.5388 -0.7012 23 6 2.1966 -1.1963 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6560 2.1325 0.0004 28 1 4.1167 2.1400 -0.0001 29 1 6.1507 0.0195 -1.0161 30 1 6.1413 0.9054 0.5277 31 1 6.1482 -0.8745 0.5231 32 1 5.2565 -2.4019 -0.0023 33 1 2.6184 -3.6202 -0.0018 34 1 2.0907 -7.1190 1.2465 35 1 1.9237 -5.3467 1.2465 36 1 3.2599 -6.1150 2.1369 37 1 2.4238 -9.6931 -0.0016 38 1 1.6565 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830791793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:07 Heat of formation + Delta-G solvation = 9.489271 kcal Electronic energy + Delta-G solvation = -19222.004613 eV Core-core repulsion = 16258.054038 eV Total energy + Delta-G solvation = -2963.950575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92761 -38.71052 -35.65594 -33.87833 -33.78089 -31.56945 -30.29278 -29.28745 -28.03389 -25.22284 -24.77972 -23.19473 -21.74637 -21.17919 -19.48096 -17.62149 -16.80484 -16.15667 -15.52823 -15.34348 -14.83189 -14.57216 -14.44127 -13.99005 -13.69741 -13.33665 -13.22988 -12.80051 -12.70543 -12.57974 -12.18748 -11.97413 -11.63587 -11.24123 -11.09464 -10.99519 -10.95477 -10.80442 -10.72728 -10.36523 -10.04754 -9.08557 -8.98139 -8.88210 -8.52056 -8.43635 -6.91770 -6.10822 -4.14704 1.41350 1.65020 2.44578 3.30280 3.36241 3.43368 3.51920 3.86707 4.39181 4.61748 4.81898 4.87165 5.06112 5.18639 5.22850 5.36059 5.55003 5.56327 5.61362 5.63439 5.72275 5.84896 5.90561 6.02957 6.17994 6.36349 6.50582 6.59758 6.70258 6.71835 6.79152 6.92726 7.24051 7.39581 7.67667 7.76569 7.99308 8.07941 8.29313 8.94119 9.09959 9.51221 10.96809 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032050 B = 0.004260 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.426389 B = 6571.427218 C = 7344.507930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.038 4.038 3 C -0.186 4.186 4 C -0.064 4.064 5 C -0.171 4.171 6 C -0.107 4.107 7 C 0.231 3.769 8 N -0.543 5.543 9 N -0.542 5.542 10 C 0.520 3.480 11 O -0.546 6.546 12 C 0.042 3.958 13 H 0.058 0.942 14 C -0.136 4.136 15 C -0.503 4.503 16 H 0.076 0.924 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.903 3.097 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.203 4.203 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.430 0.570 33 H 0.416 0.584 34 H 0.097 0.903 35 H 0.012 0.988 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 17.736 0.300 18.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.039 4.039 3 C -0.206 4.206 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.164 4.164 7 C 0.125 3.875 8 N -0.266 5.266 9 N -0.291 5.291 10 C 0.309 3.691 11 O -0.420 6.420 12 C 0.020 3.980 13 H 0.075 0.925 14 C -0.194 4.194 15 C -0.542 4.542 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.731 3.269 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.226 4.226 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.274 0.726 33 H 0.258 0.742 34 H 0.116 0.884 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.000 17.330 0.292 17.590 hybrid contribution 0.430 -0.759 0.035 0.873 sum -2.570 16.571 0.327 16.773 Atomic orbital electron populations 1.20806 0.91417 1.02675 1.02297 1.19574 0.95575 0.92456 0.96247 1.20684 0.93959 0.97073 1.08906 1.20680 0.93918 0.96350 0.97329 1.19185 0.95739 0.91211 1.11543 1.20597 0.91396 1.02369 1.02022 1.17597 0.91383 0.84093 0.94472 1.43613 1.06776 0.94681 1.81518 1.45715 1.08161 0.96293 1.78919 1.22512 0.89098 0.83942 0.73520 1.90544 1.14754 1.86957 1.49727 1.18886 0.95508 0.86392 0.97261 0.92464 1.21807 0.98216 1.02183 0.97161 1.21095 0.93545 0.89010 1.50545 0.90633 1.24941 0.95435 0.98872 0.94869 1.69862 1.12408 1.20349 1.50785 0.86399 0.81182 0.81149 0.78196 1.20595 1.21202 1.19705 1.20309 0.91744 0.98195 1.12364 0.91134 0.91626 0.91490 0.86642 0.86211 0.91569 0.91438 0.92226 0.72630 0.74226 0.88440 0.96863 0.94701 0.92795 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 10.01 36.00 0.36 -0.69 16 2 C -0.04 -0.45 5.88 -104.65 -0.62 -1.06 16 3 C -0.19 -2.07 9.70 -39.55 -0.38 -2.46 16 4 C -0.06 -0.72 9.70 -39.61 -0.38 -1.11 16 5 C -0.17 -2.19 5.90 -104.42 -0.62 -2.81 16 6 C -0.11 -1.17 9.57 36.00 0.34 -0.83 16 7 C 0.23 3.38 6.70 -83.79 -0.56 2.82 16 8 N -0.54 -9.01 6.35 32.41 0.21 -8.80 16 9 N -0.54 -9.85 6.11 31.22 0.19 -9.66 16 10 C 0.52 11.73 7.27 -10.98 -0.08 11.65 16 11 O -0.55 -13.96 15.30 5.56 0.09 -13.87 16 12 C 0.04 1.02 2.64 -92.92 -0.25 0.78 16 13 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 14 C -0.14 -3.03 8.86 37.16 0.33 -2.70 16 15 C -0.50 -13.99 8.37 -34.44 -0.29 -14.27 16 16 H 0.08 2.22 6.75 -52.49 -0.35 1.86 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 19 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 23 C -0.20 -2.77 9.13 -39.38 -0.36 -3.13 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 31 H 0.06 0.69 6.55 -51.93 -0.34 0.35 16 32 H 0.43 7.23 6.00 -182.60 -1.10 6.14 16 33 H 0.42 6.62 6.02 -182.60 -1.10 5.52 16 34 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 35 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.12 1.52 6.20 -52.48 -0.33 1.20 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -30.30 315.37 -8.61 -38.90 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.85 Total: 8.40 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.59 Total: -12.26 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 1.02 Total: -42.36 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.30 -8.61 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830791793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.391 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds