Wall clock time and date at job start Mon Mar 30 2020 06:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38309 * 119.96448 * 2 1 4 4 C 1.38264 * 120.15288 * 179.97438 * 3 2 1 5 5 C 1.38126 * 120.07351 * 0.28366 * 4 3 2 6 6 C 1.38897 * 119.91971 * 359.51032 * 5 4 3 7 7 N 1.39674 * 120.06995 * 180.24050 * 6 5 4 8 8 N 1.40106 * 120.00150 * 0.22419 * 7 6 5 9 9 C 1.34780 * 119.99801 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99898 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99543 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46860 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47317 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47618 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99836 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00567 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00547 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99701 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47036 * 89.99883 * 18 16 14 20 20 H 1.48507 * 109.47258 * 209.99668 * 18 16 14 21 21 H 1.48498 * 109.47297 * 329.99909 * 18 16 14 22 22 C 1.38075 * 119.96390 * 180.02562 * 2 1 3 23 23 H 1.09003 * 109.47284 * 89.99508 * 1 2 3 24 24 H 1.08998 * 109.47045 * 209.99911 * 1 2 3 25 25 H 1.09007 * 109.46909 * 329.99743 * 1 2 3 26 26 H 1.08005 * 119.92469 * 0.02562 * 3 2 1 27 27 H 1.08002 * 119.96124 * 179.97438 * 4 3 2 28 28 H 1.07990 * 120.03813 * 179.72218 * 5 4 3 29 29 H 0.96998 * 120.00155 * 180.23001 * 7 6 5 30 30 H 0.96998 * 119.99690 * 359.97438 * 8 7 6 31 31 H 1.09000 * 109.47075 * 299.99276 * 11 9 8 32 32 H 1.09000 * 109.47581 * 59.99925 * 11 9 8 33 33 H 1.09005 * 109.47353 * 299.99567 * 12 11 9 34 34 H 1.09000 * 109.47541 * 59.99920 * 12 11 9 35 35 H 1.09005 * 109.47089 * 299.99846 * 13 12 11 36 36 H 1.09000 * 109.47288 * 59.99798 * 13 12 11 37 37 H 0.96994 * 119.99867 * 180.02562 * 17 16 14 38 38 H 1.08007 * 120.03505 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0097 -0.0048 6 6 3.5859 -1.1953 -0.0005 7 7 4.2866 -2.4036 -0.0009 8 7 5.6877 -2.4009 -0.0008 9 6 6.3638 -3.5668 -0.0017 10 8 5.7594 -4.6183 -0.0020 11 6 7.8708 -3.5638 -0.0011 12 6 8.3836 -5.0053 -0.0029 13 6 9.9136 -5.0023 -0.0029 14 6 10.4188 -6.4221 -0.0041 15 1 9.7185 -7.2444 -0.0052 16 6 11.7747 -6.6715 -0.0049 17 7 12.2156 -7.9106 -0.0054 18 14 12.9858 -5.2493 -0.0037 19 1 13.3072 -4.8739 1.3967 20 1 14.2298 -5.6577 -0.7046 21 1 12.3834 -4.0855 -0.7023 22 6 2.1966 -1.1962 -0.0005 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6560 2.1325 0.0004 27 1 4.1167 2.1402 0.0001 28 1 5.3564 0.0140 -0.0090 29 1 3.8033 -3.2446 -0.0012 30 1 6.1710 -1.5599 -0.0010 31 1 8.2335 -3.0485 -0.8905 32 1 8.2329 -3.0501 0.8895 33 1 8.0210 -5.5211 0.8863 34 1 8.0217 -5.5186 -0.8937 35 1 10.2759 -4.4867 -0.8923 36 1 10.2760 -4.4889 0.8877 37 1 13.1696 -8.0859 -0.0056 38 1 1.6566 -2.1316 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848371290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:59 Heat of formation + Delta-G solvation = -16.270792 kcal Electronic energy + Delta-G solvation = -18201.887049 eV Core-core repulsion = 15236.819434 eV Total energy + Delta-G solvation = -2965.067615 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.18100 -40.11974 -37.18039 -36.10912 -34.20952 -33.56553 -32.96474 -30.50302 -28.85127 -27.76109 -25.57156 -23.61079 -22.58516 -21.74009 -21.44036 -19.15260 -18.61001 -18.50126 -17.05718 -16.90265 -16.72728 -16.23886 -15.71290 -15.38076 -15.09377 -14.74369 -14.71848 -14.59582 -13.93306 -13.81622 -13.78886 -13.23457 -12.98600 -12.72559 -12.51080 -12.33083 -12.26032 -11.87677 -11.80791 -11.74256 -11.49245 -11.32826 -11.07556 -10.73953 -10.32783 -9.63588 -8.26695 -8.23957 -6.32456 0.48208 0.62055 0.94215 1.39970 1.43510 1.53819 1.55416 2.40172 2.92505 3.08596 3.12928 3.75466 3.91634 4.04377 4.11274 4.24122 4.29965 4.49677 4.53820 4.69599 4.76818 4.87218 4.90602 4.93380 4.94849 4.99991 5.04261 5.27449 5.37032 5.54713 5.57760 5.60979 5.67120 5.71423 5.79554 6.08345 6.31172 6.33312 6.68397 6.76653 7.28834 7.32018 8.90930 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.051406 B = 0.002810 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.558031 B = 9963.172854 C =10476.678657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 C -0.186 4.186 4 C -0.067 4.067 5 C -0.219 4.219 6 C 0.205 3.795 7 N -0.554 5.554 8 N -0.513 5.513 9 C 0.511 3.489 10 O -0.586 6.586 11 C -0.119 4.119 12 C -0.081 4.081 13 C -0.010 4.010 14 C -0.540 4.540 15 H 0.019 0.981 16 C -0.006 4.006 17 N -0.958 5.958 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.288 1.288 21 H -0.233 1.233 22 C -0.206 4.206 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.139 0.861 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.428 0.572 30 H 0.436 0.564 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.032 0.968 37 H 0.266 0.734 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.874 25.506 -0.040 32.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.206 4.206 4 C -0.086 4.086 5 C -0.242 4.242 6 C 0.103 3.897 7 N -0.280 5.280 8 N -0.261 5.261 9 C 0.300 3.700 10 O -0.464 6.464 11 C -0.159 4.159 12 C -0.119 4.119 13 C -0.047 4.047 14 C -0.578 4.578 15 H 0.037 0.963 16 C -0.201 4.201 17 N -0.599 5.599 18 Si 0.784 3.216 19 H -0.190 1.190 20 H -0.214 1.214 21 H -0.155 1.155 22 C -0.230 4.230 23 H 0.098 0.902 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.156 0.844 27 H 0.164 0.836 28 H 0.148 0.852 29 H 0.269 0.731 30 H 0.280 0.720 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.954 24.674 -0.041 31.732 hybrid contribution 0.687 -0.643 0.018 0.941 sum -19.267 24.031 -0.024 30.801 Atomic orbital electron populations 1.20867 0.89533 1.03633 1.03149 1.19944 0.97063 0.92112 0.95250 1.21152 0.94433 0.98027 1.06989 1.21187 0.94439 0.97735 0.95228 1.20708 1.00210 0.91245 1.12036 1.17991 0.91304 0.84727 0.95698 1.43526 0.93396 1.07265 1.83844 1.44927 0.95087 1.10200 1.75865 1.21524 0.91240 0.81953 0.75331 1.90707 1.71124 1.32708 1.51906 1.21682 0.87213 0.99636 1.07400 1.21057 0.95819 0.94530 1.00541 1.19554 0.93029 0.94545 0.97596 1.21564 0.92298 0.93290 1.50610 0.96292 1.26224 1.00936 0.99045 0.93923 1.70112 1.15004 1.21999 1.52762 0.85486 0.77124 0.79581 0.79360 1.18955 1.21444 1.15547 1.20520 0.91107 0.99366 1.12007 0.90239 0.91224 0.90113 0.84362 0.83627 0.85192 0.73067 0.71968 0.85623 0.85559 0.94336 0.94341 0.94838 0.94980 0.92557 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.04 -0.66 5.88 -19.89 -0.12 -0.78 16 3 C -0.19 -2.60 9.70 22.29 0.22 -2.39 16 4 C -0.07 -0.95 10.04 22.25 0.22 -0.72 16 5 C -0.22 -3.65 9.48 22.40 0.21 -3.44 16 6 C 0.21 4.08 6.72 38.21 0.26 4.34 16 7 N -0.55 -12.53 6.45 -51.37 -0.33 -12.86 16 8 N -0.51 -11.03 6.22 -173.53 -1.08 -12.10 16 9 C 0.51 14.67 7.95 87.66 0.70 15.37 16 10 O -0.59 -22.69 15.82 -3.03 -0.05 -22.74 16 11 C -0.12 -3.10 5.70 29.85 0.17 -2.93 16 12 C -0.08 -3.24 4.44 30.59 0.14 -3.10 16 13 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 14 C -0.54 -32.04 9.66 25.60 0.25 -31.79 16 15 H 0.02 1.27 7.99 -2.91 -0.02 1.24 16 16 C -0.01 -0.33 5.47 84.65 0.46 0.13 16 17 N -0.96 -61.68 13.96 21.45 0.30 -61.38 16 18 Si 0.96 43.31 27.47 68.60 1.88 45.20 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.23 -9.19 6.54 99.48 0.65 -8.54 16 22 C -0.21 -3.78 9.55 22.40 0.21 -3.56 16 23 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 25 H 0.08 0.61 8.09 -2.38 -0.02 0.59 16 26 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 27 H 0.15 1.29 8.06 -2.91 -0.02 1.26 16 28 H 0.13 1.66 6.20 -2.92 -0.02 1.64 16 29 H 0.43 10.48 8.01 -213.32 -1.71 8.77 16 30 H 0.44 6.29 6.61 -213.32 -1.41 4.88 16 31 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.03 1.41 7.20 -2.38 -0.02 1.39 16 36 H 0.03 1.33 7.57 -2.39 -0.02 1.31 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 38 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -77.81 322.15 2.17 -75.64 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -2.11 Total: 17.90 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 3.55 Total: -29.66 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.11 Total: -86.35 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -77.81 2.17 -75.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848371290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.370 kcal (2) G-P(sol) polarization free energy of solvation -77.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds