Wall clock time and date at job start Mon Mar 30 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40105 * 120.00080 * 2 1 4 4 C 1.34780 * 120.00140 * 285.00310 * 3 2 1 5 5 O 1.21280 * 120.00006 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00059 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47039 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46792 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.46517 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00369 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99356 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00128 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99513 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47404 * 89.99555 * 13 11 9 15 15 H 1.48500 * 109.46835 * 209.99576 * 13 11 9 16 16 H 1.48497 * 109.47116 * 329.99449 * 13 11 9 17 17 C 1.39675 * 120.00255 * 180.02562 * 2 1 3 18 18 C 1.38914 * 120.07298 * 359.97438 * 17 2 1 19 19 C 1.38100 * 119.92400 * 179.97438 * 18 17 2 20 20 C 1.38288 * 120.07509 * 0.02562 * 19 18 17 21 21 C 1.38283 * 120.14963 * 0.26004 * 20 19 18 22 22 C 1.38104 * 120.07434 * 359.48352 * 21 20 19 23 23 H 1.08994 * 109.47194 * 270.00193 * 1 2 3 24 24 H 1.09005 * 109.47285 * 30.00253 * 1 2 3 25 25 H 1.08997 * 109.47027 * 149.99565 * 1 2 3 26 26 H 0.97001 * 119.99853 * 104.99625 * 3 2 1 27 27 H 1.09002 * 109.47198 * 299.99626 * 6 4 3 28 28 H 1.08997 * 109.47291 * 59.99866 * 6 4 3 29 29 H 1.09003 * 109.46749 * 299.99212 * 7 6 4 30 30 H 1.08997 * 109.47345 * 59.99707 * 7 6 4 31 31 H 1.09003 * 109.46598 * 299.99020 * 8 7 6 32 32 H 1.08997 * 109.47647 * 59.99607 * 8 7 6 33 33 H 0.97004 * 119.99426 * 180.02562 * 12 11 9 34 34 H 1.07999 * 120.03436 * 0.02562 * 18 17 2 35 35 H 1.07999 * 119.95811 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.92149 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.96090 * 179.74776 * 21 20 19 38 38 H 1.07999 * 120.04020 * 180.25992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2133 0.0000 4 6 2.2408 1.9481 -1.1274 5 8 1.7026 1.5586 -2.1421 6 6 2.9938 3.2534 -1.1273 7 6 2.9250 3.8820 -2.5205 8 6 3.6901 5.2070 -2.5204 9 6 3.6228 5.8259 -3.8929 10 1 3.0883 5.3242 -4.6859 11 6 4.2438 7.0327 -4.1361 12 7 4.8943 7.6439 -3.1702 13 14 4.1598 7.8001 -5.8371 14 1 2.9662 8.6792 -5.9252 15 1 5.3851 8.6035 -6.0787 16 1 4.0613 6.7278 -6.8596 17 6 2.1634 -1.2096 -0.0005 18 6 1.4704 -2.4135 -0.0005 19 6 2.1641 -3.6077 -0.0016 20 6 3.5470 -3.6058 -0.0021 21 6 4.2399 -2.4092 0.0038 22 6 3.5525 -1.2114 -0.0004 23 1 -0.3633 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 2.5963 1.5246 0.8115 27 1 2.5458 3.9312 -0.4007 28 1 4.0351 3.0721 -0.8611 29 1 3.3729 3.2044 -3.2474 30 1 1.8836 4.0633 -2.7863 31 1 3.2426 5.8849 -1.7935 32 1 4.7315 5.0253 -2.2548 33 1 5.3308 8.4931 -3.3413 34 1 0.3904 -2.4156 -0.0005 35 1 1.6259 -4.5440 -0.0020 36 1 4.0869 -4.5412 -0.0026 37 1 5.3199 -2.4113 0.0075 38 1 4.0943 -0.2771 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848367041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:01 Heat of formation + Delta-G solvation = 16.327374 kcal Electronic energy + Delta-G solvation = -18747.258563 eV Core-core repulsion = 15783.604511 eV Total energy + Delta-G solvation = -2963.654052 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13431 -38.92022 -36.26763 -34.22410 -32.73126 -31.91469 -30.96683 -29.67347 -27.97684 -25.88085 -23.86626 -22.54135 -21.66549 -20.55144 -19.91723 -18.32410 -17.06319 -16.73399 -16.11122 -15.81528 -15.24739 -14.52115 -14.44506 -14.40739 -14.12637 -13.66687 -13.59614 -13.20520 -12.73617 -12.36763 -12.30510 -11.88069 -11.60732 -11.42523 -11.10553 -10.83058 -10.67775 -10.55502 -10.40177 -9.79528 -9.73753 -9.48741 -9.34168 -9.07024 -9.03999 -8.34059 -7.52374 -5.99738 -4.01250 1.32300 1.46503 1.88293 2.76306 3.33801 3.39722 3.44598 3.78248 4.00372 4.47916 4.77417 4.83744 4.96554 5.07501 5.16057 5.25614 5.35284 5.36532 5.45505 5.53562 5.59597 5.60878 5.64943 5.91009 6.14578 6.18928 6.36105 6.51582 6.65608 6.70859 6.85907 7.08163 7.12311 7.36020 7.39447 7.67666 7.79623 8.00510 8.43863 8.48380 9.05693 9.62915 11.11739 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.003239 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.120012 B = 8641.579799 C = 8889.970376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.432 5.432 3 N -0.530 5.530 4 C 0.511 3.489 5 O -0.520 6.520 6 C -0.130 4.130 7 C -0.094 4.094 8 C 0.021 3.979 9 C -0.519 4.519 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.219 3.781 18 C -0.192 4.192 19 C -0.074 4.074 20 C -0.179 4.179 21 C -0.074 4.074 22 C -0.185 4.185 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.411 0.589 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 -19.516 11.846 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.234 5.234 3 N -0.278 5.278 4 C 0.298 3.702 5 O -0.392 6.392 6 C -0.172 4.172 7 C -0.133 4.133 8 C -0.016 4.016 9 C -0.557 4.557 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.198 1.198 17 C 0.118 3.882 18 C -0.215 4.215 19 C -0.093 4.093 20 C -0.199 4.199 21 C -0.092 4.092 22 C -0.208 4.208 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.096 0.904 26 H 0.252 0.748 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.848 -19.446 11.127 23.155 hybrid contribution 0.222 0.714 -0.482 0.890 sum -5.626 -18.732 10.645 22.268 Atomic orbital electron populations 1.21814 0.76922 1.03752 1.01128 1.45359 1.02193 0.94328 1.81511 1.45324 1.55383 1.13192 1.13852 1.21937 0.80173 0.86047 0.82015 1.90702 1.45314 1.71180 1.31988 1.21862 1.00328 0.91520 1.03447 1.21479 1.01613 0.98722 0.91459 1.19130 0.95060 0.90164 0.97252 1.21259 1.32971 1.05049 0.96448 0.92569 1.25017 0.95329 0.97160 0.96971 1.69959 1.35015 1.16701 1.32024 0.86586 0.77423 0.79302 0.84682 1.20668 1.21234 1.19816 1.17976 0.91560 0.84295 0.94370 1.20620 0.99728 0.90658 1.10531 1.20855 0.94234 0.96969 0.97239 1.20926 0.94299 0.97827 1.06862 1.20917 0.99594 0.91883 0.96841 1.20645 0.92106 0.98918 1.09109 0.92951 0.90867 0.90394 0.74825 0.88888 0.88872 0.92578 0.92604 0.96526 0.96500 0.93033 0.85828 0.86080 0.86466 0.86103 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 10.27 59.85 0.61 1.71 16 2 N -0.43 -5.40 3.30 -65.40 -0.22 -5.61 16 3 N -0.53 -6.56 4.81 31.22 0.15 -6.41 16 4 C 0.51 8.11 7.82 -10.99 -0.09 8.02 16 5 O -0.52 -10.51 16.16 5.56 0.09 -10.42 16 6 C -0.13 -2.05 5.70 -27.88 -0.16 -2.21 16 7 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 8 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 10 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 13 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 C 0.22 2.74 6.62 -83.79 -0.55 2.18 16 18 C -0.19 -2.07 9.21 -39.38 -0.36 -2.43 16 19 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 20 C -0.18 -1.77 10.04 -39.55 -0.40 -2.17 16 21 C -0.07 -0.79 10.04 -39.61 -0.40 -1.19 16 22 C -0.19 -2.28 9.51 -39.38 -0.37 -2.66 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 25 H 0.08 0.70 6.20 -51.93 -0.32 0.38 16 26 H 0.41 3.81 8.83 -182.59 -1.61 2.20 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.12 1.09 6.14 -52.49 -0.32 0.77 16 35 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 1.45 7.36 -52.49 -0.39 1.06 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -34.26 325.36 -8.97 -43.23 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.83 Total: -1.15 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -2.78 Total: -15.30 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.67 Total: -38.21 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.26 -8.97 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848367041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.554 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds