Wall clock time and date at job start Mon Mar 30 2020 06:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35836 * 117.00236 * 2 1 4 4 C 1.38501 * 120.13486 * 359.97438 * 3 2 1 5 5 C 1.38239 * 120.09696 * 180.02562 * 4 3 2 6 6 C 1.38426 * 120.37367 * 359.97438 * 5 4 3 7 7 C 1.37930 * 120.27060 * 359.73833 * 6 5 4 8 8 C 1.50700 * 120.05939 * 180.27529 * 7 6 5 9 9 C 1.39639 * 119.89150 * 0.54085 * 7 6 5 10 10 C 1.47447 * 120.18207 * 179.74407 * 9 7 6 11 11 N 1.29752 * 120.00032 * 179.71889 * 10 9 7 12 12 N 1.40096 * 120.00136 * 179.97438 * 11 10 9 13 13 C 1.46503 * 120.00388 * 180.02562 * 12 11 10 14 14 H 1.08998 * 109.46872 * 29.99961 * 13 12 11 15 15 C 1.52999 * 109.46772 * 270.00516 * 13 12 11 16 16 C 1.50693 * 109.47142 * 150.00283 * 13 12 11 17 17 H 1.08003 * 119.99968 * 5.62744 * 16 13 12 18 18 C 1.37878 * 119.99930 * 185.62515 * 16 13 12 19 19 N 1.31514 * 120.00028 * 197.20150 * 18 16 13 20 20 Si 1.86802 * 119.99709 * 17.48131 * 18 16 13 21 21 H 1.48502 * 109.46690 * 179.72405 * 20 18 16 22 22 H 1.48501 * 109.47068 * 299.72066 * 20 18 16 23 23 H 1.48495 * 109.47337 * 59.72245 * 20 18 16 24 24 H 1.08996 * 109.47112 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47066 * 300.00671 * 1 2 3 26 26 H 1.09001 * 109.47209 * 59.99987 * 1 2 3 27 27 H 1.08005 * 119.95225 * 0.02562 * 4 3 2 28 28 H 1.08000 * 119.81346 * 179.97438 * 5 4 3 29 29 H 1.08003 * 119.86809 * 180.02562 * 6 5 4 30 30 H 1.08997 * 109.47409 * 270.26599 * 8 7 6 31 31 H 1.09007 * 109.46605 * 30.25958 * 8 7 6 32 32 H 1.08992 * 109.47451 * 150.25941 * 8 7 6 33 33 H 1.07997 * 119.99867 * 359.71827 * 10 9 7 34 34 H 0.97006 * 119.99599 * 0.02562 * 12 11 10 35 35 H 1.08996 * 109.47683 * 66.31724 * 15 13 12 36 36 H 1.09008 * 109.46590 * 186.31222 * 15 13 12 37 37 H 1.09000 * 109.47312 * 306.30889 * 15 13 12 38 38 H 0.96998 * 120.00391 * 355.16066 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2942 2.3737 -0.0005 5 6 1.9227 3.6049 -0.0011 6 6 3.3046 3.6854 -0.0005 7 6 4.0680 2.5366 0.0060 8 6 5.5721 2.6298 0.0128 9 6 3.4449 1.2870 0.0006 10 6 4.2547 0.0548 0.0018 11 7 3.6720 -1.1045 0.0024 12 7 4.4415 -2.2752 0.0030 13 6 3.7836 -3.5842 0.0030 14 1 2.8255 -3.5093 -0.5112 15 6 3.5539 -4.0395 1.4455 16 6 4.6578 -4.5858 -0.7067 17 1 5.6462 -4.3018 -1.0366 18 6 4.1957 -5.8646 -0.9349 19 7 5.0417 -6.8256 -1.2355 20 14 2.3672 -6.2306 -0.8246 21 1 2.1315 -7.6673 -1.1172 22 1 1.8814 -5.9178 0.5434 23 1 1.6352 -5.3977 -1.8123 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2156 2.3188 -0.0005 28 1 1.3322 4.5092 -0.0019 29 1 3.7871 4.6517 -0.0005 30 1 5.9393 2.6545 -1.0132 31 1 5.8773 3.5397 0.5298 32 1 5.9875 1.7631 0.5267 33 1 5.3329 0.1173 0.0023 34 1 5.4099 -2.2191 0.0034 35 1 2.8332 -3.3773 1.9252 36 1 3.1680 -5.0589 1.4477 37 1 4.4968 -4.0067 1.9914 38 1 5.9811 -6.6217 -1.3658 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834965409.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:43 Heat of formation + Delta-G solvation = 8.189724 kcal Electronic energy + Delta-G solvation = -19333.476007 eV Core-core repulsion = 16369.469079 eV Total energy + Delta-G solvation = -2964.006927 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.04986 -38.54246 -38.00248 -35.91596 -33.99897 -33.13887 -31.53842 -29.02396 -28.30667 -27.35971 -26.77932 -24.47137 -22.31417 -21.79058 -21.25870 -19.77847 -18.47414 -18.05265 -17.00409 -16.53126 -16.45027 -16.21837 -15.35846 -14.87840 -14.80169 -14.72558 -14.45494 -14.40377 -14.22835 -13.80014 -13.35535 -13.14429 -13.02543 -12.65422 -12.58864 -12.41186 -12.31449 -11.91661 -11.77617 -11.73825 -11.62716 -11.13196 -10.74014 -10.47152 -9.95339 -9.15211 -8.87216 -8.26715 -6.46167 0.10582 0.57214 1.45068 1.52317 1.71840 1.79126 2.19766 2.43307 2.55610 2.98350 3.00586 3.79632 3.95229 4.10154 4.28582 4.32464 4.42978 4.46677 4.47314 4.51537 4.65227 4.76346 4.79079 4.81754 4.86755 4.94369 4.95207 5.12085 5.27161 5.29926 5.47257 5.53724 5.58805 5.71172 5.92202 5.95810 6.01268 6.23410 6.64963 6.69405 7.31565 7.75438 8.56228 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.004952 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.049587 B = 5652.738162 C = 6442.466511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.314 6.314 3 C 0.127 3.873 4 C -0.225 4.225 5 C -0.071 4.071 6 C -0.162 4.162 7 C -0.038 4.038 8 C -0.117 4.117 9 C -0.093 4.093 10 C 0.020 3.980 11 N -0.214 5.214 12 N -0.646 5.646 13 C 0.286 3.714 14 H 0.023 0.977 15 C -0.152 4.152 16 C -0.616 4.616 17 H 0.025 0.975 18 C -0.009 4.009 19 N -0.929 5.929 20 Si 1.081 2.919 21 H -0.282 1.282 22 H -0.240 1.240 23 H -0.270 1.270 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.367 0.633 35 H 0.042 0.958 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 23.156 4.072 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.226 6.226 3 C 0.079 3.921 4 C -0.244 4.244 5 C -0.090 4.090 6 C -0.180 4.180 7 C -0.041 4.041 8 C -0.174 4.174 9 C -0.096 4.096 10 C -0.190 4.190 11 N -0.023 5.023 12 N -0.382 5.382 13 C 0.181 3.819 14 H 0.041 0.959 15 C -0.211 4.211 16 C -0.655 4.655 17 H 0.043 0.957 18 C -0.209 4.209 19 N -0.564 5.564 20 Si 0.902 3.098 21 H -0.207 1.207 22 H -0.165 1.165 23 H -0.195 1.195 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.164 0.836 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.203 0.797 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.080 21.019 3.992 23.651 hybrid contribution 2.768 1.025 -0.204 2.959 sum -7.313 22.045 3.788 23.533 Atomic orbital electron populations 1.23277 0.77836 1.04587 1.02105 1.86410 1.22089 1.26597 1.87460 1.19503 0.91873 0.85373 0.95353 1.21421 1.00896 0.91885 1.10150 1.21370 0.94920 0.97348 0.95404 1.21161 0.93843 0.98210 1.04761 1.20016 0.97316 0.90503 0.96267 1.20903 0.89454 1.03718 1.03297 1.17883 0.89670 0.91831 1.10204 1.23988 0.97457 0.90240 1.07279 1.74306 1.26725 0.94297 1.07019 1.48441 1.04907 1.01088 1.83758 1.18402 0.92878 0.78068 0.92584 0.95874 1.22466 0.99808 1.00397 0.98449 1.22316 1.01860 0.98947 1.42350 0.95706 1.27088 1.09670 0.91598 0.92499 1.70992 1.04523 1.33693 1.47167 0.83615 0.70248 0.76355 0.79574 1.20733 1.16475 1.19490 0.88273 0.91332 0.91595 0.83647 0.82612 0.82804 0.90136 0.88823 0.91983 0.86678 0.79716 0.93911 0.92358 0.94226 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.81 113.37 1.11 1.49 16 2 O -0.31 -10.59 8.37 -91.71 -0.77 -11.36 16 3 C 0.13 3.86 6.70 22.79 0.15 4.01 16 4 C -0.22 -4.99 9.03 22.33 0.20 -4.79 16 5 C -0.07 -1.26 10.03 22.31 0.22 -1.03 16 6 C -0.16 -2.93 9.68 22.24 0.22 -2.71 16 7 C -0.04 -0.89 5.91 -19.60 -0.12 -1.00 16 8 C -0.12 -2.10 9.52 71.24 0.68 -1.43 16 9 C -0.09 -2.87 5.88 -20.06 -0.12 -2.99 16 10 C 0.02 0.72 10.17 87.43 0.89 1.61 16 11 N -0.21 -9.25 9.35 -52.20 -0.49 -9.74 16 12 N -0.65 -30.35 6.10 -172.53 -1.05 -31.40 16 13 C 0.29 14.58 2.82 44.24 0.12 14.71 16 14 H 0.02 1.23 6.80 -2.39 -0.02 1.22 16 15 C -0.15 -7.04 9.19 71.98 0.66 -6.37 16 16 C -0.62 -35.94 9.01 25.60 0.23 -35.71 16 17 H 0.02 1.57 8.01 -2.91 -0.02 1.55 16 18 C -0.01 -0.52 5.29 84.66 0.45 -0.07 16 19 N -0.93 -58.13 13.70 21.45 0.29 -57.84 16 20 Si 1.08 50.51 26.29 68.60 1.80 52.31 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.24 -9.99 5.76 99.48 0.57 -9.42 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H 0.10 2.18 8.14 -2.39 -0.02 2.17 16 25 H 0.07 1.26 7.66 -2.39 -0.02 1.24 16 26 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 27 H 0.15 2.50 6.30 -2.91 -0.02 2.48 16 28 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 29 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 31 H 0.09 1.18 8.09 -2.38 -0.02 1.16 16 32 H 0.06 1.22 6.32 -2.39 -0.02 1.21 16 33 H 0.12 3.70 6.33 -2.91 -0.02 3.69 16 34 H 0.37 16.62 8.56 -213.32 -1.83 14.79 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 2.67 4.88 -2.38 -0.01 2.66 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 Total: -1.00 -72.00 314.85 3.56 -68.44 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.93 Total: 23.87 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 4.70 Total: -34.29 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -1.25 Total: -98.97 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.77 Total: -11.36 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 1.80 Total: 52.31 kcal Total: -72.00 3.56 -68.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834965409.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.629 kcal (2) G-P(sol) polarization free energy of solvation -72.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds