Wall clock time and date at job start Mon Mar 30 2020 07:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21216 * 120.00130 * 2 1 4 4 C 1.47526 * 119.99872 * 180.02562 * 2 1 3 5 5 C 1.39383 * 119.69686 * 179.72736 * 4 2 1 6 6 C 1.38777 * 119.20158 * 179.77121 * 5 4 2 7 7 C 1.38296 * 118.59768 * 0.49539 * 6 5 4 8 8 C 1.39564 * 119.32770 * 359.74691 * 7 6 5 9 9 N 1.38967 * 119.62138 * 179.97438 * 8 7 6 10 10 C 1.46496 * 119.99919 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46856 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47484 * 300.00297 * 11 10 9 13 13 C 1.53009 * 109.47017 * 60.00406 * 11 10 9 14 14 C 1.50698 * 109.47102 * 179.97438 * 11 10 9 15 15 H 1.07997 * 120.00257 * 0.02562 * 14 11 10 16 16 C 1.37884 * 120.00083 * 179.97438 * 14 11 10 17 17 N 1.31512 * 119.99975 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00048 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.46923 * 90.00216 * 18 16 14 20 20 H 1.48491 * 109.47315 * 210.00252 * 18 16 14 21 21 H 1.48498 * 109.47093 * 330.00768 * 18 16 14 22 22 N 1.32003 * 120.74972 * 0.02562 * 8 7 6 23 23 H 1.09001 * 109.47403 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47044 * 300.00219 * 1 2 3 25 25 H 1.08997 * 109.46876 * 59.99891 * 1 2 3 26 26 H 1.07994 * 120.40287 * 359.97438 * 5 4 2 27 27 H 1.07997 * 120.69789 * 180.21969 * 6 5 4 28 28 H 1.07996 * 120.33442 * 179.77438 * 7 6 5 29 29 H 0.97005 * 119.99620 * 180.02562 * 9 8 7 30 30 H 1.08998 * 109.47604 * 299.99989 * 10 9 8 31 31 H 1.09005 * 109.47101 * 60.00553 * 10 9 8 32 32 H 1.09004 * 109.46799 * 60.00058 * 12 11 10 33 33 H 1.09003 * 109.47204 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.46963 * 299.99805 * 12 11 10 35 35 H 1.09002 * 109.46832 * 59.99719 * 13 11 10 36 36 H 1.08993 * 109.46791 * 179.97438 * 13 11 10 37 37 H 1.08994 * 109.46833 * 299.99699 * 13 11 10 38 38 H 0.96996 * 120.00261 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1130 1.0497 0.0000 4 6 2.2445 -1.2776 -0.0006 5 6 3.6383 -1.2703 -0.0063 6 6 4.3218 -2.4781 -0.0020 7 6 3.5910 -3.6522 -0.0025 8 6 2.1968 -3.5896 -0.0020 9 7 1.4565 -4.7657 -0.0031 10 6 2.1399 -6.0614 -0.0042 11 6 1.1019 -7.1855 -0.0046 12 6 0.2263 -7.0717 1.2449 13 6 0.2257 -7.0700 -1.2536 14 6 1.8049 -8.5184 -0.0064 15 1 2.8841 -8.5598 -0.0067 16 6 1.0703 -9.6853 -0.0065 17 7 -0.2438 -9.6350 -0.0056 18 14 1.9417 -11.3376 -0.0094 19 1 2.1746 -11.7768 1.3900 20 1 1.0993 -12.3403 -0.7092 21 1 3.2442 -11.2090 -0.7110 22 7 1.5734 -2.4261 -0.0016 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.1799 -0.3360 -0.0108 27 1 5.4015 -2.5006 -0.0027 28 1 4.0942 -4.6078 -0.0029 29 1 0.4871 -4.7285 -0.0031 30 1 2.7640 -6.1424 -0.8942 31 1 2.7638 -6.1439 0.8859 32 1 -0.2822 -6.1075 1.2456 33 1 -0.5135 -7.8722 1.2444 34 1 0.8505 -7.1540 2.1347 35 1 0.8495 -7.1511 -2.1438 36 1 -0.5135 -7.8710 -1.2541 37 1 -0.2828 -6.1059 -1.2528 38 1 -0.7606 -10.4558 -0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865869354.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:11 Heat of formation + Delta-G solvation = -17.442255 kcal Electronic energy + Delta-G solvation = -19292.501148 eV Core-core repulsion = 16327.382734 eV Total energy + Delta-G solvation = -2965.118414 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.49371 -39.98935 -38.51487 -35.59276 -33.72821 -33.12419 -31.09402 -30.07940 -27.55828 -27.46985 -26.52790 -25.28123 -23.35752 -21.35422 -20.25719 -18.92534 -17.90180 -17.69761 -16.72719 -16.59260 -16.30355 -16.13634 -15.76752 -15.52853 -15.06459 -14.75704 -14.41914 -14.20411 -14.00974 -13.26021 -13.10086 -13.07277 -13.02367 -12.84508 -12.72926 -12.55606 -12.29225 -12.09941 -11.55937 -11.40594 -11.13269 -11.12204 -10.69878 -10.68905 -10.36021 -10.33435 -8.61711 -7.99591 -6.15979 -0.44141 0.50867 1.31974 1.45233 1.48738 1.55683 2.20417 2.49788 2.94282 2.95001 3.24880 3.69735 4.00125 4.21466 4.23483 4.33940 4.47752 4.54534 4.55631 4.65426 4.70340 4.73518 4.96378 5.05645 5.08108 5.16049 5.18124 5.21520 5.29635 5.44433 5.57904 5.67495 5.69603 5.99432 6.13865 6.23119 6.32907 6.44237 6.72361 6.90293 7.15070 7.52468 8.99430 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.039137 B = 0.004062 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.258399 B = 6892.268157 C = 7411.156741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.418 3.582 3 O -0.480 6.480 4 C 0.068 3.932 5 C -0.188 4.188 6 C -0.036 4.036 7 C -0.216 4.216 8 C 0.387 3.613 9 N -0.712 5.712 10 C 0.154 3.846 11 C 0.051 3.949 12 C -0.120 4.120 13 C -0.120 4.120 14 C -0.523 4.523 15 H 0.056 0.944 16 C 0.025 3.975 17 N -0.903 5.903 18 Si 0.946 3.054 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.270 1.270 22 N -0.527 5.527 23 H 0.091 0.909 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.149 0.851 27 H 0.172 0.828 28 H 0.145 0.855 29 H 0.402 0.598 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 13.129 -0.004 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.297 3.703 3 O -0.356 6.356 4 C -0.068 4.068 5 C -0.212 4.212 6 C -0.061 4.061 7 C -0.242 4.242 8 C 0.148 3.852 9 N -0.343 5.343 10 C 0.030 3.970 11 C 0.050 3.950 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.175 4.175 17 N -0.542 5.542 18 Si 0.773 3.227 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.194 1.194 22 N -0.249 5.249 23 H 0.110 0.890 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.166 0.834 27 H 0.189 0.811 28 H 0.163 0.837 29 H 0.238 0.762 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.892 13.398 -0.010 13.952 hybrid contribution 0.675 -1.385 0.013 1.541 sum 4.567 12.013 0.003 12.852 Atomic orbital electron populations 1.22119 0.90691 1.06213 1.05570 1.22762 0.93227 0.85495 0.68839 1.90502 1.73163 1.33992 1.37896 1.21546 0.92456 0.92838 0.99931 1.22119 0.94016 1.00271 1.04839 1.21679 1.01916 0.90229 0.92277 1.21971 0.92680 1.01263 1.08242 1.18655 0.89296 0.86182 0.91073 1.44880 1.08902 1.02052 1.78452 1.21451 0.95446 0.80435 0.99693 1.18334 0.92151 0.91668 0.92801 1.21661 0.99946 0.98948 0.97237 1.21659 0.99948 0.98936 0.97244 1.21293 0.92952 0.91072 1.50836 0.92591 1.25506 0.95395 1.01735 0.94847 1.69939 1.05507 1.27867 1.50873 0.85747 0.78714 0.80390 0.77873 1.20667 1.21523 1.19435 1.67002 1.40712 0.97002 1.20149 0.88959 0.87451 0.87446 0.83375 0.81104 0.83695 0.76151 0.92856 0.92851 0.95401 0.92360 0.95963 0.95950 0.92364 0.95400 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.59 10.28 71.23 0.73 -2.86 16 2 C 0.42 10.53 7.24 28.14 0.20 10.74 16 3 O -0.48 -13.83 17.06 -2.83 -0.05 -13.88 16 4 C 0.07 1.89 6.73 41.69 0.28 2.17 16 5 C -0.19 -4.59 9.63 22.67 0.22 -4.37 16 6 C -0.04 -0.78 10.16 22.41 0.23 -0.56 16 7 C -0.22 -5.75 9.33 22.60 0.21 -5.54 16 8 C 0.39 12.01 7.65 133.30 1.02 13.03 16 9 N -0.71 -23.59 5.13 -345.03 -1.77 -25.36 16 10 C 0.15 5.58 3.72 86.38 0.32 5.90 16 11 C 0.05 2.23 0.50 -52.92 -0.03 2.20 16 12 C -0.12 -5.27 8.08 71.98 0.58 -4.69 16 13 C -0.12 -5.27 8.08 71.99 0.58 -4.68 16 14 C -0.52 -25.77 8.01 25.60 0.21 -25.56 16 15 H 0.06 2.71 7.74 -2.91 -0.02 2.68 16 16 C 0.02 1.25 5.15 84.66 0.44 1.69 16 17 N -0.90 -47.54 9.35 21.45 0.20 -47.34 16 18 Si 0.95 40.85 29.54 68.60 2.03 42.88 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 N -0.53 -15.91 9.19 -182.64 -1.68 -17.59 16 23 H 0.09 1.91 7.07 -2.39 -0.02 1.90 16 24 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.15 3.20 7.63 -2.91 -0.02 3.18 16 27 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.15 3.61 6.69 -2.91 -0.02 3.59 16 29 H 0.40 13.60 6.29 -92.70 -0.58 13.02 16 30 H 0.05 1.91 7.92 -2.39 -0.02 1.89 16 31 H 0.05 1.91 7.92 -2.38 -0.02 1.89 16 32 H 0.03 1.07 6.86 -2.38 -0.02 1.06 16 33 H 0.06 2.89 6.07 -2.39 -0.01 2.87 16 34 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 2.89 6.07 -2.39 -0.01 2.87 16 37 H 0.03 1.07 6.86 -2.39 -0.02 1.06 16 38 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -55.77 312.20 4.21 -51.56 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.49 Total: 22.27 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 4.99 Total: -12.54 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -3.25 Total: -90.30 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.05 Total: -13.88 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -55.77 4.21 -51.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865869354.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.121 kcal (2) G-P(sol) polarization free energy of solvation -55.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds