Wall clock time and date at job start Mon Mar 30 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47020 * 2 1 4 4 C 1.38283 * 119.95089 * 265.25268 * 3 2 1 5 5 C 1.38382 * 120.36847 * 180.30069 * 4 3 2 6 6 C 1.37972 * 120.27470 * 359.72496 * 5 4 3 7 7 C 1.39599 * 119.89181 * 359.97438 * 6 5 4 8 8 C 1.47432 * 120.18203 * 180.02562 * 7 6 5 9 9 N 1.29759 * 120.00198 * 179.97438 * 8 7 6 10 10 N 1.40106 * 120.00096 * 180.02562 * 9 8 7 11 11 C 1.46492 * 119.99868 * 179.97438 * 10 9 8 12 12 H 1.09006 * 109.47608 * 329.99338 * 11 10 9 13 13 C 1.53001 * 109.47329 * 89.99570 * 11 10 9 14 14 C 1.50696 * 109.47083 * 209.99718 * 11 10 9 15 15 H 1.07996 * 120.00155 * 359.97438 * 14 11 10 16 16 C 1.37883 * 120.00075 * 179.97438 * 14 11 10 17 17 N 1.31512 * 120.00205 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 119.99996 * 179.97438 * 16 14 11 19 19 H 1.48507 * 109.47075 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47160 * 119.99955 * 18 16 14 21 21 H 1.48493 * 109.47169 * 239.99929 * 18 16 14 22 22 C 1.38452 * 119.95130 * 84.99988 * 3 2 1 23 23 O 1.35843 * 120.13573 * 359.97221 * 22 3 2 24 24 H 1.09001 * 109.47475 * 299.99737 * 1 2 3 25 25 H 1.09007 * 109.47157 * 60.00302 * 1 2 3 26 26 H 1.09003 * 109.47527 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46786 * 239.99973 * 2 1 3 28 28 H 1.08995 * 109.46615 * 120.00075 * 2 1 3 29 29 H 1.08002 * 119.81650 * 0.02562 * 4 3 2 30 30 H 1.08007 * 119.86387 * 179.74238 * 5 4 3 31 31 H 1.07996 * 120.05550 * 180.02562 * 6 5 4 32 32 H 1.08002 * 120.00386 * 359.97438 * 8 7 6 33 33 H 0.97000 * 119.99591 * 359.97438 * 10 9 8 34 34 H 1.08999 * 109.47162 * 299.99814 * 13 11 10 35 35 H 1.08999 * 109.47081 * 60.00056 * 13 11 10 36 36 H 1.09007 * 109.47380 * 180.02562 * 13 11 10 37 37 H 0.96992 * 120.00239 * 180.02562 * 17 16 14 38 38 H 0.96700 * 114.00288 * 269.72858 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3559 2.0387 -1.1941 5 6 2.8238 3.3409 -1.2036 6 6 2.9665 4.0375 -0.0212 7 6 2.6372 3.4267 1.1902 8 6 2.7867 4.1652 2.4574 9 7 2.4791 3.5943 3.5813 10 7 2.6207 4.2963 4.7855 11 6 2.2729 3.6519 6.0542 12 1 1.4788 2.9241 5.8865 13 6 3.5043 2.9417 6.6200 14 6 1.7998 4.6945 7.0341 15 1 1.7623 5.7333 6.7412 16 6 1.4146 4.3222 8.3046 17 7 1.4597 3.0571 8.6612 18 14 0.8289 5.6147 9.5194 19 1 0.8711 6.9530 8.8771 20 1 -0.5639 5.3090 9.9342 21 1 1.7130 5.6095 10.7124 22 6 2.1641 2.1074 1.1951 23 8 1.8410 1.5031 2.3680 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 2.2471 1.5004 -2.1240 30 1 3.0781 3.8142 -2.1406 31 1 3.3316 5.0538 -0.0328 32 1 3.1523 5.1815 2.4503 33 1 2.9490 5.2090 4.7790 34 1 3.8465 2.1876 5.9113 35 1 4.2983 3.6694 6.7878 36 1 3.2454 2.4618 7.5639 37 1 1.1884 2.7952 9.5548 38 1 0.9190 1.6252 2.6325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848407988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:59 Heat of formation + Delta-G solvation = -4.633692 kcal Electronic energy + Delta-G solvation = -19071.226402 eV Core-core repulsion = 16106.663409 eV Total energy + Delta-G solvation = -2964.562993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81740 -38.01822 -37.32605 -36.04300 -34.82543 -33.22335 -31.20116 -29.86451 -28.61772 -27.29947 -24.71976 -24.49041 -22.48229 -21.87648 -21.06961 -19.09970 -18.65610 -17.64368 -17.10543 -16.72143 -16.15047 -15.96339 -15.34077 -15.05753 -14.63859 -14.49169 -14.40349 -14.10578 -13.68426 -13.48631 -13.11418 -12.97983 -12.82787 -12.79734 -12.54738 -12.34446 -12.20465 -12.16774 -12.05510 -11.70109 -11.41998 -11.09586 -10.62115 -10.57969 -9.90965 -9.37775 -8.36394 -8.16936 -6.35558 0.09848 0.45817 1.41681 1.42474 1.54505 1.79487 2.19533 2.47662 2.91029 3.10589 3.51750 3.77878 3.95671 4.15617 4.35212 4.41544 4.50892 4.57808 4.67172 4.73399 4.76600 4.93565 5.00272 5.09654 5.12122 5.15602 5.21929 5.23957 5.41844 5.47808 5.59118 5.64022 5.71221 5.79365 5.88718 6.04348 6.18501 6.41316 6.84615 6.96806 7.36178 7.80616 8.87043 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029748 B = 0.004065 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.999737 B = 6886.421213 C = 7380.978143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.120 4.120 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.099 4.099 7 C -0.071 4.071 8 C 0.008 3.992 9 N -0.212 5.212 10 N -0.643 5.643 11 C 0.310 3.690 12 H 0.003 0.997 13 C -0.135 4.135 14 C -0.547 4.547 15 H 0.060 0.940 16 C 0.019 3.981 17 N -0.914 5.914 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.276 1.276 22 C 0.103 3.897 23 O -0.491 6.491 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.152 0.848 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.370 0.630 34 H 0.013 0.987 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.267 0.733 38 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.228 -1.086 -20.500 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.141 4.141 6 C -0.120 4.120 7 C -0.073 4.073 8 C -0.201 4.201 9 N -0.023 5.023 10 N -0.380 5.380 11 C 0.206 3.794 12 H 0.021 0.979 13 C -0.194 4.194 14 C -0.586 4.586 15 H 0.079 0.921 16 C -0.181 4.181 17 N -0.553 5.553 18 Si 0.796 3.204 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.202 1.202 22 C 0.055 3.945 23 O -0.301 6.301 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.170 0.830 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.135 0.865 33 H 0.207 0.793 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.379 -2.311 -19.683 19.822 hybrid contribution -0.249 1.738 1.053 2.048 sum 0.131 -0.573 -18.630 18.639 Atomic orbital electron populations 1.21686 0.94174 1.02344 1.01698 1.20430 0.96612 0.91541 1.03035 1.20398 1.01618 0.97860 0.92220 1.21335 0.98308 0.95421 0.97250 1.21372 0.99576 0.94579 0.98529 1.21344 0.99359 1.00873 0.90381 1.19066 1.03200 0.93051 0.92033 1.24011 1.07000 0.98576 0.90488 1.74275 1.09463 1.24993 0.93521 1.48684 1.73909 1.14024 1.01358 1.18070 0.91644 0.91894 0.77750 0.97919 1.22011 0.98270 0.98273 1.00858 1.21550 1.45184 0.94136 0.97777 0.92147 1.25714 0.95159 0.97616 0.99618 1.70026 1.47683 1.17065 1.20478 0.85319 0.77877 0.78900 0.78344 1.19134 1.20442 1.20206 1.18774 0.99650 0.90359 0.85672 1.84791 1.33453 1.74517 1.37360 0.94093 0.91791 0.91257 0.89210 0.92269 0.83023 0.82384 0.83580 0.86516 0.79336 0.96820 0.95306 0.91256 0.92397 0.75524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.89 71.98 0.71 -1.86 16 2 C -0.08 -1.62 5.78 29.85 0.17 -1.45 16 3 C -0.12 -2.90 5.14 -19.80 -0.10 -3.01 16 4 C -0.10 -1.93 9.67 22.31 0.22 -1.71 16 5 C -0.12 -2.15 10.03 22.24 0.22 -1.93 16 6 C -0.10 -2.19 9.79 22.54 0.22 -1.97 16 7 C -0.07 -2.14 5.88 -20.06 -0.12 -2.25 16 8 C 0.01 0.30 10.75 87.42 0.94 1.24 16 9 N -0.21 -9.11 9.35 -52.20 -0.49 -9.60 16 10 N -0.64 -30.00 6.10 -172.53 -1.05 -31.05 16 11 C 0.31 16.70 3.23 44.25 0.14 16.85 16 12 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 13 C -0.13 -7.09 9.29 71.98 0.67 -6.42 16 14 C -0.55 -30.29 8.74 25.60 0.22 -30.07 16 15 H 0.06 3.25 7.79 -2.91 -0.02 3.23 16 16 C 0.02 1.05 5.30 84.66 0.45 1.50 16 17 N -0.91 -52.44 11.32 21.45 0.24 -52.19 16 18 Si 0.97 42.93 29.54 68.60 2.03 44.96 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 C 0.10 3.17 6.69 22.79 0.15 3.32 16 23 O -0.49 -17.34 10.51 -91.78 -0.96 -18.31 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.42 8.05 -2.39 -0.02 1.40 16 28 H 0.06 1.45 7.68 -2.39 -0.02 1.43 16 29 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.12 3.57 8.02 -2.91 -0.02 3.55 16 33 H 0.37 15.95 8.58 -213.32 -1.83 14.12 16 34 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 3.90 6.07 -2.38 -0.01 3.89 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.39 12.28 9.06 -74.06 -0.67 11.61 16 Total: -1.00 -65.67 324.91 2.23 -63.44 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -1.44 Total: 30.51 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 3.90 Total: -27.76 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -1.30 Total: -92.85 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.96 Total: -18.31 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -65.67 2.23 -63.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848407988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.808 kcal (2) G-P(sol) polarization free energy of solvation -65.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds