Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38281 * 119.92579 * 269.73113 * 3 2 1 5 5 C 1.38105 * 120.07271 * 179.72683 * 4 3 2 6 6 C 1.38906 * 119.92209 * 0.54454 * 5 4 3 7 7 N 1.39682 * 120.07325 * 179.70887 * 6 5 4 8 8 N 1.40102 * 119.99793 * 0.02562 * 7 6 5 9 9 C 1.34777 * 119.99997 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00032 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.52992 * 109.47009 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47278 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00171 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00316 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00096 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00016 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47056 * 90.00027 * 17 15 13 19 19 H 1.48501 * 109.47167 * 210.00053 * 17 15 13 20 20 H 1.48499 * 109.47013 * 329.99942 * 17 15 13 21 21 C 1.38903 * 119.85573 * 359.72335 * 6 5 4 22 22 C 1.38112 * 119.92342 * 0.02562 * 21 6 5 23 23 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 28 28 H 1.08006 * 119.96269 * 359.97332 * 4 3 2 29 29 H 1.08001 * 120.03788 * 180.27368 * 5 4 3 30 30 H 0.96998 * 120.00261 * 180.02562 * 7 6 5 31 31 H 0.97003 * 120.00088 * 0.02562 * 8 7 6 32 32 H 1.08997 * 109.46752 * 300.00339 * 11 9 8 33 33 H 1.09000 * 109.46770 * 60.00256 * 11 9 8 34 34 H 1.09001 * 109.47736 * 300.00406 * 12 11 9 35 35 H 1.09000 * 109.47295 * 60.00394 * 12 11 9 36 36 H 0.97003 * 119.99973 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.04338 * 179.97438 * 21 6 5 38 38 H 1.08000 * 119.96130 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2676 2.0694 -1.1984 5 6 2.7226 3.3734 -1.2020 6 6 2.9547 4.0295 0.0001 7 7 3.4206 5.3463 0.0002 8 7 3.6540 6.0069 -1.2132 9 6 4.1031 7.2776 -1.2131 10 8 4.3057 7.8491 -0.1628 11 6 4.3546 7.9879 -2.5182 12 6 4.8564 9.4059 -2.2386 13 6 5.1073 10.1165 -3.5436 14 1 4.9274 9.6075 -4.4790 15 6 5.5677 11.4161 -3.5436 16 7 5.7862 12.0364 -4.6825 17 14 5.8797 12.2964 -1.9259 18 1 7.2821 12.0622 -1.4974 19 1 5.6531 13.7533 -2.1033 20 1 4.9520 11.7736 -0.8909 21 6 2.7226 3.3733 1.2021 22 6 2.2626 2.0710 1.1985 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.0915 1.5569 -2.1327 29 1 2.9019 3.8808 -2.1384 30 1 3.5827 5.8035 0.8402 31 1 3.4915 5.5499 -2.0532 32 1 5.1061 7.4430 -3.0895 33 1 3.4279 8.0362 -3.0900 34 1 4.1053 9.9511 -1.6671 35 1 5.7832 9.3573 -1.6670 36 1 6.1105 12.9506 -4.6825 37 1 2.9024 3.8805 2.1386 38 1 2.0824 1.5601 2.1328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836929532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = 5.833314 kcal Electronic energy + Delta-G solvation = -18335.548535 eV Core-core repulsion = 15371.439426 eV Total energy + Delta-G solvation = -2964.109109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.07721 -39.11346 -36.29921 -33.82824 -33.58847 -31.75307 -31.15469 -30.66761 -27.87082 -25.93942 -23.64365 -23.21067 -21.48971 -20.89832 -20.04922 -18.18490 -17.51747 -16.74074 -15.74997 -15.66923 -15.30941 -15.18668 -14.21870 -14.04049 -13.91564 -13.78039 -13.52026 -13.41299 -13.26427 -12.71689 -12.61515 -12.35491 -11.51035 -11.47236 -11.28405 -11.17095 -11.01345 -10.98316 -10.28013 -10.14170 -9.86675 -9.53231 -9.25360 -9.23399 -9.10570 -8.55644 -7.21864 -6.07651 -4.07218 1.26342 1.38475 2.04628 2.90908 3.34582 3.41487 3.51422 3.68072 4.26464 4.46499 4.60683 4.64369 4.82183 4.92645 5.13442 5.16126 5.22122 5.27576 5.31958 5.40806 5.62929 5.66164 5.72633 5.87169 5.91882 5.95240 5.95483 6.15236 6.25998 6.49504 6.55002 6.66135 6.96930 7.25940 7.33909 7.42468 7.71330 7.75757 8.43712 8.54544 8.94591 9.54726 11.04951 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.054163 B = 0.002965 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.831287 B = 9442.618916 C = 9846.208520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.148 4.148 4 C -0.062 4.062 5 C -0.201 4.201 6 C 0.220 3.780 7 N -0.545 5.545 8 N -0.536 5.536 9 C 0.509 3.491 10 O -0.540 6.540 11 C -0.111 4.111 12 C 0.003 3.997 13 C -0.527 4.527 14 H 0.074 0.926 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.192 4.192 22 C -0.062 4.062 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.432 0.568 31 H 0.419 0.581 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.025 0.975 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 -23.901 9.068 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.151 4.151 4 C -0.081 4.081 5 C -0.224 4.224 6 C 0.116 3.884 7 N -0.269 5.269 8 N -0.284 5.284 9 C 0.298 3.702 10 O -0.415 6.415 11 C -0.152 4.152 12 C -0.035 4.035 13 C -0.565 4.565 14 H 0.092 0.908 15 C -0.132 4.132 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.216 4.216 22 C -0.081 4.081 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.274 0.726 31 H 0.261 0.739 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.141 0.859 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.685 -23.162 9.569 26.523 hybrid contribution 0.224 0.565 0.641 0.884 sum -8.461 -22.597 10.210 26.200 Atomic orbital electron populations 1.21773 0.95241 1.01291 1.02168 1.20398 0.95765 0.92832 1.02325 1.19619 1.05494 0.96923 0.93024 1.20724 0.96341 0.93474 0.97520 1.20443 1.09588 0.96418 0.95959 1.17796 0.93265 0.82642 0.94721 1.43460 1.73432 1.09718 1.00280 1.45377 1.69960 1.12954 1.00120 1.21958 0.75523 0.78784 0.93934 1.90673 1.51465 1.65431 1.33918 1.21670 1.03315 0.98981 0.91277 1.19390 0.96808 0.89524 0.97823 1.21064 1.45013 0.98223 0.92191 0.90791 1.24965 0.94640 0.97310 0.96270 1.69907 1.45950 1.12643 1.25504 0.86793 0.79398 0.78617 0.84721 1.20211 1.21379 1.18574 1.20426 1.09114 0.96193 0.95842 1.20693 0.96571 0.93366 0.97482 0.92684 0.92793 0.92640 0.91526 0.91487 0.86133 0.86462 0.72560 0.73903 0.89031 0.89006 0.95652 0.96097 0.92632 0.85931 0.86095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.08 -0.52 6.06 -27.88 -0.17 -0.69 16 3 C -0.15 -1.33 5.14 -104.59 -0.54 -1.87 16 4 C -0.06 -0.58 9.69 -39.61 -0.38 -0.96 16 5 C -0.20 -2.12 9.48 -39.38 -0.37 -2.49 16 6 C 0.22 2.55 6.72 -83.79 -0.56 1.99 16 7 N -0.54 -7.14 6.45 32.41 0.21 -6.93 16 8 N -0.54 -7.34 6.22 31.22 0.19 -7.15 16 9 C 0.51 8.97 7.95 -10.98 -0.09 8.89 16 10 O -0.54 -11.57 15.82 5.56 0.09 -11.48 16 11 C -0.11 -2.04 5.64 -27.89 -0.16 -2.20 16 12 C 0.00 0.06 3.33 -27.89 -0.09 -0.03 16 13 C -0.53 -14.75 9.66 -34.44 -0.33 -15.09 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 17 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 21 C -0.19 -1.97 9.90 -39.38 -0.39 -2.36 16 22 C -0.06 -0.57 9.69 -39.61 -0.38 -0.95 16 23 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.12 1.08 6.20 -52.49 -0.33 0.76 16 30 H 0.43 5.80 8.01 -182.60 -1.46 4.34 16 31 H 0.42 4.54 6.61 -182.59 -1.21 3.33 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 35 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -33.20 322.14 -9.31 -42.51 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.57 Total: 1.80 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: -3.20 Total: -14.40 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 1.18 Total: -40.91 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.20 -9.31 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836929532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.346 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds