Wall clock time and date at job start Mon Mar 30 2020 06:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35842 * 116.99746 * 2 1 4 4 C 1.38496 * 120.14145 * 359.97330 * 3 2 1 5 5 C 1.38234 * 120.10351 * 180.02562 * 4 3 2 6 6 C 1.38425 * 120.36909 * 359.97438 * 5 4 3 7 7 C 1.37929 * 120.27119 * 359.73316 * 6 5 4 8 8 C 1.50700 * 120.05576 * 180.28149 * 7 6 5 9 9 C 1.39637 * 119.89538 * 0.53774 * 7 6 5 10 10 C 1.47435 * 120.18247 * 179.74284 * 9 7 6 11 11 N 1.29756 * 119.99833 * 179.72720 * 10 9 7 12 12 N 1.40104 * 120.00151 * 180.02562 * 11 10 9 13 13 C 1.46497 * 120.00312 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.46733 * 330.00215 * 13 12 11 15 15 C 1.53000 * 109.47145 * 89.99780 * 13 12 11 16 16 C 1.50694 * 109.47115 * 209.99853 * 13 12 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 H 1.09003 * 109.47349 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47016 * 300.00307 * 1 2 3 26 26 H 1.08997 * 109.47330 * 60.00133 * 1 2 3 27 27 H 1.08007 * 119.94804 * 0.02706 * 4 3 2 28 28 H 1.08000 * 119.81639 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.86294 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.47161 * 270.26260 * 8 7 6 31 31 H 1.09004 * 109.47082 * 30.25896 * 8 7 6 32 32 H 1.08993 * 109.47570 * 150.25803 * 8 7 6 33 33 H 1.07994 * 120.00292 * 359.72357 * 10 9 7 34 34 H 0.97006 * 119.99719 * 359.97438 * 12 11 10 35 35 H 1.08997 * 109.47359 * 180.02562 * 15 13 12 36 36 H 1.09007 * 109.47356 * 300.00099 * 15 13 12 37 37 H 1.09000 * 109.47156 * 59.99824 * 15 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2942 2.3737 -0.0006 5 6 1.9225 3.6050 -0.0011 6 6 3.3044 3.6855 -0.0005 7 6 4.0678 2.5368 0.0061 8 6 5.5719 2.6301 0.0131 9 6 3.4448 1.2871 0.0009 10 6 4.2547 0.0551 0.0022 11 7 3.6720 -1.1043 0.0028 12 7 4.4415 -2.2751 0.0046 13 6 3.7837 -3.5841 0.0057 14 1 2.8251 -3.5084 0.5190 15 6 3.5555 -4.0414 -1.4363 16 6 4.6572 -4.5845 0.7178 17 1 5.6075 -4.2764 1.1280 18 6 4.2436 -5.8938 0.8446 19 7 3.0866 -6.2692 0.3445 20 14 5.3267 -7.1341 1.7265 21 1 4.6599 -8.4610 1.7278 22 1 6.6326 -7.2366 1.0271 23 1 5.5483 -6.6907 3.1263 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.2155 2.3188 -0.0006 28 1 1.3320 4.5093 -0.0011 29 1 3.7868 4.6518 -0.0005 30 1 5.9392 2.6546 -1.0129 31 1 5.8771 3.5399 0.5301 32 1 5.9874 1.7634 0.5271 33 1 5.3328 0.1176 0.0027 34 1 5.4100 -2.2189 0.0051 35 1 3.0657 -5.0151 -1.4355 36 1 2.9237 -3.3177 -1.9514 37 1 4.5141 -4.1170 -1.9496 38 1 2.7959 -7.1904 0.4334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834965410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:45 Heat of formation + Delta-G solvation = 28.711124 kcal Electronic energy + Delta-G solvation = -19247.773285 eV Core-core repulsion = 16284.656232 eV Total energy + Delta-G solvation = -2963.117053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91640 -37.37267 -36.22629 -34.05605 -32.49985 -31.40657 -29.90182 -27.31164 -27.18351 -26.19097 -25.17436 -23.16071 -21.06643 -20.24335 -19.83836 -17.44335 -16.94152 -16.28394 -15.54818 -15.39132 -14.98229 -14.85970 -14.00747 -13.63333 -13.61802 -13.47554 -12.94735 -12.49880 -12.37461 -12.12893 -12.00742 -11.64250 -11.40685 -11.33392 -11.02008 -10.84013 -10.73005 -10.71674 -10.49271 -10.19491 -10.16672 -9.25112 -8.96103 -8.66866 -8.44194 -8.00830 -6.61531 -6.09874 -4.17894 1.26711 1.63457 3.18127 3.27585 3.31973 3.33911 3.61629 3.93701 4.14171 4.40171 4.90284 4.97041 5.11873 5.22163 5.31588 5.36986 5.37995 5.41105 5.60184 5.70801 5.75898 5.78120 5.93334 6.14828 6.23097 6.47510 6.61326 6.65544 6.83019 6.95407 7.06586 7.11742 7.22305 7.62565 7.77002 7.85635 7.92274 8.21791 8.37692 8.90501 9.46419 9.49334 10.95820 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028102 B = 0.004458 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.119070 B = 6278.865700 C = 6952.291341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.273 6.273 3 C 0.145 3.855 4 C -0.219 4.219 5 C -0.088 4.088 6 C -0.161 4.161 7 C -0.047 4.047 8 C -0.114 4.114 9 C -0.040 4.040 10 C -0.024 4.024 11 N -0.163 5.163 12 N -0.626 5.626 13 C 0.299 3.701 14 H 0.042 0.958 15 C -0.149 4.149 16 C -0.530 4.530 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.886 5.886 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.276 1.276 23 H -0.277 1.277 24 H 0.100 0.900 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.365 0.635 35 H 0.089 0.911 36 H 0.012 0.988 37 H 0.024 0.976 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.761 17.218 -1.327 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.184 6.184 3 C 0.096 3.904 4 C -0.238 4.238 5 C -0.108 4.108 6 C -0.179 4.179 7 C -0.050 4.050 8 C -0.171 4.171 9 C -0.042 4.042 10 C -0.231 4.231 11 N 0.023 4.977 12 N -0.362 5.362 13 C 0.197 3.803 14 H 0.060 0.940 15 C -0.208 4.208 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.524 5.524 20 Si 0.730 3.270 21 H -0.211 1.211 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.201 0.799 35 H 0.107 0.893 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.777 16.119 -1.342 16.412 hybrid contribution 1.442 -0.260 0.424 1.526 sum -1.335 15.860 -0.918 15.942 Atomic orbital electron populations 1.23062 0.79775 1.03984 1.00299 1.86497 1.19763 1.25088 1.87032 1.19180 0.91619 0.84738 0.94882 1.21119 0.99780 0.92357 1.10508 1.20825 0.94492 0.96625 0.98829 1.20703 0.93578 0.97450 1.06157 1.19637 0.95851 0.91103 0.98366 1.20804 0.91143 1.02730 1.02398 1.17642 0.89136 0.91800 1.05665 1.23323 0.96084 0.90148 1.13554 1.74245 1.27008 0.94193 1.02273 1.49149 1.05157 1.01518 1.80399 1.18478 0.93858 0.75128 0.92840 0.94015 1.22190 0.98711 1.02082 0.97843 1.21224 1.05155 0.93854 1.36673 0.92337 1.24852 0.95261 0.98052 0.95442 1.69888 1.19746 1.17997 1.44795 0.86499 0.80361 0.80085 0.80099 1.21100 1.20203 1.20210 0.88195 0.93266 0.93308 0.85811 0.86375 0.86264 0.91055 0.91598 0.91028 0.88106 0.79950 0.89286 0.96841 0.95686 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 101.05 0.99 1.31 16 2 O -0.27 -4.93 8.37 -19.24 -0.16 -5.09 16 3 C 0.14 2.40 6.70 -38.78 -0.26 2.14 16 4 C -0.22 -2.92 9.03 -39.49 -0.36 -3.28 16 5 C -0.09 -1.03 10.03 -39.51 -0.40 -1.43 16 6 C -0.16 -1.89 9.68 -39.63 -0.38 -2.28 16 7 C -0.05 -0.63 5.91 -104.21 -0.62 -1.24 16 8 C -0.11 -1.22 9.52 36.01 0.34 -0.88 16 9 C -0.04 -0.66 5.88 -104.92 -0.62 -1.27 16 10 C -0.02 -0.44 10.17 -14.68 -0.15 -0.59 16 11 N -0.16 -3.60 9.35 32.15 0.30 -3.30 16 12 N -0.63 -14.55 6.10 -5.88 -0.04 -14.58 16 13 C 0.30 7.87 3.23 -69.09 -0.22 7.65 16 14 H 0.04 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.15 -3.78 9.29 37.16 0.35 -3.44 16 16 C -0.53 -14.53 8.74 -34.44 -0.30 -14.83 16 17 H 0.06 1.57 7.79 -52.49 -0.41 1.16 16 18 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 19 N -0.89 -25.00 11.32 55.43 0.63 -24.38 16 20 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 26 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 27 H 0.12 1.38 6.30 -52.48 -0.33 1.05 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.79 6.32 -51.93 -0.33 0.46 16 33 H 0.10 1.66 6.33 -52.49 -0.33 1.32 16 34 H 0.36 7.84 8.58 -182.59 -1.57 6.27 16 35 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -30.49 319.23 -7.79 -38.27 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.59 Total: 4.67 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -1.72 Total: -16.41 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.89 Total: -42.25 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.16 Total: -5.09 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.49 -7.79 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834965410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.985 kcal (2) G-P(sol) polarization free energy of solvation -30.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds