Wall clock time and date at job start Mon Mar 30 2020 06:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46768 * 2 1 4 4 C 1.50701 * 109.47135 * 119.99500 * 2 1 3 5 5 C 1.38404 * 120.44588 * 304.99815 * 4 2 1 6 6 C 1.38802 * 118.49109 * 180.28237 * 5 4 2 7 7 C 1.38117 * 119.30612 * 359.43665 * 6 5 4 8 8 N 1.31896 * 120.85059 * 0.27453 * 7 6 5 9 9 C 1.32380 * 121.63479 * 0.02562 * 8 7 6 10 10 N 1.39409 * 119.69531 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00226 * 354.68062 * 10 9 8 12 12 O 1.21287 * 119.99539 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00417 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46797 * 60.00713 * 13 11 10 15 15 C 1.52994 * 109.47571 * 300.00504 * 13 11 10 16 16 C 1.50702 * 109.47120 * 180.02562 * 13 11 10 17 17 H 1.07996 * 120.00333 * 0.02562 * 16 13 11 18 18 C 1.37884 * 119.99772 * 180.02562 * 16 13 11 19 19 N 1.31517 * 119.99845 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99851 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46936 * 120.00215 * 20 18 16 23 23 H 1.48497 * 109.47112 * 240.00490 * 20 18 16 24 24 H 1.08995 * 109.47529 * 300.00254 * 1 2 3 25 25 H 1.09000 * 109.46807 * 60.00598 * 1 2 3 26 26 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47529 * 239.99746 * 2 1 3 28 28 H 1.09002 * 109.47130 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46968 * 299.99303 * 3 2 1 30 30 H 1.08996 * 109.47768 * 59.99864 * 3 2 1 31 31 H 1.08003 * 120.75747 * 359.97438 * 5 4 2 32 32 H 1.07996 * 120.34409 * 179.71278 * 6 5 4 33 33 H 1.08003 * 119.57437 * 180.25768 * 7 6 5 34 34 H 0.96999 * 120.00660 * 174.68528 * 10 9 8 35 35 H 1.08998 * 109.47832 * 179.97438 * 15 13 11 36 36 H 1.09002 * 109.47230 * 299.99943 * 15 13 11 37 37 H 1.09011 * 109.47195 * 59.99469 * 15 13 11 38 38 H 0.96996 * 119.99439 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6209 -0.3084 2.4894 6 6 2.1136 -0.9875 3.5952 7 6 2.9838 -2.0435 3.4076 8 7 3.3537 -2.4079 2.1951 9 6 2.9105 -1.7816 1.1163 10 7 3.3283 -2.2004 -0.1460 11 6 4.2608 -3.1668 -0.2610 12 8 4.7360 -3.6723 0.7339 13 6 4.7121 -3.6200 -1.6254 14 1 5.1403 -2.7755 -2.1655 15 6 3.5140 -4.1682 -2.4030 16 6 5.7515 -4.7011 -1.4774 17 1 6.0546 -5.0277 -0.4936 18 6 6.3155 -5.2733 -2.5980 19 7 5.9467 -4.8752 -3.7960 20 14 7.6033 -6.6139 -2.4145 21 1 7.8401 -6.8788 -0.9725 22 1 7.1229 -7.8552 -3.0729 23 1 8.8703 -6.1738 -3.0519 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 0.9360 0.5181 2.6089 32 1 1.8160 -0.6960 4.5916 33 1 3.3665 -2.5776 4.2647 34 1 2.9481 -1.7964 -0.9416 35 1 3.8403 -4.4955 -3.3902 36 1 3.0859 -5.0126 -1.8630 37 1 2.7618 -3.3864 -2.5101 38 1 6.3438 -5.2775 -4.5842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831017272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:52 Heat of formation + Delta-G solvation = -3.195649 kcal Electronic energy + Delta-G solvation = -19769.762722 eV Core-core repulsion = 16805.262087 eV Total energy + Delta-G solvation = -2964.500634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62748 -38.41679 -35.99302 -34.21514 -33.74016 -31.33620 -30.53991 -29.00869 -27.25547 -25.16477 -24.40753 -23.62352 -21.85872 -20.26551 -19.48631 -18.00008 -16.38319 -16.04304 -15.70777 -15.13969 -14.69985 -14.57514 -14.36075 -14.03257 -13.60883 -13.25463 -13.04185 -12.86647 -12.49635 -12.38365 -12.29116 -11.60750 -11.39523 -11.31592 -11.03196 -10.81427 -10.76656 -10.67603 -10.43287 -10.12400 -9.97065 -9.43027 -9.31026 -8.99181 -8.46775 -8.19657 -7.81363 -6.04883 -4.07877 1.33025 1.54537 3.32864 3.40057 3.44504 3.53276 3.63130 4.22519 4.45621 4.53756 4.66879 4.93507 5.03154 5.08310 5.15201 5.28019 5.28964 5.48513 5.50460 5.68747 5.69600 5.82512 5.91571 5.97641 6.07910 6.13476 6.27476 6.39392 6.56086 6.64207 6.77496 6.87024 7.15436 7.42436 7.66880 7.82420 8.02153 8.24261 8.54858 9.01796 9.18192 9.57986 11.02945 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.005204 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.006036 B = 5379.314211 C = 6101.533056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C -0.142 4.142 4 C -0.178 4.178 5 C -0.046 4.046 6 C -0.221 4.221 7 C 0.128 3.872 8 N -0.474 5.474 9 C 0.378 3.622 10 N -0.671 5.671 11 C 0.505 3.495 12 O -0.474 6.474 13 C 0.032 3.968 14 H 0.054 0.946 15 C -0.134 4.134 16 C -0.500 4.500 17 H 0.076 0.924 18 C 0.058 3.942 19 N -0.897 5.897 20 Si 0.901 3.099 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.153 0.847 34 H 0.410 0.590 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.010 0.990 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 12.168 7.484 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.184 4.184 5 C -0.072 4.072 6 C -0.243 4.243 7 C -0.031 4.031 8 N -0.188 5.188 9 C 0.146 3.854 10 N -0.319 5.319 11 C 0.293 3.707 12 O -0.341 6.341 13 C 0.010 3.990 14 H 0.072 0.928 15 C -0.192 4.192 16 C -0.539 4.539 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.536 5.536 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.170 0.830 34 H 0.249 0.751 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.030 0.970 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.530 10.949 7.806 17.079 hybrid contribution -0.143 0.234 -0.228 0.356 sum -10.673 11.182 7.578 17.216 Atomic orbital electron populations 1.21856 0.94147 1.02137 1.01831 1.19954 0.96061 0.96004 0.94834 1.21844 1.01484 0.94802 1.01795 1.20221 1.02869 0.99029 0.96300 1.21081 0.97015 0.97964 0.91182 1.21914 1.02872 1.00114 0.99397 1.22671 0.92787 0.93444 0.94180 1.67820 1.24449 1.28872 0.97674 1.18606 0.90428 0.89477 0.86937 1.44531 1.42123 1.40128 1.05162 1.22388 0.76797 0.76932 0.94557 1.90644 1.52047 1.51779 1.39669 1.18927 0.95581 0.98159 0.86290 0.92795 1.21772 0.95147 0.98125 1.04146 1.21172 1.20130 1.18661 0.93905 0.90600 1.24946 0.97011 0.97178 0.95074 1.69876 1.43295 1.43028 0.97417 0.86376 0.81013 0.81320 0.78451 1.19491 1.21028 1.21029 0.92510 0.92214 0.92452 0.90724 0.92414 0.92202 0.92548 0.85279 0.85402 0.83005 0.75088 0.88577 0.94802 0.97050 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.96 37.16 0.33 -0.96 16 2 C -0.05 -0.54 3.05 -91.77 -0.28 -0.82 16 3 C -0.14 -1.34 9.06 37.16 0.34 -1.01 16 4 C -0.18 -2.44 4.81 -104.28 -0.50 -2.94 16 5 C -0.05 -0.55 8.89 -39.31 -0.35 -0.89 16 6 C -0.22 -2.66 10.11 -39.42 -0.40 -3.06 16 7 C 0.13 1.94 11.18 -17.57 -0.20 1.75 16 8 N -0.47 -9.35 7.89 -12.37 -0.10 -9.44 16 9 C 0.38 6.79 7.40 -154.69 -1.15 5.65 16 10 N -0.67 -12.67 5.21 -11.43 -0.06 -12.73 16 11 C 0.50 11.95 7.11 -10.99 -0.08 11.87 16 12 O -0.47 -12.87 13.72 5.55 0.08 -12.79 16 13 C 0.03 0.79 2.64 -92.93 -0.25 0.55 16 14 H 0.05 1.38 8.14 -51.93 -0.42 0.95 16 15 C -0.13 -3.07 8.86 37.15 0.33 -2.74 16 16 C -0.50 -14.27 8.37 -34.44 -0.29 -14.56 16 17 H 0.08 2.30 6.75 -52.49 -0.35 1.95 16 18 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 19 N -0.90 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H 0.06 0.45 7.19 -51.93 -0.37 0.08 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.84 5.69 -51.93 -0.30 0.54 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.48 7.77 -51.93 -0.40 0.07 16 31 H 0.13 1.13 7.25 -52.48 -0.38 0.75 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 34 H 0.41 6.46 5.75 -40.82 -0.23 6.23 16 35 H 0.10 2.41 6.07 -51.93 -0.32 2.09 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -32.81 312.07 -7.62 -40.43 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.27 Total: 2.99 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.58 Total: -5.62 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.47 Total: -46.61 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.08 Total: -12.79 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.81 -7.62 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831017272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.231 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds