Wall clock time and date at job start Mon Mar 30 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35836 * 117.00236 * 2 1 4 4 C 1.38501 * 120.13486 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.09696 * 180.02562 * 4 3 2 6 6 C 1.38426 * 120.37367 * 359.97438 * 5 4 3 7 7 C 1.37930 * 120.27060 * 359.73833 * 6 5 4 8 8 C 1.50700 * 120.05939 * 180.27529 * 7 6 5 9 9 C 1.39639 * 119.89150 * 0.54085 * 7 6 5 10 10 C 1.47447 * 120.18207 * 179.74407 * 9 7 6 11 11 N 1.29752 * 120.00032 * 179.71889 * 10 9 7 12 12 N 1.40096 * 120.00136 * 179.97438 * 11 10 9 13 13 C 1.46503 * 120.00388 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.46872 * 29.99961 * 13 12 11 15 15 C 1.52999 * 109.46772 * 270.00516 * 13 12 11 16 16 C 1.50693 * 109.47142 * 150.00283 * 13 12 11 17 17 H 1.08003 * 119.99968 * 5.62744 * 16 13 12 18 18 C 1.37878 * 119.99930 * 185.62515 * 16 13 12 19 19 N 1.31514 * 120.00028 * 197.20150 * 18 16 13 20 20 Si 1.86802 * 119.99709 * 17.48131 * 18 16 13 21 21 H 1.48502 * 109.46690 * 179.72405 * 20 18 16 22 22 H 1.48501 * 109.47068 * 299.72066 * 20 18 16 23 23 H 1.48495 * 109.47337 * 59.72245 * 20 18 16 24 24 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47066 * 300.00671 * 1 2 3 26 26 H 1.09001 * 109.47209 * 59.99987 * 1 2 3 27 27 H 1.08005 * 119.95225 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.81346 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.86809 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47409 * 270.26599 * 8 7 6 31 31 H 1.09007 * 109.46605 * 30.25958 * 8 7 6 32 32 H 1.08992 * 109.47451 * 150.25941 * 8 7 6 33 33 H 1.07997 * 119.99867 * 359.71827 * 10 9 7 34 34 H 0.97006 * 119.99599 * 0.02562 * 12 11 10 35 35 H 1.08996 * 109.47683 * 66.31724 * 15 13 12 36 36 H 1.09008 * 109.46590 * 186.31222 * 15 13 12 37 37 H 1.09000 * 109.47312 * 306.30889 * 15 13 12 38 38 H 0.96998 * 120.00391 * 355.16066 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2942 2.3737 -0.0005 5 6 1.9227 3.6049 -0.0011 6 6 3.3046 3.6854 -0.0005 7 6 4.0680 2.5366 0.0060 8 6 5.5721 2.6298 0.0128 9 6 3.4449 1.2870 0.0006 10 6 4.2547 0.0548 0.0018 11 7 3.6720 -1.1045 0.0024 12 7 4.4415 -2.2752 0.0030 13 6 3.7836 -3.5842 0.0030 14 1 2.8255 -3.5093 -0.5112 15 6 3.5539 -4.0395 1.4455 16 6 4.6578 -4.5858 -0.7067 17 1 5.6462 -4.3018 -1.0366 18 6 4.1957 -5.8646 -0.9349 19 7 5.0417 -6.8256 -1.2355 20 14 2.3672 -6.2306 -0.8246 21 1 2.1315 -7.6673 -1.1172 22 1 1.8814 -5.9178 0.5434 23 1 1.6352 -5.3977 -1.8123 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2156 2.3188 -0.0005 28 1 1.3322 4.5092 -0.0019 29 1 3.7871 4.6517 -0.0005 30 1 5.9393 2.6545 -1.0132 31 1 5.8773 3.5397 0.5298 32 1 5.9875 1.7631 0.5267 33 1 5.3329 0.1173 0.0023 34 1 5.4099 -2.2191 0.0034 35 1 2.8332 -3.3773 1.9252 36 1 3.1680 -5.0589 1.4477 37 1 4.4968 -4.0067 1.9914 38 1 5.9811 -6.6217 -1.3658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834965409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:43 Heat of formation + Delta-G solvation = 29.061902 kcal Electronic energy + Delta-G solvation = -19332.570921 eV Core-core repulsion = 16369.469079 eV Total energy + Delta-G solvation = -2963.101842 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01247 -37.47218 -36.39827 -34.14799 -32.56681 -31.64111 -30.24054 -27.55927 -27.38103 -26.34078 -24.71974 -23.22247 -21.12036 -20.11357 -19.95047 -17.80504 -17.36768 -16.66503 -15.79002 -15.49726 -15.15844 -14.63383 -13.97238 -13.70964 -13.62375 -13.51798 -13.09575 -12.71177 -12.58379 -12.20570 -12.17323 -11.88542 -11.73377 -11.53943 -11.37946 -10.99569 -10.81090 -10.77434 -10.46899 -9.98637 -9.76884 -9.30177 -9.05976 -8.72305 -8.29341 -8.11304 -6.84852 -6.49850 -4.17558 1.17475 1.55067 3.06738 3.36996 3.42772 3.50317 3.58423 3.81392 4.04713 4.42915 4.82108 4.88665 5.03515 5.20161 5.21505 5.27692 5.29501 5.33403 5.51021 5.63835 5.64777 5.70285 5.84831 6.04664 6.14214 6.36394 6.43154 6.50725 6.56883 6.66459 6.74145 6.81991 6.93178 7.15342 7.43170 7.66933 7.92822 8.08508 8.30907 8.84503 9.31240 9.51193 10.85072 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.004952 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.049587 B = 5652.738162 C = 6442.466511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.276 6.276 3 C 0.145 3.855 4 C -0.219 4.219 5 C -0.086 4.086 6 C -0.160 4.160 7 C -0.044 4.044 8 C -0.115 4.115 9 C -0.043 4.043 10 C -0.015 4.015 11 N -0.170 5.170 12 N -0.622 5.622 13 C 0.278 3.722 14 H 0.034 0.966 15 C -0.162 4.162 16 C -0.614 4.614 17 H 0.059 0.941 18 C 0.037 3.963 19 N -0.900 5.900 20 Si 1.045 2.955 21 H -0.284 1.284 22 H -0.271 1.271 23 H -0.281 1.281 24 H 0.099 0.901 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.369 0.631 35 H 0.027 0.973 36 H 0.060 0.940 37 H 0.041 0.959 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.275 19.657 3.382 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.186 6.186 3 C 0.097 3.903 4 C -0.237 4.237 5 C -0.106 4.106 6 C -0.178 4.178 7 C -0.047 4.047 8 C -0.172 4.172 9 C -0.045 4.045 10 C -0.223 4.223 11 N 0.017 4.983 12 N -0.358 5.358 13 C 0.173 3.827 14 H 0.052 0.948 15 C -0.221 4.221 16 C -0.653 4.653 17 H 0.077 0.923 18 C -0.169 4.169 19 N -0.534 5.534 20 Si 0.873 3.127 21 H -0.209 1.209 22 H -0.198 1.198 23 H -0.207 1.207 24 H 0.117 0.883 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.206 0.794 35 H 0.046 0.954 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.258 17.492 3.291 19.622 hybrid contribution 2.157 1.723 0.045 2.761 sum -6.101 19.215 3.337 20.435 Atomic orbital electron populations 1.23067 0.79752 1.03914 1.00462 1.86473 1.19791 1.25230 1.87118 1.19161 0.91576 0.84697 0.94894 1.21123 0.99799 0.92335 1.10488 1.20846 0.94501 0.96665 0.98552 1.20721 0.93584 0.97499 1.06047 1.19652 0.95896 0.91078 0.98071 1.20816 0.91070 1.02756 1.02526 1.17632 0.89131 0.91754 1.06032 1.23362 0.96233 0.90084 1.12572 1.74225 1.26946 0.94198 1.02919 1.48803 1.05230 1.00959 1.80826 1.18739 0.94269 0.77389 0.92254 0.94796 1.22612 0.99537 1.00389 0.99582 1.22132 1.02848 0.97747 1.42548 0.92302 1.25704 1.06179 0.91565 0.93441 1.70871 1.04990 1.32799 1.44707 0.84049 0.74880 0.76271 0.77529 1.20944 1.19768 1.20670 0.88291 0.93206 0.93163 0.85757 0.86280 0.86160 0.90937 0.91506 0.91058 0.87949 0.79441 0.95427 0.92136 0.93952 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 101.05 0.99 1.28 16 2 O -0.28 -4.70 8.37 -19.23 -0.16 -4.86 16 3 C 0.15 2.30 6.70 -38.78 -0.26 2.04 16 4 C -0.22 -2.77 9.03 -39.48 -0.36 -3.12 16 5 C -0.09 -0.96 10.03 -39.51 -0.40 -1.36 16 6 C -0.16 -1.81 9.68 -39.63 -0.38 -2.19 16 7 C -0.04 -0.57 5.91 -104.21 -0.62 -1.19 16 8 C -0.12 -1.19 9.52 36.01 0.34 -0.85 16 9 C -0.04 -0.68 5.88 -104.92 -0.62 -1.30 16 10 C -0.01 -0.27 10.17 -14.68 -0.15 -0.42 16 11 N -0.17 -3.60 9.35 32.15 0.30 -3.30 16 12 N -0.62 -14.14 6.10 -5.88 -0.04 -14.17 16 13 C 0.28 6.93 2.82 -69.08 -0.19 6.74 16 14 H 0.03 0.89 6.80 -51.93 -0.35 0.53 16 15 C -0.16 -3.75 9.19 37.16 0.34 -3.41 16 16 C -0.61 -17.25 9.01 -34.44 -0.31 -17.56 16 17 H 0.06 1.76 8.01 -52.48 -0.42 1.34 16 18 C 0.04 1.07 5.29 -17.82 -0.09 0.97 16 19 N -0.90 -27.28 13.70 55.43 0.76 -26.52 16 20 Si 1.05 25.05 26.29 -169.99 -4.47 20.59 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.27 -6.01 5.76 56.52 0.33 -5.68 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 26 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 27 H 0.12 1.29 6.30 -52.48 -0.33 0.96 16 28 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.07 0.76 6.32 -51.93 -0.33 0.43 16 33 H 0.10 1.64 6.33 -52.49 -0.33 1.31 16 34 H 0.37 7.95 8.56 -182.59 -1.56 6.39 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 1.41 4.88 -51.92 -0.25 1.16 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -31.86 314.85 -7.12 -38.99 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -6.56 Total: 4.90 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -1.70 Total: -20.36 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 1.02 Total: -44.00 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.16 Total: -4.86 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.47 Total: 20.59 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.86 -7.12 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834965409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.047 kcal (2) G-P(sol) polarization free energy of solvation -31.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds