Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46844 * 326.00689 * 3 2 1 5 5 C 1.53006 * 109.46408 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46712 * 180.02562 * 5 4 3 7 7 C 1.36224 * 116.99866 * 180.02562 * 6 5 4 8 8 C 1.40121 * 126.05299 * 89.97405 * 7 6 5 9 9 C 1.50700 * 125.81946 * 0.03691 * 8 7 6 10 10 N 1.30869 * 108.35781 * 180.02562 * 8 7 6 11 11 N 1.40083 * 108.32531 * 359.97438 * 10 8 7 12 12 C 1.46491 * 126.08156 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.46957 * 90.02662 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.35591 * 126.05186 * 270.28176 * 7 6 5 22 22 C 1.50697 * 126.21235 * 0.03994 * 21 7 6 23 23 H 4.44638 * 5.63403 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.46766 * 206.00694 * 3 2 1 25 25 H 1.08993 * 109.47064 * 86.01049 * 3 2 1 26 26 H 1.09001 * 109.47436 * 60.00414 * 4 3 2 27 27 H 1.08998 * 109.47633 * 299.99563 * 4 3 2 28 28 H 1.08996 * 109.47475 * 60.00309 * 5 4 3 29 29 H 1.08995 * 109.47437 * 299.99688 * 5 4 3 30 30 H 1.08997 * 109.47004 * 269.98215 * 9 8 7 31 31 H 1.08994 * 109.47005 * 29.98402 * 9 8 7 32 32 H 1.08997 * 109.46926 * 149.98293 * 9 8 7 33 33 H 1.09004 * 109.47166 * 330.02928 * 12 11 10 34 34 H 1.08994 * 109.47507 * 210.02634 * 12 11 10 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47147 * 270.14673 * 22 21 7 37 37 H 1.09007 * 109.46816 * 30.14648 * 22 21 7 38 38 H 1.09002 * 109.47380 * 150.13765 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1951 0.8065 5 6 4.6865 -1.1940 0.8070 6 8 5.1634 -2.3111 1.5597 7 6 6.5140 -2.4579 1.6603 8 6 7.3304 -1.9137 2.6607 9 6 6.8640 -1.0635 3.8142 10 7 8.5670 -2.2699 2.4226 11 7 8.5837 -3.0545 1.2622 12 6 9.7678 -3.6572 0.6452 13 6 9.9891 -5.0323 1.2205 14 1 9.3149 -5.4189 1.9705 15 6 11.0488 -5.7995 0.7850 16 7 11.8696 -5.3289 -0.1285 17 14 11.3187 -7.5070 1.4925 18 1 10.5828 -8.5040 0.6741 19 1 12.7689 -7.8264 1.4756 20 1 10.8190 -7.5484 2.8903 21 6 7.3070 -3.1517 0.8070 22 6 6.8545 -3.8973 -0.4220 23 1 -1.0498 -0.0002 0.0004 24 1 3.0089 0.9245 0.4506 25 1 3.0094 -0.0707 -1.0251 26 1 2.7936 -2.1189 0.3559 27 1 2.7932 -1.1237 1.8317 28 1 5.0491 -0.2702 1.2578 29 1 5.0503 -1.2651 -0.2180 30 1 6.8855 -0.0132 3.5234 31 1 5.8463 -1.3448 4.0846 32 1 7.5228 -1.2175 4.6687 33 1 10.6393 -3.0343 0.8469 34 1 9.6173 -3.7338 -0.4316 35 1 12.6153 -5.8684 -0.4347 36 1 6.6081 -4.9246 -0.1535 37 1 5.9734 -3.4094 -0.8390 38 1 7.6545 -3.8971 -1.1623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902910665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = 65.972210 kcal Electronic energy + Delta-G solvation = -18942.766362 eV Core-core repulsion = 15981.265071 eV Total energy + Delta-G solvation = -2961.501291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63159 -37.69269 -35.39145 -33.93016 -32.52196 -31.91372 -30.50127 -29.01122 -27.10834 -25.93166 -25.51075 -22.66614 -21.87888 -19.77031 -19.03462 -18.31362 -16.84481 -16.65596 -15.89116 -15.32780 -15.02904 -14.41139 -14.20598 -13.99841 -13.29684 -13.11059 -13.03422 -12.90405 -12.63196 -12.47157 -12.01178 -11.93688 -11.72683 -11.57117 -11.28381 -11.11128 -10.99369 -10.84737 -10.46230 -10.34533 -10.29481 -10.22469 -9.76435 -9.18657 -8.67152 -8.28076 -7.52595 -6.29224 -4.36825 2.49894 2.61963 2.63950 3.02580 3.19872 3.26435 3.30800 3.43882 4.04260 4.27569 4.40911 4.85881 5.04585 5.07000 5.16102 5.26943 5.36925 5.41046 5.49713 5.59314 5.65763 5.81007 5.83442 5.91919 6.00125 6.00488 6.07608 6.15702 6.27924 6.34930 6.60822 6.84497 6.96390 7.16112 7.41158 7.61835 7.83214 7.86021 8.13614 8.52545 8.70169 9.29782 10.78380 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031165 B = 0.003785 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.240708 B = 7396.502856 C = 7808.257370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.181 4.181 3 C -0.011 4.011 4 C -0.111 4.111 5 C 0.057 3.943 6 O -0.299 6.299 7 C -0.087 4.087 8 C 0.037 3.963 9 C -0.063 4.063 10 N -0.283 5.283 11 N -0.321 5.321 12 C 0.259 3.741 13 C -0.537 4.537 14 H 0.065 0.935 15 C 0.066 3.934 16 N -0.892 5.892 17 Si 0.907 3.093 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.271 1.271 21 C 0.078 3.922 22 C -0.081 4.081 23 H 0.216 0.784 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.268 0.732 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 8.989 -0.763 18.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.181 4.181 3 C -0.048 4.048 4 C -0.149 4.149 5 C -0.019 4.019 6 O -0.213 6.213 7 C -0.143 4.143 8 C -0.128 4.128 9 C -0.121 4.121 10 N -0.108 5.108 11 N -0.103 5.103 12 C 0.142 3.858 13 C -0.576 4.576 14 H 0.083 0.917 15 C -0.137 4.137 16 N -0.530 5.530 17 Si 0.734 3.266 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.054 4.054 22 C -0.139 4.139 23 H 0.233 0.767 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.641 8.834 -0.469 17.106 hybrid contribution -0.556 -0.869 -0.121 1.039 sum -15.196 7.965 -0.590 17.167 Atomic orbital electron populations 1.24881 0.95962 1.01042 1.01308 1.23082 0.94499 1.00301 1.00204 1.18629 0.84769 0.99561 1.01822 1.21411 0.94076 0.98100 1.01297 1.22684 0.93444 0.90099 0.95661 1.86154 1.16725 1.46172 1.72221 1.17788 0.84157 1.12155 1.00168 1.22419 0.91042 1.00695 0.98638 1.20010 1.01098 0.97083 0.93960 1.77330 1.18986 1.12525 1.01991 1.49307 1.06706 1.36169 1.18087 1.19724 0.79579 0.93521 0.93006 1.21311 1.12974 0.99153 1.24155 0.91692 1.24928 0.95074 0.98996 0.94748 1.69919 1.15863 1.37901 1.29271 0.86336 0.77518 0.83070 0.79694 1.20266 1.20820 1.19615 1.21217 0.86211 1.00359 0.97563 1.20299 1.01104 0.99698 0.92813 0.76715 0.89315 0.89296 0.90700 0.90718 0.93372 0.93450 0.91589 0.90889 0.91320 0.92743 0.92881 0.92200 0.90157 0.91031 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.18 -1.80 13.34 -37.12 -0.50 -2.30 16 3 C -0.01 -0.10 5.70 -29.52 -0.17 -0.26 16 4 C -0.11 -1.14 5.54 -26.73 -0.15 -1.29 16 5 C 0.06 0.72 6.07 37.16 0.23 0.94 16 6 O -0.30 -5.00 10.17 -20.46 -0.21 -5.21 16 7 C -0.09 -1.70 6.15 -39.82 -0.24 -1.94 16 8 C 0.04 0.74 7.22 -82.30 -0.59 0.15 16 9 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 10 N -0.28 -6.58 12.57 33.73 0.42 -6.15 16 11 N -0.32 -7.56 3.62 -58.03 -0.21 -7.77 16 12 C 0.26 6.61 6.02 -5.20 -0.03 6.58 16 13 C -0.54 -14.81 9.39 -34.44 -0.32 -15.14 16 14 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 17 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.08 1.61 6.97 -81.74 -0.57 1.04 16 22 C -0.08 -1.37 10.10 36.00 0.36 -1.01 16 23 H 0.22 1.17 7.80 -54.10 -0.42 0.75 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.05 1.33 7.08 -51.93 -0.37 0.96 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.07 1.25 7.11 -51.93 -0.37 0.88 16 LS Contribution 337.97 15.07 5.09 5.09 Total: -1.00 -31.02 337.97 -6.10 -37.12 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.78 Total: -1.50 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -1.14 Total: -13.43 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.95 Total: -38.15 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.21 Total: -5.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.02 -6.10 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902910665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.089 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds