Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46768 * 2 1 4 4 C 1.50701 * 109.47135 * 119.99500 * 2 1 3 5 5 C 1.38404 * 120.44588 * 304.99815 * 4 2 1 6 6 C 1.38802 * 118.49109 * 180.28237 * 5 4 2 7 7 C 1.38117 * 119.30612 * 359.43665 * 6 5 4 8 8 N 1.31896 * 120.85059 * 0.27453 * 7 6 5 9 9 C 1.32380 * 121.63479 * 0.02562 * 8 7 6 10 10 N 1.39409 * 119.69531 * 179.97438 * 9 8 7 11 11 C 1.34782 * 120.00226 * 354.68062 * 10 9 8 12 12 O 1.21287 * 119.99539 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00417 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.46797 * 60.00713 * 13 11 10 15 15 C 1.52994 * 109.47571 * 300.00504 * 13 11 10 16 16 C 1.50702 * 109.47120 * 180.02562 * 13 11 10 17 17 H 1.07996 * 120.00333 * 0.02562 * 16 13 11 18 18 C 1.37884 * 119.99772 * 180.02562 * 16 13 11 19 19 N 1.31517 * 119.99845 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 119.99851 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.46936 * 120.00215 * 20 18 16 23 23 H 1.48497 * 109.47112 * 240.00490 * 20 18 16 24 24 H 1.08995 * 109.47529 * 300.00254 * 1 2 3 25 25 H 1.09000 * 109.46807 * 60.00598 * 1 2 3 26 26 H 1.09002 * 109.47054 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47529 * 239.99746 * 2 1 3 28 28 H 1.09002 * 109.47130 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46968 * 299.99303 * 3 2 1 30 30 H 1.08996 * 109.47768 * 59.99864 * 3 2 1 31 31 H 1.08003 * 120.75747 * 359.97438 * 5 4 2 32 32 H 1.07996 * 120.34409 * 179.71278 * 6 5 4 33 33 H 1.08003 * 119.57437 * 180.25768 * 7 6 5 34 34 H 0.96999 * 120.00660 * 174.68528 * 10 9 8 35 35 H 1.08998 * 109.47832 * 179.97438 * 15 13 11 36 36 H 1.09002 * 109.47230 * 299.99943 * 15 13 11 37 37 H 1.09011 * 109.47195 * 59.99469 * 15 13 11 38 38 H 0.96996 * 119.99439 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6209 -0.3084 2.4894 6 6 2.1136 -0.9875 3.5952 7 6 2.9838 -2.0435 3.4076 8 7 3.3537 -2.4079 2.1951 9 6 2.9105 -1.7816 1.1163 10 7 3.3283 -2.2004 -0.1460 11 6 4.2608 -3.1668 -0.2610 12 8 4.7360 -3.6723 0.7339 13 6 4.7121 -3.6200 -1.6254 14 1 5.1403 -2.7755 -2.1655 15 6 3.5140 -4.1682 -2.4030 16 6 5.7515 -4.7011 -1.4774 17 1 6.0546 -5.0277 -0.4936 18 6 6.3155 -5.2733 -2.5980 19 7 5.9467 -4.8752 -3.7960 20 14 7.6033 -6.6139 -2.4145 21 1 7.8401 -6.8788 -0.9725 22 1 7.1229 -7.8552 -3.0729 23 1 8.8703 -6.1738 -3.0519 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 0.9360 0.5181 2.6089 32 1 1.8160 -0.6960 4.5916 33 1 3.3665 -2.5776 4.2647 34 1 2.9481 -1.7964 -0.9416 35 1 3.8403 -4.4955 -3.3902 36 1 3.0859 -5.0126 -1.8630 37 1 2.7618 -3.3864 -2.5101 38 1 6.3438 -5.2775 -4.5842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831017272.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -23.272986 kcal Electronic energy + Delta-G solvation = -19770.633340 eV Core-core repulsion = 16805.262087 eV Total energy + Delta-G solvation = -2965.371253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.90590 -40.03768 -36.96169 -35.86585 -35.63647 -32.81931 -32.10651 -30.26442 -27.94953 -27.24837 -25.67722 -24.97743 -23.39763 -21.22674 -21.07504 -19.36632 -18.27772 -17.77837 -17.02664 -16.40151 -16.34988 -16.05461 -15.63061 -15.17450 -14.94638 -14.76003 -14.41186 -14.11772 -13.82277 -13.52420 -13.28813 -12.99740 -12.96669 -12.74028 -12.62721 -12.29149 -12.21502 -12.09366 -12.05278 -11.69250 -11.61059 -11.08879 -10.83347 -10.53356 -10.51404 -9.79577 -9.08034 -8.18286 -6.28563 0.18900 0.46751 1.38156 1.39922 1.53798 1.92670 2.06653 2.44120 2.99776 3.11675 3.50300 3.76291 3.86497 4.11720 4.15581 4.30422 4.32021 4.40216 4.60024 4.68395 4.82146 4.86764 4.87329 4.93860 4.99172 5.02614 5.10631 5.16375 5.34178 5.42034 5.43106 5.45427 5.46774 5.70268 5.83832 5.97574 6.13691 6.41091 6.78710 7.20549 7.37358 7.54569 8.88035 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.005204 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.006036 B = 5379.314211 C = 6101.533056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.162 4.162 5 C -0.045 4.045 6 C -0.193 4.193 7 C 0.098 3.902 8 N -0.530 5.530 9 C 0.332 3.668 10 N -0.660 5.660 11 C 0.509 3.491 12 O -0.522 6.522 13 C 0.028 3.972 14 H 0.045 0.955 15 C -0.120 4.120 16 C -0.530 4.530 17 H 0.046 0.954 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.957 3.043 21 H -0.282 1.282 22 H -0.272 1.272 23 H -0.272 1.272 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.164 0.836 34 H 0.423 0.577 35 H 0.076 0.924 36 H 0.021 0.979 37 H 0.051 0.949 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.632 14.271 8.034 21.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.167 4.167 5 C -0.071 4.071 6 C -0.214 4.214 7 C -0.060 4.060 8 N -0.245 5.245 9 C 0.102 3.898 10 N -0.310 5.310 11 C 0.297 3.703 12 O -0.394 6.394 13 C 0.007 3.993 14 H 0.063 0.937 15 C -0.178 4.178 16 C -0.568 4.568 17 H 0.065 0.935 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.782 3.218 21 H -0.207 1.207 22 H -0.197 1.197 23 H -0.198 1.198 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.190 0.810 32 H 0.188 0.812 33 H 0.181 0.819 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.040 0.960 37 H 0.070 0.930 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.609 13.100 8.353 20.009 hybrid contribution 0.405 -0.306 -0.298 0.589 sum -12.204 12.794 8.055 19.430 Atomic orbital electron populations 1.21838 0.92201 1.01910 1.03575 1.20077 0.97557 0.96483 0.93070 1.21829 1.00337 0.93865 1.03532 1.20546 1.00639 0.97023 0.98540 1.21615 0.96921 0.98591 0.89946 1.22354 0.99907 0.97581 1.01600 1.23033 0.94427 0.95329 0.93168 1.67595 1.26319 1.31041 0.99536 1.18837 0.93179 0.91891 0.85908 1.44025 1.41151 1.39041 1.06767 1.21989 0.77408 0.77586 0.93272 1.90609 1.54212 1.53940 1.40618 1.18844 0.95764 0.97048 0.87626 0.93679 1.21575 0.95197 0.98847 1.02171 1.21263 1.22111 1.20498 0.92931 0.93548 1.25576 0.98532 0.98869 0.94771 1.69941 1.43674 1.43501 0.97708 0.85523 0.79216 0.79310 0.77712 1.20719 1.19733 1.19758 0.90714 0.90599 0.93657 0.91715 0.94227 0.90492 0.90850 0.80987 0.81239 0.81897 0.73608 0.90532 0.95972 0.92998 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.96 71.98 0.64 -1.35 16 2 C -0.05 -1.01 3.05 -11.54 -0.04 -1.04 16 3 C -0.14 -2.18 9.06 71.98 0.65 -1.53 16 4 C -0.16 -4.11 4.81 -19.64 -0.09 -4.20 16 5 C -0.05 -0.88 8.89 22.44 0.20 -0.68 16 6 C -0.19 -4.01 10.11 22.38 0.23 -3.78 16 7 C 0.10 2.92 11.18 84.65 0.95 3.87 16 8 N -0.53 -21.52 7.89 -193.05 -1.52 -23.05 16 9 C 0.33 12.06 7.40 132.89 0.98 13.04 16 10 N -0.66 -25.62 5.21 -308.46 -1.61 -27.22 16 11 C 0.51 25.28 7.11 87.65 0.62 25.90 16 12 O -0.52 -30.16 13.72 -3.05 -0.04 -30.21 16 13 C 0.03 1.48 2.64 -12.29 -0.03 1.45 16 14 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 15 C -0.12 -5.59 8.86 71.98 0.64 -4.95 16 16 C -0.53 -31.56 8.37 25.60 0.21 -31.35 16 17 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 18 C 0.02 1.24 5.30 84.66 0.45 1.69 16 19 N -0.91 -51.30 11.32 21.45 0.24 -51.06 16 20 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 21 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H 0.07 0.81 7.19 -2.39 -0.02 0.80 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 1.36 5.69 -2.39 -0.01 1.35 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 0.91 7.77 -2.39 -0.02 0.89 16 31 H 0.17 1.93 7.25 -2.91 -0.02 1.91 16 32 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 33 H 0.16 4.16 8.06 -2.91 -0.02 4.13 16 34 H 0.42 13.43 5.75 -92.71 -0.53 12.90 16 35 H 0.08 3.88 6.07 -2.39 -0.01 3.87 16 36 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.93 7.57 -2.38 -0.02 1.91 16 38 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -75.51 312.07 5.04 -70.47 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.53 Total: 16.15 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.41 Total: -2.92 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.89 Total: -101.33 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.04 Total: -30.21 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -75.51 5.04 -70.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831017272.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.200 kcal (2) G-P(sol) polarization free energy of solvation -75.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds