Wall clock time and date at job start Mon Mar 30 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38309 * 119.96448 * 2 1 4 4 C 1.38264 * 120.15288 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07351 * 0.28366 * 4 3 2 6 6 C 1.38897 * 119.91971 * 359.51032 * 5 4 3 7 7 N 1.39674 * 120.06995 * 180.24050 * 6 5 4 8 8 N 1.40106 * 120.00150 * 0.22419 * 7 6 5 9 9 C 1.34780 * 119.99801 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99898 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99543 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46860 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47317 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47618 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99836 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00567 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00547 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99701 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47036 * 89.99883 * 18 16 14 20 20 H 1.48507 * 109.47258 * 209.99668 * 18 16 14 21 21 H 1.48498 * 109.47297 * 329.99909 * 18 16 14 22 22 C 1.38075 * 119.96390 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47284 * 89.99508 * 1 2 3 24 24 H 1.08998 * 109.47045 * 209.99911 * 1 2 3 25 25 H 1.09007 * 109.46909 * 329.99743 * 1 2 3 26 26 H 1.08005 * 119.92469 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.96124 * 179.97438 * 4 3 2 28 28 H 1.07990 * 120.03813 * 179.72218 * 5 4 3 29 29 H 0.96998 * 120.00155 * 180.23001 * 7 6 5 30 30 H 0.96998 * 119.99690 * 359.97438 * 8 7 6 31 31 H 1.09000 * 109.47075 * 299.99276 * 11 9 8 32 32 H 1.09000 * 109.47581 * 59.99925 * 11 9 8 33 33 H 1.09005 * 109.47353 * 299.99567 * 12 11 9 34 34 H 1.09000 * 109.47541 * 59.99920 * 12 11 9 35 35 H 1.09005 * 109.47089 * 299.99846 * 13 12 11 36 36 H 1.09000 * 109.47288 * 59.99798 * 13 12 11 37 37 H 0.96994 * 119.99867 * 180.02562 * 17 16 14 38 38 H 1.08007 * 120.03505 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 -0.0048 6 6 3.5859 -1.1953 -0.0005 7 7 4.2866 -2.4036 -0.0009 8 7 5.6877 -2.4009 -0.0008 9 6 6.3638 -3.5668 -0.0017 10 8 5.7594 -4.6183 -0.0020 11 6 7.8708 -3.5638 -0.0011 12 6 8.3836 -5.0053 -0.0029 13 6 9.9136 -5.0023 -0.0029 14 6 10.4188 -6.4221 -0.0041 15 1 9.7185 -7.2444 -0.0052 16 6 11.7747 -6.6715 -0.0049 17 7 12.2156 -7.9106 -0.0054 18 14 12.9858 -5.2493 -0.0037 19 1 13.3072 -4.8739 1.3967 20 1 14.2298 -5.6577 -0.7046 21 1 12.3834 -4.0855 -0.7023 22 6 2.1966 -1.1962 -0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6560 2.1325 0.0004 27 1 4.1167 2.1402 0.0001 28 1 5.3564 0.0140 -0.0090 29 1 3.8033 -3.2446 -0.0012 30 1 6.1710 -1.5599 -0.0010 31 1 8.2335 -3.0485 -0.8905 32 1 8.2329 -3.0501 0.8895 33 1 8.0210 -5.5211 0.8863 34 1 8.0217 -5.5186 -0.8937 35 1 10.2759 -4.4867 -0.8923 36 1 10.2760 -4.4889 0.8877 37 1 13.1696 -8.0859 -0.0056 38 1 1.6566 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848371290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:59 Heat of formation + Delta-G solvation = 5.940909 kcal Electronic energy + Delta-G solvation = -18200.923877 eV Core-core repulsion = 15236.819434 eV Total energy + Delta-G solvation = -2964.104443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21824 -39.24252 -36.23073 -34.37599 -32.88426 -32.39506 -31.91651 -29.14372 -27.65275 -27.18851 -23.87740 -22.88758 -21.43622 -20.73690 -19.98290 -18.06027 -17.49107 -16.67532 -16.29300 -15.83171 -15.68348 -15.03519 -14.33898 -14.29267 -13.95375 -13.79179 -13.74742 -13.27781 -12.95505 -12.69127 -12.50410 -12.06739 -11.80192 -11.71991 -11.41117 -11.26718 -11.05343 -10.82579 -10.14661 -9.93716 -9.75943 -9.61330 -9.48294 -9.17820 -8.98768 -8.53296 -7.41055 -6.02799 -4.01048 1.13719 1.32095 1.85729 2.66012 3.29965 3.37298 3.39536 3.59189 4.07610 4.44954 4.50912 4.63119 4.76958 4.93575 5.04481 5.14454 5.30168 5.30367 5.37562 5.41950 5.46517 5.50148 5.60040 5.80808 5.95306 6.03140 6.25273 6.40776 6.48522 6.49647 6.61224 6.81967 6.85484 7.23321 7.32351 7.40473 7.58107 7.79511 8.30203 8.56296 9.03578 9.58839 11.10803 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.051406 B = 0.002810 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.558031 B = 9963.172854 C =10476.678657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.034 4.034 3 C -0.183 4.183 4 C -0.062 4.062 5 C -0.209 4.209 6 C 0.226 3.774 7 N -0.544 5.544 8 N -0.533 5.533 9 C 0.512 3.488 10 O -0.535 6.535 11 C -0.130 4.130 12 C -0.087 4.087 13 C -0.014 4.014 14 C -0.520 4.520 15 H 0.073 0.927 16 C 0.064 3.936 17 N -0.904 5.904 18 Si 0.882 3.118 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.194 4.194 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.433 0.567 30 H 0.420 0.580 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.016 0.984 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.009 21.098 -0.036 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.034 4.034 3 C -0.203 4.203 4 C -0.081 4.081 5 C -0.233 4.233 6 C 0.121 3.879 7 N -0.269 5.269 8 N -0.281 5.281 9 C 0.299 3.701 10 O -0.409 6.409 11 C -0.172 4.172 12 C -0.125 4.125 13 C -0.052 4.052 14 C -0.558 4.558 15 H 0.091 0.909 16 C -0.137 4.137 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.218 4.218 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.134 0.866 29 H 0.276 0.724 30 H 0.261 0.739 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.030 0.970 37 H 0.072 0.928 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.052 20.178 -0.037 28.448 hybrid contribution 0.875 0.751 0.015 1.153 sum -19.177 20.929 -0.022 28.386 Atomic orbital electron populations 1.20821 0.91163 1.02836 1.02449 1.19600 0.95699 0.92334 0.95812 1.20790 0.94094 0.97300 1.08146 1.20844 0.94132 0.97109 0.96010 1.20429 0.99274 0.91318 1.12254 1.17758 0.90882 0.84813 0.94404 1.43438 0.93743 1.06917 1.82802 1.45244 0.94676 1.10413 1.77810 1.21538 0.90955 0.81956 0.75618 1.90716 1.70235 1.30752 1.49151 1.21853 0.87609 1.03424 1.04281 1.21299 0.97671 0.90748 1.02802 1.19607 0.91156 0.98167 0.96232 1.21139 0.92587 0.91438 1.50627 0.90920 1.25057 0.98444 0.95497 0.94668 1.69922 1.14301 1.18849 1.51187 0.86756 0.80690 0.83234 0.78423 1.20333 1.21430 1.19030 1.20297 0.91098 0.98554 1.11811 0.90979 0.91464 0.91408 0.86382 0.85987 0.86604 0.72429 0.73867 0.88801 0.88795 0.91885 0.91867 0.96545 0.96979 0.92754 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.00 0.36 -0.34 16 2 C -0.03 -0.29 5.88 -104.66 -0.62 -0.90 16 3 C -0.18 -1.51 9.70 -39.55 -0.38 -1.90 16 4 C -0.06 -0.52 10.04 -39.61 -0.40 -0.92 16 5 C -0.21 -1.98 9.48 -39.38 -0.37 -2.35 16 6 C 0.23 2.37 6.72 -83.79 -0.56 1.81 16 7 N -0.54 -6.32 6.45 32.41 0.21 -6.11 16 8 N -0.53 -6.20 6.22 31.22 0.19 -6.00 16 9 C 0.51 7.61 7.95 -10.98 -0.09 7.52 16 10 O -0.53 -10.09 15.82 5.56 0.09 -10.01 16 11 C -0.13 -1.88 5.70 -27.88 -0.16 -2.04 16 12 C -0.09 -1.74 4.44 -26.73 -0.12 -1.86 16 13 C -0.01 -0.33 4.04 -27.89 -0.11 -0.44 16 14 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 15 H 0.07 2.28 7.99 -52.48 -0.42 1.87 16 16 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 22 C -0.19 -1.85 9.55 -39.39 -0.38 -2.22 16 23 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 25 H 0.07 0.34 8.09 -51.92 -0.42 -0.08 16 26 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 27 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 28 H 0.12 0.91 6.20 -52.49 -0.33 0.59 16 29 H 0.43 5.19 8.01 -182.59 -1.46 3.73 16 30 H 0.42 3.66 6.61 -182.59 -1.21 2.46 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 34 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 38 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -34.00 322.15 -9.37 -43.37 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -7.57 Total: 1.64 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -3.26 Total: -17.19 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 1.18 Total: -39.51 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.00 -9.37 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848371290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.314 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds