Wall clock time and date at job start Mon Mar 30 2020 06:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38307 * 119.96641 * 2 1 4 4 C 1.38261 * 120.15104 * 180.02562 * 3 2 1 5 5 C 1.38129 * 120.07571 * 359.73887 * 4 3 2 6 6 C 1.50693 * 120.03995 * 180.27984 * 5 4 3 7 7 C 1.38891 * 119.92163 * 0.53687 * 5 4 3 8 8 N 1.39678 * 120.07441 * 179.74003 * 7 5 4 9 9 N 1.40095 * 120.00071 * 179.71798 * 8 7 5 10 10 C 1.34777 * 119.99990 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00166 * 0.02562 * 10 9 8 12 12 C 1.50706 * 119.99762 * 180.02562 * 10 9 8 13 13 H 1.08996 * 109.46822 * 60.00850 * 12 10 9 14 14 C 1.52997 * 109.47238 * 300.00068 * 12 10 9 15 15 C 1.50708 * 109.46685 * 180.02562 * 12 10 9 16 16 H 1.07995 * 119.99755 * 0.02562 * 15 12 10 17 17 C 1.37873 * 119.99729 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99909 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99980 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46755 * 90.00221 * 19 17 15 21 21 H 1.48498 * 109.46866 * 210.00208 * 19 17 15 22 22 H 1.48496 * 109.47178 * 330.00271 * 19 17 15 23 23 C 1.38086 * 119.96201 * 180.02562 * 2 1 3 24 24 H 1.09005 * 109.47487 * 269.98041 * 1 2 3 25 25 H 1.08998 * 109.47205 * 29.97826 * 1 2 3 26 26 H 1.09003 * 109.47389 * 149.97435 * 1 2 3 27 27 H 1.08005 * 119.92342 * 0.02562 * 3 2 1 28 28 H 1.07999 * 119.96058 * 180.02562 * 4 3 2 29 29 H 1.09003 * 109.47414 * 270.25905 * 6 5 4 30 30 H 1.09001 * 109.47075 * 30.25641 * 6 5 4 31 31 H 1.08999 * 109.47575 * 150.25649 * 6 5 4 32 32 H 0.96999 * 119.99967 * 359.72807 * 8 7 5 33 33 H 0.96999 * 119.99963 * 0.02562 * 9 8 7 34 34 H 1.09002 * 109.47153 * 180.02562 * 14 12 10 35 35 H 1.09001 * 109.46832 * 60.00314 * 14 12 10 36 36 H 1.09004 * 109.47261 * 300.00295 * 14 12 10 37 37 H 0.97002 * 119.99804 * 180.02562 * 18 17 15 38 38 H 1.08004 * 120.03411 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2026 -0.0005 5 6 4.2765 0.0096 0.0044 6 6 5.7834 0.0154 0.0102 7 6 3.5859 -1.1955 -0.0014 8 7 4.2866 -2.4038 -0.0020 9 7 3.5884 -3.6184 -0.0018 10 6 4.2645 -4.7843 -0.0018 11 8 5.4773 -4.7820 -0.0015 12 6 3.5135 -6.0909 -0.0023 13 1 2.8873 -6.1496 -0.8925 14 6 2.6336 -6.1738 1.2466 15 6 4.4950 -7.2344 -0.0016 16 1 5.5564 -7.0350 -0.0004 17 6 4.0379 -8.5352 -0.0013 18 7 2.7454 -8.7780 -0.0022 19 14 5.2546 -9.9527 -0.0011 20 1 5.5769 -10.3280 1.3990 21 1 4.6568 -11.1181 -0.7009 22 1 6.4970 -9.5388 -0.7012 23 6 2.1966 -1.1963 -0.0005 24 1 -0.3634 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6560 2.1325 0.0004 28 1 4.1167 2.1400 -0.0001 29 1 6.1507 0.0195 -1.0161 30 1 6.1413 0.9054 0.5277 31 1 6.1482 -0.8745 0.5231 32 1 5.2565 -2.4019 -0.0023 33 1 2.6184 -3.6202 -0.0018 34 1 2.0907 -7.1190 1.2465 35 1 1.9237 -5.3467 1.2465 36 1 3.2599 -6.1150 2.1369 37 1 2.4238 -9.6931 -0.0016 38 1 1.6565 -2.1316 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830791793.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:06 Heat of formation + Delta-G solvation = -8.078728 kcal Electronic energy + Delta-G solvation = -19222.766419 eV Core-core repulsion = 16258.054038 eV Total energy + Delta-G solvation = -2964.712381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18005 -40.16800 -36.99790 -35.84748 -34.81286 -33.14566 -31.88030 -30.11129 -29.26163 -27.23740 -25.65772 -24.80681 -22.99624 -22.38744 -20.92244 -19.01946 -18.32343 -18.06982 -16.95014 -16.48774 -16.33164 -16.13683 -15.73963 -15.16358 -14.97972 -14.71882 -14.47971 -14.07618 -13.72568 -13.65454 -13.39926 -13.25468 -13.00721 -12.75367 -12.73153 -12.63731 -12.29255 -12.12720 -12.04502 -12.02282 -11.85252 -11.10263 -10.76528 -10.46432 -10.23980 -9.46149 -8.18596 -8.14075 -6.28996 0.47507 0.65276 1.05669 1.41126 1.42306 1.54169 1.76326 2.42476 2.90027 3.12024 3.30825 3.89821 3.94765 4.12577 4.21405 4.36427 4.55109 4.62116 4.68149 4.76791 4.79595 4.86405 4.88367 4.91043 4.93248 5.01259 5.17948 5.31007 5.41588 5.43983 5.63797 5.68771 5.72643 5.81188 5.90310 6.11005 6.23394 6.47094 6.73484 6.81756 7.36303 7.48593 8.87785 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032050 B = 0.004260 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.426389 B = 6571.427218 C = 7344.507930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.046 4.046 3 C -0.180 4.180 4 C -0.066 4.066 5 C -0.177 4.177 6 C -0.107 4.107 7 C 0.202 3.798 8 N -0.552 5.552 9 N -0.523 5.523 10 C 0.521 3.479 11 O -0.584 6.584 12 C 0.039 3.961 13 H 0.050 0.950 14 C -0.123 4.123 15 C -0.531 4.531 16 H 0.050 0.950 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.274 1.274 22 H -0.279 1.279 23 C -0.218 4.218 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.046 0.954 32 H 0.426 0.574 33 H 0.428 0.572 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.267 0.733 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 19.729 0.446 20.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.047 4.047 3 C -0.200 4.200 4 C -0.085 4.085 5 C -0.182 4.182 6 C -0.164 4.164 7 C 0.099 3.901 8 N -0.278 5.278 9 N -0.270 5.270 10 C 0.310 3.690 11 O -0.462 6.462 12 C 0.016 3.984 13 H 0.067 0.933 14 C -0.181 4.181 15 C -0.570 4.570 16 H 0.069 0.931 17 C -0.177 4.177 18 N -0.547 5.547 19 Si 0.783 3.217 20 H -0.200 1.200 21 H -0.199 1.199 22 H -0.204 1.204 23 C -0.241 4.241 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.269 0.731 33 H 0.271 0.729 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.046 19.383 0.439 19.805 hybrid contribution 0.646 -1.183 -0.026 1.348 sum -3.401 18.200 0.413 18.519 Atomic orbital electron populations 1.20859 0.89478 1.03613 1.03137 1.19943 0.97128 0.92085 0.95561 1.21115 0.94187 0.97922 1.06789 1.21071 0.94313 0.96842 0.96227 1.19511 0.96739 0.91109 1.10883 1.20636 0.90423 1.02828 1.02479 1.17910 0.91981 0.83770 0.96443 1.43647 1.06564 0.94176 1.83431 1.45185 1.08518 0.96558 1.76767 1.21999 0.88383 0.84756 0.73887 1.90516 1.16116 1.87607 1.51962 1.18778 0.95120 0.86802 0.97704 0.93251 1.21626 0.98155 1.02615 0.95712 1.21226 0.93095 0.90884 1.51747 0.93128 1.25569 0.97052 1.00692 0.94380 1.69934 1.13272 1.21002 1.50528 0.85562 0.79032 0.78726 0.78366 1.19965 1.19904 1.20400 1.20517 0.91583 0.99161 1.12843 0.90234 0.89829 0.91498 0.83865 0.83289 0.91110 0.89201 0.93500 0.73082 0.72892 0.90464 0.93058 0.95616 0.92421 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.23 0.71 -1.06 16 2 C -0.05 -0.99 5.88 -19.89 -0.12 -1.11 16 3 C -0.18 -3.41 9.70 22.29 0.22 -3.19 16 4 C -0.07 -1.29 9.70 22.25 0.22 -1.07 16 5 C -0.18 -4.26 5.90 -19.74 -0.12 -4.38 16 6 C -0.11 -2.21 9.57 71.23 0.68 -1.52 16 7 C 0.20 5.78 6.70 38.21 0.26 6.04 16 8 N -0.55 -18.51 6.35 -51.37 -0.33 -18.84 16 9 N -0.52 -19.18 6.11 -173.53 -1.06 -20.24 16 10 C 0.52 24.11 7.27 87.66 0.64 24.75 16 11 O -0.58 -31.01 15.30 -3.03 -0.05 -31.06 16 12 C 0.04 1.92 2.64 -12.28 -0.03 1.88 16 13 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 14 C -0.12 -5.51 8.86 71.98 0.64 -4.87 16 15 C -0.53 -30.35 8.37 25.60 0.21 -30.13 16 16 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16 17 C 0.02 1.25 5.30 84.65 0.45 1.70 16 18 N -0.91 -49.97 11.32 21.45 0.24 -49.73 16 19 Si 0.96 44.37 29.54 68.60 2.03 46.39 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 C -0.22 -5.70 9.13 22.40 0.20 -5.50 16 24 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 26 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 27 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 31 H 0.05 1.09 6.55 -2.39 -0.02 1.07 16 32 H 0.43 14.76 6.00 -213.32 -1.28 13.48 16 33 H 0.43 13.47 6.02 -213.32 -1.28 12.19 16 34 H 0.08 3.80 6.07 -2.39 -0.01 3.78 16 35 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 36 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.12 2.94 6.20 -2.91 -0.02 2.92 16 Total: -1.00 -65.94 315.37 3.31 -62.62 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -1.48 Total: 29.30 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 3.96 Total: -18.46 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -1.14 Total: -88.80 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.06 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.94 3.31 -62.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830791793.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.546 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds