Wall clock time and date at job start Mon Mar 30 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.38283 * 119.95089 * 265.25268 * 3 2 1 5 5 C 1.38382 * 120.36847 * 180.30069 * 4 3 2 6 6 C 1.37972 * 120.27470 * 359.72496 * 5 4 3 7 7 C 1.39599 * 119.89181 * 359.97438 * 6 5 4 8 8 C 1.47432 * 120.18203 * 180.02562 * 7 6 5 9 9 N 1.29759 * 120.00198 * 179.97438 * 8 7 6 10 10 N 1.40106 * 120.00096 * 180.02562 * 9 8 7 11 11 C 1.46492 * 119.99868 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.47608 * 329.99338 * 11 10 9 13 13 C 1.53001 * 109.47329 * 89.99570 * 11 10 9 14 14 C 1.50696 * 109.47083 * 209.99718 * 11 10 9 15 15 H 1.07996 * 120.00155 * 359.97438 * 14 11 10 16 16 C 1.37883 * 120.00075 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00205 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99996 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.47075 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47160 * 119.99955 * 18 16 14 21 21 H 1.48493 * 109.47169 * 239.99929 * 18 16 14 22 22 C 1.38452 * 119.95130 * 84.99988 * 3 2 1 23 23 O 1.35843 * 120.13573 * 359.97221 * 22 3 2 24 24 H 1.09001 * 109.47475 * 299.99737 * 1 2 3 25 25 H 1.09007 * 109.47157 * 60.00302 * 1 2 3 26 26 H 1.09003 * 109.47527 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46786 * 239.99973 * 2 1 3 28 28 H 1.08995 * 109.46615 * 120.00075 * 2 1 3 29 29 H 1.08002 * 119.81650 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.86387 * 179.74238 * 5 4 3 31 31 H 1.07996 * 120.05550 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.00386 * 359.97438 * 8 7 6 33 33 H 0.97000 * 119.99591 * 359.97438 * 10 9 8 34 34 H 1.08999 * 109.47162 * 299.99814 * 13 11 10 35 35 H 1.08999 * 109.47081 * 60.00056 * 13 11 10 36 36 H 1.09007 * 109.47380 * 180.02562 * 13 11 10 37 37 H 0.96992 * 120.00239 * 180.02562 * 17 16 14 38 38 H 0.96700 * 114.00288 * 269.72858 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3559 2.0387 -1.1941 5 6 2.8238 3.3409 -1.2036 6 6 2.9665 4.0375 -0.0212 7 6 2.6372 3.4267 1.1902 8 6 2.7867 4.1652 2.4574 9 7 2.4791 3.5943 3.5813 10 7 2.6207 4.2963 4.7855 11 6 2.2729 3.6519 6.0542 12 1 1.4788 2.9241 5.8865 13 6 3.5043 2.9417 6.6200 14 6 1.7998 4.6945 7.0341 15 1 1.7623 5.7333 6.7412 16 6 1.4146 4.3222 8.3046 17 7 1.4597 3.0571 8.6612 18 14 0.8289 5.6147 9.5194 19 1 0.8711 6.9530 8.8771 20 1 -0.5639 5.3090 9.9342 21 1 1.7130 5.6095 10.7124 22 6 2.1641 2.1074 1.1951 23 8 1.8410 1.5031 2.3680 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 2.2471 1.5004 -2.1240 30 1 3.0781 3.8142 -2.1406 31 1 3.3316 5.0538 -0.0328 32 1 3.1523 5.1815 2.4503 33 1 2.9490 5.2090 4.7790 34 1 3.8465 2.1876 5.9113 35 1 4.2983 3.6694 6.7878 36 1 3.2454 2.4618 7.5639 37 1 1.1884 2.7952 9.5548 38 1 0.9190 1.6252 2.6325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848407988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:00 Heat of formation + Delta-G solvation = 13.725587 kcal Electronic energy + Delta-G solvation = -19070.430284 eV Core-core repulsion = 16106.663409 eV Total energy + Delta-G solvation = -2963.766874 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74713 -36.42275 -36.16377 -34.49680 -33.52750 -31.53247 -29.83581 -28.89449 -26.99741 -25.22745 -23.81361 -23.20056 -21.15998 -20.22906 -19.83516 -17.85082 -16.99421 -16.18676 -15.73439 -15.07837 -14.96859 -14.64009 -14.11994 -13.84639 -13.57093 -13.12018 -12.75851 -12.58061 -12.46774 -12.19130 -11.85741 -11.66265 -11.37268 -11.30015 -11.05979 -10.86155 -10.81035 -10.55185 -10.28000 -10.23449 -10.15716 -9.30945 -9.01272 -8.73462 -8.49301 -8.35696 -6.76371 -6.14422 -4.22870 1.21293 1.45437 3.06490 3.22378 3.30109 3.33217 3.81299 3.99665 4.35734 4.59441 4.76926 4.92711 5.17464 5.19341 5.21306 5.36890 5.43322 5.46999 5.61477 5.79908 5.92022 6.00523 6.11656 6.14982 6.27630 6.41574 6.58770 6.72841 6.77203 6.96182 7.04047 7.05380 7.17374 7.57960 7.77885 7.87230 8.12716 8.14904 8.30417 8.85269 9.34420 9.44103 10.91331 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029748 B = 0.004065 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.999737 B = 6886.421213 C = 7380.978143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.110 4.110 4 C -0.117 4.117 5 C -0.128 4.128 6 C -0.107 4.107 7 C -0.030 4.030 8 C -0.028 4.028 9 N -0.165 5.165 10 N -0.623 5.623 11 C 0.298 3.702 12 H 0.043 0.957 13 C -0.150 4.150 14 C -0.531 4.531 15 H 0.060 0.940 16 C 0.067 3.933 17 N -0.885 5.885 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.125 3.875 23 O -0.470 6.470 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.366 0.634 34 H 0.014 0.986 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.264 0.736 38 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -2.070 -17.655 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.111 4.111 4 C -0.136 4.136 5 C -0.146 4.146 6 C -0.128 4.128 7 C -0.032 4.032 8 C -0.235 4.235 9 N 0.021 4.979 10 N -0.359 5.359 11 C 0.196 3.804 12 H 0.060 0.940 13 C -0.209 4.209 14 C -0.570 4.570 15 H 0.078 0.922 16 C -0.136 4.136 17 N -0.523 5.523 18 Si 0.729 3.271 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.077 3.923 23 O -0.280 6.280 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.202 0.798 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.108 0.892 37 H 0.074 0.926 38 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.223 -3.294 -16.819 17.140 hybrid contribution -0.227 2.097 0.534 2.175 sum -0.004 -1.197 -16.285 16.329 Atomic orbital electron populations 1.21704 0.95014 1.01552 1.01918 1.20414 0.95903 0.92563 1.02932 1.20145 1.01469 0.97027 0.92458 1.20863 1.00787 0.95168 0.96812 1.20915 1.01172 0.94814 0.97709 1.21008 1.00873 0.99876 0.91077 1.18880 0.99972 0.92478 0.91905 1.23371 1.11673 0.97999 0.90426 1.74198 1.05953 1.24320 0.93409 1.49217 1.71314 1.13888 1.01493 1.18527 0.92949 0.92772 0.76167 0.93959 1.22193 0.98191 0.98480 1.02055 1.21282 1.44775 0.93902 0.97060 0.92218 1.24858 0.95237 0.95609 0.97906 1.69901 1.47151 1.15260 1.19950 0.86385 0.78428 0.81417 0.80825 1.19801 1.20824 1.20829 1.18398 0.98837 0.89794 0.85284 1.84817 1.33010 1.74070 1.36075 0.92639 0.92852 0.92505 0.91472 0.90271 0.86336 0.86175 0.85854 0.88310 0.79776 0.96685 0.95670 0.89219 0.92614 0.75759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.08 -0.89 5.78 -27.88 -0.16 -1.05 16 3 C -0.11 -1.43 5.14 -104.53 -0.54 -1.97 16 4 C -0.12 -1.32 9.67 -39.51 -0.38 -1.71 16 5 C -0.13 -1.42 10.03 -39.63 -0.40 -1.81 16 6 C -0.11 -1.36 9.79 -39.17 -0.38 -1.74 16 7 C -0.03 -0.46 5.88 -104.92 -0.62 -1.08 16 8 C -0.03 -0.49 10.75 -14.68 -0.16 -0.65 16 9 N -0.16 -3.41 9.35 32.15 0.30 -3.11 16 10 N -0.62 -13.96 6.10 -5.89 -0.04 -13.99 16 11 C 0.30 7.64 3.23 -69.09 -0.22 7.41 16 12 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.15 -3.77 9.29 37.16 0.35 -3.43 16 14 C -0.53 -14.28 8.74 -34.44 -0.30 -14.58 16 15 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -24.67 11.32 55.43 0.63 -24.04 16 18 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.12 1.93 6.69 -38.78 -0.26 1.67 16 23 O -0.47 -7.86 10.51 -19.25 -0.20 -8.06 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.63 8.05 -51.93 -0.42 0.21 16 28 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 29 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.10 1.57 8.02 -52.49 -0.42 1.15 16 33 H 0.37 7.66 8.58 -182.59 -1.57 6.09 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 37 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.39 5.54 9.06 45.56 0.41 5.96 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -29.38 324.91 -8.29 -37.67 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.06 Total: 9.17 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.80 Total: -18.26 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.89 Total: -41.14 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.20 Total: -8.06 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.38 -8.29 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848407988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.396 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds