Wall clock time and date at job start Mon Mar 30 2020 06:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38283 * 119.92915 * 2 1 4 4 C 1.38102 * 120.07749 * 180.02562 * 3 2 1 5 5 C 1.38905 * 119.92398 * 0.26148 * 4 3 2 6 6 N 1.39669 * 120.07696 * 179.69643 * 5 4 3 7 7 N 1.40104 * 120.00483 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00262 * 180.02562 * 7 6 5 9 9 O 1.21280 * 119.99847 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.00140 * 180.02562 * 8 7 6 11 11 C 1.52995 * 109.47477 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47459 * 179.97438 * 11 10 8 13 13 C 1.50705 * 109.47056 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99887 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99509 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00323 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99788 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46875 * 59.99935 * 17 15 13 19 19 H 1.48490 * 109.47389 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47212 * 300.00433 * 17 15 13 21 21 C 1.38914 * 119.85122 * 359.43987 * 5 4 3 22 22 C 1.38104 * 119.92290 * 0.55683 * 21 5 4 23 23 H 1.08999 * 109.46939 * 89.99788 * 1 2 3 24 24 H 1.09000 * 109.47151 * 209.99976 * 1 2 3 25 25 H 1.09001 * 109.46953 * 330.00054 * 1 2 3 26 26 H 1.08008 * 119.95735 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.03497 * 179.97438 * 4 3 2 28 28 H 0.97008 * 120.00087 * 359.97438 * 6 5 4 29 29 H 0.96998 * 119.99437 * 359.97438 * 7 6 5 30 30 H 1.09003 * 109.47093 * 299.99784 * 10 8 7 31 31 H 1.08998 * 109.47521 * 59.99730 * 10 8 7 32 32 H 1.09003 * 109.46854 * 300.00018 * 11 10 8 33 33 H 1.08997 * 109.47326 * 59.99751 * 11 10 8 34 34 H 1.08998 * 109.47077 * 299.99530 * 12 11 10 35 35 H 1.08997 * 109.46913 * 59.99672 * 12 11 10 36 36 H 0.96997 * 119.99614 * 180.02562 * 16 15 13 37 37 H 1.07997 * 120.04010 * 180.27369 * 21 5 4 38 38 H 1.08007 * 119.96364 * 179.71909 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2020 -0.0005 5 6 4.2740 -0.0001 -0.0066 6 7 5.6707 -0.0002 -0.0135 7 7 6.3712 -1.2135 -0.0191 8 6 7.7190 -1.2135 -0.0253 9 8 8.3254 -0.1632 -0.0265 10 6 8.4724 -2.5186 -0.0318 11 6 9.9766 -2.2391 -0.0387 12 6 10.7416 -3.5641 -0.0447 13 6 12.2232 -3.2887 -0.0521 14 1 12.5832 -2.2705 -0.0530 15 6 13.1191 -4.3367 -0.0589 16 7 12.6807 -5.5766 -0.0595 17 14 14.9557 -3.9955 -0.0689 18 1 15.3213 -3.2187 1.1428 19 1 15.6981 -5.2814 -0.0746 20 1 15.3075 -3.2147 -1.2821 21 6 3.5779 -1.2022 -0.0003 22 6 2.1969 -1.1985 0.0003 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6551 2.1327 0.0004 27 1 4.1161 2.1384 -0.0010 28 1 6.1558 0.8399 -0.0145 29 1 5.8861 -2.0535 -0.0177 30 1 8.2132 -3.0922 0.8581 31 1 8.2050 -3.0881 -0.9218 32 1 10.2355 -1.6656 -0.9288 33 1 10.2444 -1.6694 0.8511 34 1 10.4827 -4.1371 0.8456 35 1 10.4738 -4.1341 -0.9343 36 1 13.3110 -6.3139 -0.0639 37 1 4.1160 -2.1385 -0.0005 38 1 1.6549 -2.1328 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848370478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:57 Heat of formation + Delta-G solvation = -18.040461 kcal Electronic energy + Delta-G solvation = -18120.643354 eV Core-core repulsion = 15155.499000 eV Total energy + Delta-G solvation = -2965.144354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17485 -40.11196 -37.20938 -36.09786 -34.18428 -33.70575 -31.83313 -31.15118 -29.39716 -26.66349 -25.64935 -24.00356 -22.44667 -22.00518 -21.41138 -19.30323 -18.58234 -18.31018 -17.00046 -16.88485 -16.45365 -16.24583 -15.71635 -15.31072 -15.14867 -14.65915 -14.58746 -14.31688 -14.20017 -13.81013 -13.79110 -13.12696 -12.91809 -12.63201 -12.52856 -12.45193 -12.32194 -12.19746 -11.81456 -11.55729 -11.50568 -11.30332 -10.99945 -10.53442 -10.18906 -9.86419 -8.19934 -8.15695 -6.29505 0.50665 0.58768 0.94577 1.40039 1.42469 1.50609 1.52726 2.41584 2.91961 3.13231 3.14323 3.75874 3.93614 4.07260 4.16482 4.23764 4.24759 4.51182 4.55968 4.70397 4.77659 4.91205 4.95400 4.95780 5.08009 5.15933 5.19736 5.25109 5.36605 5.49684 5.54389 5.68422 5.76135 5.81968 5.87778 6.07891 6.28092 6.31865 6.69221 6.85872 7.28096 7.38953 8.91238 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.063951 B = 0.002602 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.728726 B =10760.278024 C =11166.944798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.154 4.154 3 C -0.073 4.073 4 C -0.196 4.196 5 C 0.195 3.805 6 N -0.553 5.553 7 N -0.515 5.515 8 C 0.515 3.485 9 O -0.583 6.583 10 C -0.118 4.118 11 C -0.082 4.082 12 C 0.025 3.975 13 C -0.548 4.548 14 H 0.051 0.949 15 C 0.003 3.997 16 N -0.928 5.928 17 Si 0.960 3.040 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.270 1.270 21 C -0.209 4.209 22 C -0.074 4.074 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.429 0.571 29 H 0.434 0.566 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.004 0.996 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.128 0.872 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.908 9.180 0.131 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.091 4.091 4 C -0.220 4.220 5 C 0.093 3.907 6 N -0.280 5.280 7 N -0.262 5.262 8 C 0.303 3.697 9 O -0.461 6.461 10 C -0.159 4.159 11 C -0.121 4.121 12 C -0.012 4.012 13 C -0.586 4.586 14 H 0.069 0.931 15 C -0.195 4.195 16 N -0.568 5.568 17 Si 0.785 3.215 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.195 1.195 21 C -0.232 4.232 22 C -0.093 4.093 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.161 0.839 27 H 0.150 0.850 28 H 0.271 0.729 29 H 0.279 0.721 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.146 0.854 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -25.335 9.551 0.128 27.076 hybrid contribution 1.292 -0.059 -0.014 1.293 sum -24.044 9.492 0.114 25.850 Atomic orbital electron populations 1.20706 0.89685 1.03223 1.02523 1.20075 0.97381 0.92919 1.05223 1.21039 0.92629 0.98689 0.96769 1.20681 0.95036 0.95982 1.10289 1.18013 0.80428 0.95686 0.96544 1.43504 1.01032 0.99455 1.83993 1.44932 1.04016 1.01408 1.75842 1.21395 0.80314 0.92666 0.75333 1.90682 1.68522 1.34976 1.51907 1.21634 0.94725 0.92948 1.06612 1.21176 0.92280 0.98046 1.00561 1.19021 0.93759 0.92606 0.95787 1.21664 0.93462 0.92721 1.50754 0.93056 1.25891 1.03945 0.94904 0.94770 1.70051 1.36249 0.99009 1.51525 0.85575 0.79346 0.77567 0.79015 1.19493 1.20432 1.19484 1.20699 0.95353 0.96083 1.11057 1.21054 0.92860 0.98693 0.96650 0.91107 0.91161 0.91072 0.83898 0.85025 0.72941 0.72126 0.86523 0.86530 0.93895 0.93899 0.97804 0.97813 0.92670 0.85410 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.01 71.24 0.71 -0.30 16 2 C -0.15 -2.29 5.88 -19.84 -0.12 -2.40 16 3 C -0.07 -1.11 9.69 22.25 0.22 -0.90 16 4 C -0.20 -3.55 9.90 22.40 0.22 -3.33 16 5 C 0.20 4.01 6.72 38.21 0.26 4.27 16 6 N -0.55 -12.95 6.45 -51.37 -0.33 -13.28 16 7 N -0.51 -12.01 6.22 -173.54 -1.08 -13.09 16 8 C 0.51 15.74 7.95 87.65 0.70 16.43 16 9 O -0.58 -22.82 15.82 -3.03 -0.05 -22.87 16 10 C -0.12 -3.57 5.70 29.84 0.17 -3.40 16 11 C -0.08 -3.49 4.44 30.59 0.14 -3.35 16 12 C 0.03 1.31 4.97 29.85 0.15 1.46 16 13 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 14 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 17 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 18 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 21 C -0.21 -3.77 9.48 22.40 0.21 -3.56 16 22 C -0.07 -1.15 9.69 22.25 0.22 -0.94 16 23 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 25 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 26 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 27 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.43 10.59 8.01 -213.31 -1.71 8.88 16 29 H 0.43 7.38 6.61 -213.32 -1.41 5.98 16 30 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 33 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.13 1.89 6.20 -2.91 -0.02 1.88 16 38 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -71.51 325.75 2.36 -69.15 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -2.05 Total: 15.70 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 3.56 Total: -27.00 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.13 Total: -81.94 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.51 2.36 -69.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848370478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.107 kcal (2) G-P(sol) polarization free energy of solvation -71.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds