Wall clock time and date at job start Mon Mar 30 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40105 * 120.00080 * 2 1 4 4 C 1.34780 * 120.00140 * 285.00310 * 3 2 1 5 5 O 1.21280 * 120.00006 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00059 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47039 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.46792 * 180.02562 * 7 6 4 9 9 C 1.50705 * 109.46517 * 179.97438 * 8 7 6 10 10 H 1.07991 * 120.00369 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99356 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00128 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99513 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47404 * 89.99555 * 13 11 9 15 15 H 1.48500 * 109.46835 * 209.99576 * 13 11 9 16 16 H 1.48497 * 109.47116 * 329.99449 * 13 11 9 17 17 C 1.39675 * 120.00255 * 180.02562 * 2 1 3 18 18 C 1.38914 * 120.07298 * 359.97438 * 17 2 1 19 19 C 1.38100 * 119.92400 * 179.97438 * 18 17 2 20 20 C 1.38288 * 120.07509 * 0.02562 * 19 18 17 21 21 C 1.38283 * 120.14963 * 0.26004 * 20 19 18 22 22 C 1.38104 * 120.07434 * 359.48352 * 21 20 19 23 23 H 1.08994 * 109.47194 * 270.00193 * 1 2 3 24 24 H 1.09005 * 109.47285 * 30.00253 * 1 2 3 25 25 H 1.08997 * 109.47027 * 149.99565 * 1 2 3 26 26 H 0.97001 * 119.99853 * 104.99625 * 3 2 1 27 27 H 1.09002 * 109.47198 * 299.99626 * 6 4 3 28 28 H 1.08997 * 109.47291 * 59.99866 * 6 4 3 29 29 H 1.09003 * 109.46749 * 299.99212 * 7 6 4 30 30 H 1.08997 * 109.47345 * 59.99707 * 7 6 4 31 31 H 1.09003 * 109.46598 * 299.99020 * 8 7 6 32 32 H 1.08997 * 109.47647 * 59.99607 * 8 7 6 33 33 H 0.97004 * 119.99426 * 180.02562 * 12 11 9 34 34 H 1.07999 * 120.03436 * 0.02562 * 18 17 2 35 35 H 1.07999 * 119.95811 * 180.02562 * 19 18 17 36 36 H 1.08002 * 119.92149 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.96090 * 179.74776 * 21 20 19 38 38 H 1.07999 * 120.04020 * 180.25992 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2133 0.0000 4 6 2.2408 1.9481 -1.1274 5 8 1.7026 1.5586 -2.1421 6 6 2.9938 3.2534 -1.1273 7 6 2.9250 3.8820 -2.5205 8 6 3.6901 5.2070 -2.5204 9 6 3.6228 5.8259 -3.8929 10 1 3.0883 5.3242 -4.6859 11 6 4.2438 7.0327 -4.1361 12 7 4.8943 7.6439 -3.1702 13 14 4.1598 7.8001 -5.8371 14 1 2.9662 8.6792 -5.9252 15 1 5.3851 8.6035 -6.0787 16 1 4.0613 6.7278 -6.8596 17 6 2.1634 -1.2096 -0.0005 18 6 1.4704 -2.4135 -0.0005 19 6 2.1641 -3.6077 -0.0016 20 6 3.5470 -3.6058 -0.0021 21 6 4.2399 -2.4092 0.0038 22 6 3.5525 -1.2114 -0.0004 23 1 -0.3633 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 2.5963 1.5246 0.8115 27 1 2.5458 3.9312 -0.4007 28 1 4.0351 3.0721 -0.8611 29 1 3.3729 3.2044 -3.2474 30 1 1.8836 4.0633 -2.7863 31 1 3.2426 5.8849 -1.7935 32 1 4.7315 5.0253 -2.2548 33 1 5.3308 8.4931 -3.3413 34 1 0.3904 -2.4156 -0.0005 35 1 1.6259 -4.5440 -0.0020 36 1 4.0869 -4.5412 -0.0026 37 1 5.3199 -2.4113 0.0075 38 1 4.0943 -0.2771 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848367041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:01 Heat of formation + Delta-G solvation = -4.209762 kcal Electronic energy + Delta-G solvation = -18748.149120 eV Core-core repulsion = 15783.604511 eV Total energy + Delta-G solvation = -2964.544610 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.20813 -39.93819 -37.28626 -36.10219 -34.19128 -33.47867 -31.78853 -30.56977 -29.64615 -26.99926 -25.56937 -23.46742 -22.78712 -21.87684 -21.36064 -19.28752 -18.58416 -17.93568 -17.72906 -16.78674 -16.49878 -16.43228 -15.51200 -15.32324 -15.10319 -14.86989 -14.70734 -14.32956 -14.27747 -13.80843 -13.53478 -13.18362 -13.12008 -12.64650 -12.54848 -12.43743 -12.35420 -11.89737 -11.58665 -11.52389 -11.36252 -11.23163 -10.85525 -10.56948 -10.53725 -9.84236 -8.40307 -8.21043 -6.30826 0.52024 0.63003 0.94127 1.39319 1.40045 1.50890 1.51696 2.40768 2.97235 2.99249 3.12115 3.77494 4.03843 4.08247 4.17461 4.22575 4.28855 4.36798 4.53002 4.61787 4.64338 4.73755 4.76269 4.85423 4.93409 5.06802 5.14848 5.17864 5.36573 5.52849 5.58594 5.72883 5.74307 5.85680 5.91533 6.18802 6.26239 6.32785 6.42338 6.84577 7.36652 7.38327 8.90306 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.035976 B = 0.003239 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.120012 B = 8641.579799 C = 8889.970376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.442 5.442 3 N -0.512 5.512 4 C 0.517 3.483 5 O -0.570 6.570 6 C -0.121 4.121 7 C -0.081 4.081 8 C 0.027 3.973 9 C -0.548 4.548 10 H 0.050 0.950 11 C 0.004 3.996 12 N -0.928 5.928 13 Si 0.960 3.040 14 H -0.271 1.271 15 H -0.278 1.278 16 H -0.269 1.269 17 C 0.194 3.806 18 C -0.198 4.198 19 C -0.076 4.076 20 C -0.182 4.182 21 C -0.084 4.084 22 C -0.208 4.208 23 H 0.078 0.922 24 H 0.055 0.945 25 H 0.088 0.912 26 H 0.428 0.572 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.004 0.996 32 H 0.003 0.997 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 -20.822 12.383 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.245 5.245 3 N -0.260 5.260 4 C 0.305 3.695 5 O -0.446 6.446 6 C -0.162 4.162 7 C -0.120 4.120 8 C -0.010 4.010 9 C -0.587 4.587 10 H 0.068 0.932 11 C -0.194 4.194 12 N -0.568 5.568 13 Si 0.785 3.215 14 H -0.197 1.197 15 H -0.203 1.203 16 H -0.194 1.194 17 C 0.095 3.905 18 C -0.221 4.221 19 C -0.094 4.094 20 C -0.202 4.202 21 C -0.102 4.102 22 C -0.231 4.231 23 H 0.096 0.904 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.272 0.728 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.167 0.833 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.122 -20.770 11.722 24.623 hybrid contribution 0.329 1.030 -0.604 1.239 sum -5.792 -19.740 11.118 23.384 Atomic orbital electron populations 1.21945 0.75806 1.03419 1.02624 1.45609 1.02874 0.93984 1.82074 1.44972 1.54561 1.13055 1.13369 1.21768 0.79467 0.86131 0.82139 1.90684 1.47588 1.72414 1.33927 1.21670 1.02073 0.91977 1.00477 1.21168 0.99668 0.96541 0.94605 1.19011 0.94625 0.91880 0.95523 1.21689 1.33316 1.05835 0.97811 0.93170 1.25883 0.94762 0.97602 1.01141 1.70058 1.35528 1.17179 1.34078 0.85520 0.77910 0.78433 0.79648 1.19693 1.20293 1.19374 1.18256 0.91903 0.84809 0.95574 1.20927 1.00776 0.90406 1.09980 1.21255 0.94439 0.97767 0.95987 1.21291 0.94752 0.98418 1.05693 1.21191 1.00579 0.91839 0.96634 1.20787 0.92441 0.99415 1.10425 0.90412 0.92642 0.89323 0.72784 0.86429 0.86752 0.94308 0.93945 0.97749 0.97894 0.92635 0.84152 0.83261 0.84157 0.84634 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.01 10.27 127.77 1.31 3.33 16 2 N -0.44 -10.65 3.30 -360.81 -1.19 -11.84 16 3 N -0.51 -12.25 4.81 -173.53 -0.83 -13.09 16 4 C 0.52 16.31 7.82 87.65 0.69 17.00 16 5 O -0.57 -23.47 16.16 -3.03 -0.05 -23.52 16 6 C -0.12 -3.74 5.70 29.85 0.17 -3.57 16 7 C -0.08 -3.52 4.44 30.60 0.14 -3.39 16 8 C 0.03 1.40 4.97 29.85 0.15 1.54 16 9 C -0.55 -32.14 9.11 25.60 0.23 -31.91 16 10 H 0.05 2.92 7.74 -2.92 -0.02 2.90 16 11 C 0.00 0.24 5.46 84.66 0.46 0.71 16 12 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 13 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 C 0.19 4.67 6.62 38.21 0.25 4.93 16 18 C -0.20 -3.89 9.21 22.40 0.21 -3.69 16 19 C -0.08 -1.28 10.04 22.25 0.22 -1.05 16 20 C -0.18 -3.18 10.04 22.29 0.22 -2.95 16 21 C -0.08 -1.70 10.04 22.25 0.22 -1.47 16 22 C -0.21 -5.00 9.51 22.40 0.21 -4.79 16 23 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 1.27 8.07 -2.38 -0.02 1.25 16 25 H 0.09 1.48 6.20 -2.39 -0.01 1.47 16 26 H 0.43 7.33 8.83 -213.32 -1.88 5.45 16 27 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 29 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 30 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 31 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.14 2.16 6.14 -2.91 -0.02 2.14 16 35 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.11 2.74 7.36 -2.91 -0.02 2.71 16 Total: -1.00 -74.62 325.36 3.89 -70.73 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -0.84 Total: 11.63 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.49 Total: -25.32 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.74 Total: -80.68 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.62 3.89 -70.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848367041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.520 kcal (2) G-P(sol) polarization free energy of solvation -74.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds