Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35838 * 117.00063 * 2 1 4 4 C 1.38497 * 120.14096 * 0.02562 * 3 2 1 5 5 C 1.38234 * 120.10436 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.81804 * 179.97438 * 5 4 3 7 7 C 1.38428 * 120.37031 * 0.02562 * 5 4 3 8 8 C 1.37935 * 120.26964 * 359.74048 * 7 5 4 9 9 C 1.39638 * 119.89337 * 0.50967 * 8 7 5 10 10 C 1.47436 * 120.18187 * 179.76443 * 9 8 7 11 11 N 1.29756 * 120.00081 * 179.72146 * 10 9 8 12 12 N 1.40105 * 120.00107 * 180.02562 * 11 10 9 13 13 C 1.46497 * 120.00129 * 180.02562 * 12 11 10 14 14 H 1.09007 * 109.47078 * 29.99710 * 13 12 11 15 15 C 1.53000 * 109.47021 * 270.00290 * 13 12 11 16 16 C 1.50694 * 109.47115 * 150.00071 * 13 12 11 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09002 * 109.47178 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46727 * 299.99740 * 1 2 3 26 26 H 1.08999 * 109.47608 * 59.99699 * 1 2 3 27 27 H 1.08006 * 119.94619 * 359.96210 * 4 3 2 28 28 H 1.09002 * 109.47012 * 89.99608 * 6 5 4 29 29 H 1.08996 * 109.47168 * 210.00324 * 6 5 4 30 30 H 1.09003 * 109.46524 * 329.99967 * 6 5 4 31 31 H 1.07996 * 119.86650 * 179.97438 * 7 5 4 32 32 H 1.07997 * 120.05556 * 180.25638 * 8 7 5 33 33 H 1.08002 * 120.00178 * 359.73002 * 10 9 8 34 34 H 0.96998 * 119.99525 * 0.02562 * 12 11 10 35 35 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 36 36 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 37 37 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.2943 2.3737 0.0005 5 6 1.9227 3.6050 0.0011 6 6 1.0987 4.8668 0.0011 7 6 3.3046 3.6855 0.0005 8 6 4.0680 2.5366 0.0049 9 6 3.4449 1.2870 -0.0010 10 6 4.2547 0.0549 -0.0016 11 7 3.6720 -1.1044 -0.0016 12 7 4.4415 -2.2753 -0.0017 13 6 3.7837 -3.5842 -0.0022 14 1 2.8254 -3.5090 -0.5163 15 6 3.5542 -4.0402 1.4401 16 6 4.6577 -4.5854 -0.7126 17 1 5.6080 -4.2774 -1.1231 18 6 4.2437 -5.8945 -0.8395 19 7 3.0862 -6.2694 -0.3401 20 14 5.3268 -7.1353 -1.7207 21 1 4.9885 -7.1490 -3.1666 22 1 6.7527 -6.7575 -1.5494 23 1 5.1001 -8.4860 -1.1465 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2156 2.3188 0.0003 28 1 0.8996 5.1707 1.0288 29 1 1.6454 5.6577 -0.5124 30 1 0.1551 4.6844 -0.5132 31 1 3.7871 4.6517 0.0005 32 1 5.1459 2.6034 0.0086 33 1 5.3329 0.1174 -0.0020 34 1 5.4099 -2.2191 -0.0014 35 1 2.9220 -3.3160 1.9539 36 1 3.0643 -5.0139 1.4398 37 1 4.5124 -4.1154 1.9542 38 1 2.7948 -7.1903 -0.4297 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834965751.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = 7.765180 kcal Electronic energy + Delta-G solvation = -19057.732431 eV Core-core repulsion = 16093.707094 eV Total energy + Delta-G solvation = -2964.025337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01634 -38.39800 -37.94870 -35.95199 -34.03553 -32.56236 -30.96803 -29.53524 -28.35967 -27.40513 -26.98575 -23.39896 -23.05897 -22.13573 -21.33320 -18.91482 -18.25570 -17.67409 -17.07636 -16.53641 -16.51226 -16.22663 -15.38407 -15.11246 -14.59852 -14.48974 -14.42062 -14.30825 -13.95123 -13.48959 -13.09489 -13.01763 -12.92644 -12.80990 -12.64813 -12.38940 -12.21774 -12.16879 -12.07144 -11.78180 -11.68146 -11.12445 -10.69726 -10.58410 -9.83485 -9.20901 -8.24950 -8.11963 -6.34830 0.13470 0.61057 1.41896 1.42818 1.53574 1.83426 2.23596 2.48817 2.59298 3.01967 3.10886 3.82104 3.93255 4.14801 4.26428 4.39857 4.40016 4.41448 4.66844 4.72497 4.74910 4.78085 4.88479 4.92219 4.97757 5.01607 5.13335 5.22439 5.33774 5.44411 5.51549 5.62345 5.72689 5.81584 5.89952 6.01857 6.21283 6.44492 6.66981 6.86845 7.36793 7.89161 8.87663 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036362 B = 0.003963 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.859649 B = 7063.270035 C = 7500.457776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.314 6.314 3 C 0.126 3.874 4 C -0.222 4.222 5 C -0.050 4.050 6 C -0.112 4.112 7 C -0.160 4.160 8 C -0.062 4.062 9 C -0.093 4.093 10 C 0.015 3.985 11 N -0.219 5.219 12 N -0.647 5.647 13 C 0.312 3.688 14 H -0.003 1.003 15 C -0.133 4.133 16 C -0.549 4.549 17 H 0.060 0.940 18 C 0.018 3.982 19 N -0.915 5.915 20 Si 0.972 3.028 21 H -0.276 1.276 22 H -0.266 1.266 23 H -0.278 1.278 24 H 0.093 0.907 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.119 0.881 34 H 0.369 0.631 35 H 0.013 0.987 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.838 20.981 1.059 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.226 6.226 3 C 0.077 3.923 4 C -0.240 4.240 5 C -0.052 4.052 6 C -0.168 4.168 7 C -0.178 4.178 8 C -0.083 4.083 9 C -0.096 4.096 10 C -0.194 4.194 11 N -0.029 5.029 12 N -0.384 5.384 13 C 0.208 3.792 14 H 0.015 0.985 15 C -0.192 4.192 16 C -0.588 4.588 17 H 0.078 0.922 18 C -0.182 4.182 19 N -0.553 5.553 20 Si 0.796 3.204 21 H -0.202 1.202 22 H -0.190 1.190 23 H -0.203 1.203 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.159 0.841 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.136 0.864 34 H 0.206 0.794 35 H 0.032 0.968 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.862 19.911 1.083 20.311 hybrid contribution 1.272 -0.829 -0.336 1.555 sum -2.589 19.082 0.747 19.272 Atomic orbital electron populations 1.23225 0.78090 1.04246 1.02024 1.86444 1.21909 1.26734 1.87482 1.19550 0.92160 0.85107 0.95461 1.21250 1.00565 0.91447 1.10785 1.20173 0.94669 0.94961 0.95379 1.20866 0.99252 0.93344 1.03341 1.21154 0.93014 0.98948 1.04720 1.21262 1.01077 0.89443 0.96474 1.18101 0.89539 0.92510 1.09447 1.23978 0.97433 0.90222 1.07813 1.74337 1.27320 0.94534 1.06690 1.48626 1.04992 1.01216 1.83531 1.18028 0.91949 0.76913 0.92340 0.98524 1.21992 0.98566 1.00853 0.97820 1.21548 1.05404 0.94653 1.37208 0.92193 1.25739 0.96581 0.99892 0.96012 1.70027 1.21205 1.18508 1.45549 0.85354 0.78952 0.77720 0.78340 1.20188 1.19045 1.20329 0.88833 0.91401 0.91533 0.84096 0.89944 0.89751 0.91026 0.82743 0.82965 0.86386 0.79449 0.96758 0.91232 0.95214 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.31 -11.74 8.37 -91.73 -0.77 -12.50 16 3 C 0.13 4.11 6.70 22.79 0.15 4.26 16 4 C -0.22 -5.50 8.68 22.33 0.19 -5.31 16 5 C -0.05 -1.01 5.88 -19.82 -0.12 -1.12 16 6 C -0.11 -1.37 10.00 71.24 0.71 -0.65 16 7 C -0.16 -3.08 9.67 22.24 0.22 -2.86 16 8 C -0.06 -1.45 9.79 22.54 0.22 -1.23 16 9 C -0.09 -2.99 5.88 -20.06 -0.12 -3.11 16 10 C 0.02 0.56 10.75 87.42 0.94 1.50 16 11 N -0.22 -10.06 9.35 -52.20 -0.49 -10.55 16 12 N -0.65 -31.62 6.10 -172.53 -1.05 -32.67 16 13 C 0.31 17.34 3.23 44.24 0.14 17.49 16 14 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 15 C -0.13 -7.09 9.29 71.98 0.67 -6.42 16 16 C -0.55 -31.22 8.74 25.60 0.22 -31.00 16 17 H 0.06 3.31 7.79 -2.91 -0.02 3.28 16 18 C 0.02 1.00 5.30 84.66 0.45 1.45 16 19 N -0.91 -53.25 11.32 21.45 0.24 -53.00 16 20 Si 0.97 43.67 29.54 68.60 2.03 45.69 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 24 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.07 1.49 7.66 -2.39 -0.02 1.47 16 26 H 0.07 1.48 7.66 -2.39 -0.02 1.47 16 27 H 0.14 2.88 6.30 -2.91 -0.02 2.86 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 30 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 31 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.12 3.79 8.02 -2.91 -0.02 3.76 16 34 H 0.37 16.57 8.58 -213.32 -1.83 14.74 16 35 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 37 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.27 14.58 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -69.39 323.11 3.98 -65.41 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.78 Total: 23.02 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.80 Total: -25.39 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -1.30 Total: -96.22 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.77 Total: -12.50 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -69.39 3.98 -65.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834965751.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.173 kcal (2) G-P(sol) polarization free energy of solvation -69.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds