Wall clock time and date at job start Mon Mar 30 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38281 * 119.92579 * 269.73113 * 3 2 1 5 5 C 1.38105 * 120.07271 * 179.72683 * 4 3 2 6 6 C 1.38906 * 119.92209 * 0.54454 * 5 4 3 7 7 N 1.39682 * 120.07325 * 179.70887 * 6 5 4 8 8 N 1.40102 * 119.99793 * 0.02562 * 7 6 5 9 9 C 1.34777 * 119.99997 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00032 * 0.02562 * 9 8 7 11 11 C 1.50702 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.52992 * 109.47009 * 180.02562 * 11 9 8 13 13 C 1.50697 * 109.47278 * 180.02562 * 12 11 9 14 14 H 1.08000 * 120.00171 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00316 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00096 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 120.00016 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.47056 * 90.00027 * 17 15 13 19 19 H 1.48501 * 109.47167 * 210.00053 * 17 15 13 20 20 H 1.48499 * 109.47013 * 329.99942 * 17 15 13 21 21 C 1.38903 * 119.85573 * 359.72335 * 6 5 4 22 22 C 1.38112 * 119.92342 * 0.02562 * 21 6 5 23 23 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 28 28 H 1.08006 * 119.96269 * 359.97332 * 4 3 2 29 29 H 1.08001 * 120.03788 * 180.27368 * 5 4 3 30 30 H 0.96998 * 120.00261 * 180.02562 * 7 6 5 31 31 H 0.97003 * 120.00088 * 0.02562 * 8 7 6 32 32 H 1.08997 * 109.46752 * 300.00339 * 11 9 8 33 33 H 1.09000 * 109.46770 * 60.00256 * 11 9 8 34 34 H 1.09001 * 109.47736 * 300.00406 * 12 11 9 35 35 H 1.09000 * 109.47295 * 60.00394 * 12 11 9 36 36 H 0.97003 * 119.99973 * 180.02562 * 16 15 13 37 37 H 1.08003 * 120.04338 * 179.97438 * 21 6 5 38 38 H 1.08000 * 119.96130 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2676 2.0694 -1.1984 5 6 2.7226 3.3734 -1.2020 6 6 2.9547 4.0295 0.0001 7 7 3.4206 5.3463 0.0002 8 7 3.6540 6.0069 -1.2132 9 6 4.1031 7.2776 -1.2131 10 8 4.3057 7.8491 -0.1628 11 6 4.3546 7.9879 -2.5182 12 6 4.8564 9.4059 -2.2386 13 6 5.1073 10.1165 -3.5436 14 1 4.9274 9.6075 -4.4790 15 6 5.5677 11.4161 -3.5436 16 7 5.7862 12.0364 -4.6825 17 14 5.8797 12.2964 -1.9259 18 1 7.2821 12.0622 -1.4974 19 1 5.6531 13.7533 -2.1033 20 1 4.9520 11.7736 -0.8909 21 6 2.7226 3.3733 1.2021 22 6 2.2626 2.0710 1.1985 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.0915 1.5569 -2.1327 29 1 2.9019 3.8808 -2.1384 30 1 3.5827 5.8035 0.8402 31 1 3.4915 5.5499 -2.0532 32 1 5.1061 7.4430 -3.0895 33 1 3.4279 8.0362 -3.0900 34 1 4.1053 9.9511 -1.6671 35 1 5.7832 9.3573 -1.6670 36 1 6.1105 12.9506 -4.6825 37 1 2.9024 3.8805 2.1386 38 1 2.0824 1.5601 2.1328 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836929532.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:54 Heat of formation + Delta-G solvation = -14.806675 kcal Electronic energy + Delta-G solvation = -18336.443553 eV Core-core repulsion = 15371.439426 eV Total energy + Delta-G solvation = -2965.004126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15547 -40.15985 -37.32153 -35.56961 -34.66647 -33.45218 -32.12980 -31.65433 -28.89049 -27.55494 -24.32682 -24.23508 -22.99861 -21.66300 -21.43910 -19.46810 -18.94335 -18.29922 -16.92423 -16.72021 -16.44645 -16.22259 -15.91355 -15.21550 -14.93137 -14.79015 -14.65827 -14.37006 -14.31306 -14.08053 -13.75666 -13.43495 -13.06663 -12.91644 -12.18746 -12.17441 -12.08601 -11.99442 -11.78844 -11.77025 -11.58191 -11.41572 -11.05838 -10.78433 -10.19820 -9.85184 -8.31693 -8.15866 -6.34686 0.51627 0.59736 0.96514 1.33228 1.35648 1.49744 1.55271 2.34507 2.92355 3.04161 3.17838 3.82645 3.93361 4.02507 4.14596 4.33242 4.35498 4.45293 4.54297 4.63160 4.68724 4.72684 4.90455 4.96766 5.09886 5.17202 5.21544 5.32660 5.38625 5.41895 5.44896 5.51802 5.58890 5.70792 5.84839 6.08443 6.22622 6.33676 6.70391 6.72575 7.30306 7.30995 8.83749 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.054163 B = 0.002965 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.831287 B = 9442.618916 C = 9846.208520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.075 4.075 3 C -0.146 4.146 4 C -0.070 4.070 5 C -0.209 4.209 6 C 0.197 3.803 7 N -0.553 5.553 8 N -0.515 5.515 9 C 0.514 3.486 10 O -0.584 6.584 11 C -0.105 4.105 12 C 0.005 3.995 13 C -0.528 4.528 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.943 5.943 17 Si 0.938 3.062 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.261 1.261 21 C -0.197 4.197 22 C -0.069 4.069 23 H 0.050 0.950 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.428 0.572 31 H 0.434 0.566 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.012 0.988 35 H 0.011 0.989 36 H 0.267 0.733 37 H 0.131 0.869 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 -26.064 9.941 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.148 4.148 4 C -0.089 4.089 5 C -0.232 4.232 6 C 0.095 3.905 7 N -0.279 5.279 8 N -0.262 5.262 9 C 0.302 3.698 10 O -0.463 6.463 11 C -0.146 4.146 12 C -0.033 4.033 13 C -0.566 4.566 14 H 0.072 0.928 15 C -0.184 4.184 16 N -0.583 5.583 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.185 1.185 21 C -0.220 4.220 22 C -0.087 4.087 23 H 0.069 0.931 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.270 0.730 31 H 0.278 0.722 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.030 0.970 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.402 -25.409 10.413 29.025 hybrid contribution 0.364 1.037 0.332 1.148 sum -9.038 -24.372 10.746 28.127 Atomic orbital electron populations 1.21758 0.94851 1.02029 1.01713 1.20454 0.95996 0.91534 1.03292 1.19980 1.04109 0.97902 0.92845 1.21012 0.96031 0.93186 0.98652 1.20681 1.09461 0.97044 0.96043 1.18020 0.94643 0.82135 0.95711 1.43517 1.74696 1.10295 0.99437 1.44949 1.67945 1.11949 1.01397 1.21542 0.75733 0.79745 0.92788 1.90656 1.53844 1.66745 1.35025 1.21456 1.04701 0.96090 0.92309 1.19235 0.96131 0.92636 0.95313 1.21402 1.43783 0.98319 0.93107 0.92802 1.25792 0.94867 0.98453 0.99333 1.70019 1.47514 1.13260 1.27530 0.85840 0.79448 0.77756 0.80725 1.19446 1.20510 1.18527 1.20667 1.08734 0.96723 0.95916 1.20998 0.96092 0.93012 0.98628 0.93070 0.91512 0.93176 0.90521 0.90636 0.84270 0.85562 0.72991 0.72152 0.87052 0.87080 0.96983 0.97090 0.92382 0.85078 0.84025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.89 71.98 0.71 -0.81 16 2 C -0.08 -0.83 6.06 29.85 0.18 -0.65 16 3 C -0.15 -2.27 5.14 -19.84 -0.10 -2.38 16 4 C -0.07 -1.16 9.69 22.25 0.22 -0.94 16 5 C -0.21 -4.04 9.48 22.40 0.21 -3.83 16 6 C 0.20 4.31 6.72 38.21 0.26 4.57 16 7 N -0.55 -14.01 6.45 -51.37 -0.33 -14.34 16 8 N -0.51 -13.42 6.22 -173.53 -1.08 -14.50 16 9 C 0.51 17.63 7.95 87.66 0.70 18.33 16 10 O -0.58 -24.94 15.82 -3.04 -0.05 -24.99 16 11 C -0.10 -3.72 5.64 29.85 0.17 -3.55 16 12 C 0.01 0.24 3.33 29.84 0.10 0.34 16 13 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 14 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 15 C 0.01 0.78 5.47 84.65 0.46 1.25 16 16 N -0.94 -58.44 13.96 21.45 0.30 -58.14 16 17 Si 0.94 46.25 27.47 68.60 1.88 48.13 16 18 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.26 -12.76 6.54 99.48 0.65 -12.11 16 21 C -0.20 -3.76 9.90 22.40 0.22 -3.54 16 22 C -0.07 -1.11 9.69 22.25 0.22 -0.89 16 23 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 27 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 28 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 29 H 0.13 2.08 6.20 -2.91 -0.02 2.07 16 30 H 0.43 11.39 8.01 -213.32 -1.71 9.68 16 31 H 0.43 8.55 6.61 -213.32 -1.41 7.14 16 32 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 33 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 35 H 0.01 0.54 7.53 -2.39 -0.02 0.52 16 36 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -71.23 322.14 2.21 -69.03 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -2.11 Total: 16.42 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.59 Total: -21.61 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -1.11 Total: -86.98 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal Total: -71.23 2.21 -69.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836929532.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.221 kcal (2) G-P(sol) polarization free energy of solvation -71.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds