Wall clock time and date at job start Mon Mar 30 2020 06:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 O 1.45202 * 109.46867 * 240.00551 * 2 1 3 5 5 C 1.34228 * 117.00156 * 89.99837 * 4 2 1 6 6 O 1.20826 * 120.00076 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99925 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.47391 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47086 * 180.02562 * 8 7 5 10 10 C 1.50708 * 109.46988 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99765 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00220 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00292 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99777 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47042 * 90.00376 * 14 12 10 16 16 H 1.48502 * 109.47175 * 210.00171 * 14 12 10 17 17 H 1.48495 * 109.47579 * 330.00112 * 14 12 10 18 18 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 19 19 C 1.38239 * 119.99659 * 84.72923 * 18 2 1 20 20 C 1.38238 * 119.99921 * 179.81225 * 19 18 2 21 21 C 1.38236 * 119.99648 * 0.39154 * 20 19 18 22 22 C 1.38230 * 120.00362 * 359.86389 * 21 20 19 23 23 C 1.38231 * 120.00277 * 265.00472 * 18 2 1 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 26 26 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 27 27 H 1.09004 * 109.47576 * 300.00356 * 7 5 4 28 28 H 1.09007 * 109.47210 * 60.00001 * 7 5 4 29 29 H 1.08999 * 109.46610 * 300.00219 * 8 7 5 30 30 H 1.09001 * 109.46810 * 60.00051 * 8 7 5 31 31 H 1.08999 * 109.47150 * 299.99369 * 9 8 7 32 32 H 1.09001 * 109.47678 * 60.00064 * 9 8 7 33 33 H 0.96998 * 120.00523 * 179.97438 * 13 12 10 34 34 H 1.08005 * 119.99908 * 359.97438 * 19 18 2 35 35 H 1.07995 * 119.99973 * 180.23550 * 20 19 18 36 36 H 1.07996 * 119.99748 * 179.83551 * 21 20 19 37 37 H 1.08000 * 120.00031 * 179.97438 * 22 21 20 38 38 H 1.07997 * 119.99723 * 359.97150 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1857 5 6 2.2171 0.0642 -2.2812 6 8 1.9973 1.2519 -2.2506 7 6 2.7192 -0.5768 -3.5492 8 6 2.8643 0.4895 -4.6369 9 6 3.3735 -0.1615 -5.9245 10 6 3.5170 0.8889 -6.9956 11 1 3.2693 1.9177 -6.7797 12 6 3.9644 0.5365 -8.2512 13 7 4.0901 1.4532 -9.1858 14 14 4.3934 -1.2428 -8.6245 15 1 3.1873 -1.9476 -9.1283 16 1 5.4606 -1.2888 -9.6561 17 1 4.8734 -1.9067 -7.3859 18 6 2.0324 -0.7104 1.2304 19 6 2.1591 -2.0869 1.2304 20 6 2.6236 -2.7383 2.3578 21 6 2.9537 -2.0138 3.4878 22 6 2.8220 -0.6377 3.4896 23 6 2.3611 0.0139 2.3610 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.6883 -1.0398 -3.3633 28 1 2.0103 -1.3371 -3.8775 29 1 1.8954 0.9528 -4.8229 30 1 3.5734 1.2493 -4.3084 31 1 4.3423 -0.6250 -5.7387 32 1 2.6641 -0.9211 -6.2528 33 1 4.4052 1.2054 -10.0691 34 1 1.8977 -2.6533 0.3487 35 1 2.7262 -3.8134 2.3565 36 1 3.3141 -2.5229 4.3695 37 1 3.0795 -0.0718 4.3727 38 1 2.2583 1.0890 2.3623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846781635.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:37 Heat of formation + Delta-G solvation = -83.543857 kcal Electronic energy + Delta-G solvation = -18628.450588 eV Core-core repulsion = 15628.173043 eV Total energy + Delta-G solvation = -3000.277545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.60920 -39.32086 -36.69079 -34.42552 -33.24217 -32.10819 -31.15804 -29.56355 -28.60782 -24.84678 -23.70497 -22.89467 -21.44850 -20.45885 -19.85346 -17.50081 -17.44857 -16.69027 -16.24519 -16.02610 -15.25986 -14.87899 -14.37949 -14.23041 -13.87539 -13.64175 -13.33675 -13.26327 -12.71396 -12.58864 -12.39695 -12.06786 -11.85872 -11.67914 -11.38200 -11.08763 -10.98685 -10.81693 -10.69862 -10.32317 -9.96697 -9.76773 -9.67322 -9.18567 -9.18251 -9.03635 -8.52966 -6.02643 -4.01074 1.01224 1.14271 2.43225 2.74722 3.31238 3.38683 3.41418 3.51940 4.33201 4.45795 4.61905 4.71033 4.81453 4.88609 4.95752 5.02083 5.22131 5.29094 5.30545 5.42920 5.49874 5.54285 5.58794 5.68588 5.78261 5.88891 5.96983 6.16564 6.24273 6.30055 6.46411 6.56004 6.61983 6.70967 6.85313 7.30476 7.39752 7.79146 7.96406 8.55913 9.03279 9.59017 11.10912 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.036637 B = 0.003248 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.077028 B = 8619.138462 C = 9004.320339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 H 0.093 0.907 4 O -0.355 6.355 5 C 0.461 3.539 6 O -0.504 6.504 7 C -0.115 4.115 8 C -0.092 4.092 9 C -0.014 4.014 10 C -0.521 4.521 11 H 0.073 0.927 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.881 3.119 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.265 1.265 18 C -0.087 4.087 19 C -0.093 4.093 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.109 4.109 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.018 0.982 32 H 0.013 0.987 33 H 0.263 0.737 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -8.599 25.562 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.111 0.889 4 O -0.273 6.273 5 C 0.304 3.696 6 O -0.391 6.391 7 C -0.152 4.152 8 C -0.130 4.130 9 C -0.051 4.051 10 C -0.559 4.559 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.190 1.190 18 C -0.088 4.088 19 C -0.111 4.111 20 C -0.140 4.140 21 C -0.137 4.137 22 C -0.139 4.139 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.880 -8.196 25.412 27.143 hybrid contribution 0.227 -0.761 -0.257 0.834 sum -4.653 -8.957 25.155 27.104 Atomic orbital electron populations 1.22166 0.93293 1.03242 1.03274 1.21372 0.94521 0.96422 0.80741 0.88899 1.86590 1.77379 1.42882 1.20423 1.24308 0.73914 0.86211 0.85142 1.90647 1.47699 1.16820 1.83948 1.21710 1.03015 1.01316 0.89164 1.21392 1.02337 0.95972 0.93277 1.19598 0.95861 0.96787 0.92865 1.21130 1.44314 0.95786 0.94628 0.90909 1.25044 0.95044 0.97310 0.96188 1.69917 1.47283 1.33318 1.03747 0.86762 0.78409 0.85704 0.78296 1.20292 1.21413 1.18961 1.19677 1.00622 0.94324 0.94134 1.21077 0.97899 0.93794 0.98315 1.21203 0.99481 1.00087 0.93276 1.21202 0.99850 0.94302 0.98361 1.21098 1.00004 0.94710 0.98133 1.20975 0.98931 0.99936 0.92834 0.91423 0.90738 0.91305 0.88119 0.88099 0.91830 0.91812 0.96415 0.96843 0.92733 0.85243 0.85850 0.86055 0.85845 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.53 37.16 0.35 -1.32 16 2 C 0.12 1.48 2.77 -27.88 -0.08 1.41 16 3 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16 4 O -0.35 -4.89 9.04 -39.25 -0.35 -5.24 16 5 C 0.46 7.34 7.93 36.00 0.29 7.62 16 6 O -0.50 -9.41 15.20 -18.75 -0.29 -9.69 16 7 C -0.11 -1.79 5.81 -27.88 -0.16 -1.95 16 8 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 11 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 12 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 13 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 14 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 18 C -0.09 -0.94 5.01 -104.63 -0.52 -1.46 16 19 C -0.09 -0.94 9.35 -39.58 -0.37 -1.31 16 20 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 21 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.11 -1.02 9.68 -39.58 -0.38 -1.41 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.10 1.39 8.14 -51.92 -0.42 0.96 16 29 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 30 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 31 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 32 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 34 H 0.13 1.27 7.63 -52.48 -0.40 0.87 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -32.70 325.17 -8.13 -40.83 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -5.77 Total: -1.72 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -2.73 Total: -18.61 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.41 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.64 Total: -14.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.70 -8.13 -40.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846781635.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.709 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds