Wall clock time and date at job start Mon Mar 30 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.92915 * 2 1 4 4 C 1.38102 * 120.07749 * 180.02562 * 3 2 1 5 5 C 1.38905 * 119.92398 * 0.26148 * 4 3 2 6 6 N 1.39669 * 120.07696 * 179.69643 * 5 4 3 7 7 N 1.40104 * 120.00483 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00262 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00140 * 180.02562 * 8 7 6 11 11 C 1.52995 * 109.47477 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47459 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47056 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99887 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99509 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00323 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99788 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46875 * 59.99935 * 17 15 13 19 19 H 1.48490 * 109.47389 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47212 * 300.00433 * 17 15 13 21 21 C 1.38914 * 119.85122 * 359.43987 * 5 4 3 22 22 C 1.38104 * 119.92290 * 0.55683 * 21 5 4 23 23 H 1.08999 * 109.46939 * 89.99788 * 1 2 3 24 24 H 1.09000 * 109.47151 * 209.99976 * 1 2 3 25 25 H 1.09001 * 109.46953 * 330.00054 * 1 2 3 26 26 H 1.08008 * 119.95735 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.03497 * 179.97438 * 4 3 2 28 28 H 0.97008 * 120.00087 * 359.97438 * 6 5 4 29 29 H 0.96998 * 119.99437 * 359.97438 * 7 6 5 30 30 H 1.09003 * 109.47093 * 299.99784 * 10 8 7 31 31 H 1.08998 * 109.47521 * 59.99730 * 10 8 7 32 32 H 1.09003 * 109.46854 * 300.00018 * 11 10 8 33 33 H 1.08997 * 109.47326 * 59.99751 * 11 10 8 34 34 H 1.08998 * 109.47077 * 299.99530 * 12 11 10 35 35 H 1.08997 * 109.46913 * 59.99672 * 12 11 10 36 36 H 0.96997 * 119.99614 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.04010 * 180.27369 * 21 5 4 38 38 H 1.08007 * 119.96364 * 179.71909 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 -0.0001 -0.0066 6 7 5.6707 -0.0002 -0.0135 7 7 6.3712 -1.2135 -0.0191 8 6 7.7190 -1.2135 -0.0253 9 8 8.3254 -0.1632 -0.0265 10 6 8.4724 -2.5186 -0.0318 11 6 9.9766 -2.2391 -0.0387 12 6 10.7416 -3.5641 -0.0447 13 6 12.2232 -3.2887 -0.0521 14 1 12.5832 -2.2705 -0.0530 15 6 13.1191 -4.3367 -0.0589 16 7 12.6807 -5.5766 -0.0595 17 14 14.9557 -3.9955 -0.0689 18 1 15.3213 -3.2187 1.1428 19 1 15.6981 -5.2814 -0.0746 20 1 15.3075 -3.2147 -1.2821 21 6 3.5779 -1.2022 -0.0003 22 6 2.1969 -1.1985 0.0003 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6551 2.1327 0.0004 27 1 4.1161 2.1384 -0.0010 28 1 6.1558 0.8399 -0.0145 29 1 5.8861 -2.0535 -0.0177 30 1 8.2132 -3.0922 0.8581 31 1 8.2050 -3.0881 -0.9218 32 1 10.2355 -1.6656 -0.9288 33 1 10.2444 -1.6694 0.8511 34 1 10.4827 -4.1371 0.8456 35 1 10.4738 -4.1341 -0.9343 36 1 13.3110 -6.3139 -0.0639 37 1 4.1160 -2.1385 -0.0005 38 1 1.6549 -2.1328 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848370478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:57 Heat of formation + Delta-G solvation = 2.015287 kcal Electronic energy + Delta-G solvation = -18119.773671 eV Core-core repulsion = 15155.499000 eV Total energy + Delta-G solvation = -2964.274671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.16247 -39.18783 -36.22750 -34.25408 -33.02062 -32.07224 -31.15203 -30.15633 -27.78263 -25.81437 -24.00765 -23.07715 -21.36594 -20.91497 -19.97016 -18.31184 -17.44961 -16.35002 -15.86377 -15.58475 -15.56654 -14.97258 -14.45476 -14.18845 -13.90033 -13.87626 -13.66907 -13.53955 -12.91102 -12.43441 -12.30908 -11.90270 -11.69377 -11.54852 -11.26727 -11.17656 -10.81271 -10.69083 -10.58278 -9.94080 -9.73276 -9.36286 -9.31360 -9.17481 -9.09174 -8.34045 -7.30465 -5.99856 -4.01523 1.19678 1.31476 1.91903 2.72901 3.35398 3.38977 3.42635 3.61863 4.13831 4.47535 4.57512 4.69798 4.79526 4.94849 5.07626 5.18332 5.36238 5.38329 5.42949 5.52116 5.57366 5.59110 5.75333 5.79799 6.07059 6.10724 6.19037 6.47275 6.54709 6.64826 6.82673 6.88054 7.08430 7.29605 7.62697 7.67317 7.79066 8.00147 8.36618 8.43601 9.05111 9.62539 11.11558 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.063951 B = 0.002602 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.728726 B =10760.278024 C =11166.944798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.152 4.152 3 C -0.065 4.065 4 C -0.190 4.190 5 C 0.218 3.782 6 N -0.545 5.545 7 N -0.534 5.534 8 C 0.512 3.488 9 O -0.538 6.538 10 C -0.127 4.127 11 C -0.094 4.094 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.200 4.200 22 C -0.065 4.065 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.432 0.568 29 H 0.420 0.580 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.017 0.983 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.117 0.883 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.433 9.061 0.119 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.154 4.154 3 C -0.084 4.084 4 C -0.213 4.213 5 C 0.114 3.886 6 N -0.270 5.270 7 N -0.282 5.282 8 C 0.300 3.700 9 O -0.412 6.412 10 C -0.169 4.169 11 C -0.133 4.133 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.223 4.223 22 C -0.083 4.083 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.275 0.725 29 H 0.262 0.738 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.135 0.865 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.782 9.455 0.115 25.592 hybrid contribution 0.995 -0.030 -0.010 0.996 sum -22.786 9.425 0.105 24.659 Atomic orbital electron populations 1.20655 0.91442 1.02284 1.01787 1.19678 0.95947 0.93042 1.06733 1.20723 0.92914 0.97539 0.97207 1.20435 0.94378 0.95854 1.10672 1.17788 0.81065 0.94746 0.95021 1.43438 1.00607 1.00082 1.82833 1.45280 1.04764 1.00322 1.77815 1.21644 0.79408 0.93558 0.75414 1.90696 1.67405 1.33728 1.49384 1.21834 0.98415 0.92294 1.04334 1.21482 0.88816 1.01039 1.01939 1.19131 0.94451 0.90803 0.97254 1.21214 0.91407 0.92715 1.50451 0.92605 1.25019 0.99017 0.95130 0.95332 1.69947 1.34551 0.98191 1.50989 0.86639 0.85221 0.77355 0.78692 1.20224 1.21319 1.20218 1.20445 0.94649 0.95925 1.11291 1.20749 0.93075 0.97572 0.96947 0.91840 0.91994 0.92022 0.85964 0.85846 0.72484 0.73849 0.88793 0.88793 0.92498 0.92503 0.96485 0.96488 0.92970 0.86472 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.15 -1.29 5.88 -104.59 -0.62 -1.91 16 3 C -0.06 -0.56 9.69 -39.61 -0.38 -0.94 16 4 C -0.19 -1.81 9.90 -39.38 -0.39 -2.20 16 5 C 0.22 2.34 6.72 -83.79 -0.56 1.78 16 6 N -0.54 -6.52 6.45 32.41 0.21 -6.31 16 7 N -0.53 -6.51 6.22 31.22 0.19 -6.31 16 8 C 0.51 7.95 7.95 -10.99 -0.09 7.86 16 9 O -0.54 -10.40 15.82 5.56 0.09 -10.31 16 10 C -0.13 -1.98 5.70 -27.89 -0.16 -2.14 16 11 C -0.09 -1.98 4.44 -26.73 -0.12 -2.10 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.85 13.29 55.43 0.74 -26.11 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.20 -1.96 9.48 -39.38 -0.37 -2.33 16 22 C -0.06 -0.57 9.69 -39.61 -0.38 -0.95 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 25 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 26 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.43 5.30 8.01 -182.59 -1.46 3.84 16 29 H 0.42 3.94 6.61 -182.60 -1.21 2.74 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.12 0.98 6.20 -52.49 -0.33 0.65 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 LS Contribution 325.75 15.07 4.91 4.91 Total: -1.00 -33.14 325.75 -9.75 -42.89 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.60 Total: 0.86 kcal Atomic # 6 Polarization: -13.24 SS G_CDS: -3.26 Total: -16.50 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 1.14 Total: -38.73 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.14 -9.75 -42.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848370478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.903 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds