Wall clock time and date at job start Mon Mar 30 2020 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.52997 * 109.46844 * 326.00689 * 3 2 1 5 5 C 1.53006 * 109.46408 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.46712 * 180.02562 * 5 4 3 7 7 C 1.36224 * 116.99866 * 180.02562 * 6 5 4 8 8 C 1.40121 * 126.05299 * 89.97405 * 7 6 5 9 9 C 1.50700 * 125.81946 * 0.03691 * 8 7 6 10 10 N 1.30869 * 108.35781 * 180.02562 * 8 7 6 11 11 N 1.40083 * 108.32531 * 359.97438 * 10 8 7 12 12 C 1.46491 * 126.08156 * 179.97438 * 11 10 8 13 13 C 1.50702 * 109.46957 * 90.02662 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.35591 * 126.05186 * 270.28176 * 7 6 5 22 22 C 1.50697 * 126.21235 * 0.03994 * 21 7 6 23 23 H 4.44638 * 5.63403 * 179.97438 * 4 1 2 24 24 H 1.09001 * 109.46766 * 206.00694 * 3 2 1 25 25 H 1.08993 * 109.47064 * 86.01049 * 3 2 1 26 26 H 1.09001 * 109.47436 * 60.00414 * 4 3 2 27 27 H 1.08998 * 109.47633 * 299.99563 * 4 3 2 28 28 H 1.08996 * 109.47475 * 60.00309 * 5 4 3 29 29 H 1.08995 * 109.47437 * 299.99688 * 5 4 3 30 30 H 1.08997 * 109.47004 * 269.98215 * 9 8 7 31 31 H 1.08994 * 109.47005 * 29.98402 * 9 8 7 32 32 H 1.08997 * 109.46926 * 149.98293 * 9 8 7 33 33 H 1.09004 * 109.47166 * 330.02928 * 12 11 10 34 34 H 1.08994 * 109.47507 * 210.02634 * 12 11 10 35 35 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.47147 * 270.14673 * 22 21 7 37 37 H 1.09007 * 109.46816 * 30.14648 * 22 21 7 38 38 H 1.09002 * 109.47380 * 150.13765 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1951 0.8065 5 6 4.6865 -1.1940 0.8070 6 8 5.1634 -2.3111 1.5597 7 6 6.5140 -2.4579 1.6603 8 6 7.3304 -1.9137 2.6607 9 6 6.8640 -1.0635 3.8142 10 7 8.5670 -2.2699 2.4226 11 7 8.5837 -3.0545 1.2622 12 6 9.7678 -3.6572 0.6452 13 6 9.9891 -5.0323 1.2205 14 1 9.3149 -5.4189 1.9705 15 6 11.0488 -5.7995 0.7850 16 7 11.8696 -5.3289 -0.1285 17 14 11.3187 -7.5070 1.4925 18 1 10.5828 -8.5040 0.6741 19 1 12.7689 -7.8264 1.4756 20 1 10.8190 -7.5484 2.8903 21 6 7.3070 -3.1517 0.8070 22 6 6.8545 -3.8973 -0.4220 23 1 -1.0498 -0.0002 0.0004 24 1 3.0089 0.9245 0.4506 25 1 3.0094 -0.0707 -1.0251 26 1 2.7936 -2.1189 0.3559 27 1 2.7932 -1.1237 1.8317 28 1 5.0491 -0.2702 1.2578 29 1 5.0503 -1.2651 -0.2180 30 1 6.8855 -0.0132 3.5234 31 1 5.8463 -1.3448 4.0846 32 1 7.5228 -1.2175 4.6687 33 1 10.6393 -3.0343 0.8469 34 1 9.6173 -3.7338 -0.4316 35 1 12.6153 -5.8684 -0.4347 36 1 6.6081 -4.9246 -0.1535 37 1 5.9734 -3.4094 -0.8390 38 1 7.6545 -3.8971 -1.1623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902910665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:24 Heat of formation + Delta-G solvation = 48.409795 kcal Electronic energy + Delta-G solvation = -18943.527926 eV Core-core repulsion = 15981.265071 eV Total energy + Delta-G solvation = -2962.262854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.20495 -38.96149 -36.26178 -35.75647 -34.27451 -32.83763 -31.97385 -30.58402 -28.22717 -27.67067 -26.83435 -24.51606 -22.77907 -21.26167 -20.60958 -19.04102 -18.84652 -18.13513 -17.06563 -16.70604 -16.48620 -16.09038 -15.45471 -15.10768 -14.59012 -14.55015 -14.22504 -14.05553 -14.01458 -13.78487 -13.50529 -13.33536 -13.23734 -12.97762 -12.82456 -12.68387 -12.40525 -12.32226 -12.10737 -11.73954 -11.66253 -11.14917 -10.95952 -10.76522 -10.52040 -9.95807 -9.11871 -8.36188 -6.53744 0.94846 1.36250 1.37299 1.47069 1.52627 1.76930 1.91446 1.95963 2.32671 2.91569 2.96813 3.58638 3.77696 3.90565 4.03867 4.17700 4.27036 4.44317 4.50132 4.58374 4.60100 4.65571 4.71553 4.79229 4.80318 4.84721 4.95149 4.97812 5.08760 5.21206 5.21569 5.25570 5.33337 5.50315 5.62818 5.77325 6.11744 6.56250 6.73182 6.76784 6.92251 7.17415 8.70243 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.031165 B = 0.003785 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.240708 B = 7396.502856 C = 7808.257370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.217 4.217 3 C -0.007 4.007 4 C -0.100 4.100 5 C 0.054 3.946 6 O -0.306 6.306 7 C -0.081 4.081 8 C 0.039 3.961 9 C -0.060 4.060 10 N -0.330 5.330 11 N -0.349 5.349 12 C 0.276 3.724 13 C -0.556 4.556 14 H 0.048 0.952 15 C 0.024 3.976 16 N -0.917 5.917 17 Si 0.971 3.029 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.276 1.276 21 C 0.063 3.937 22 C -0.077 4.077 23 H 0.243 0.757 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.026 0.974 34 H 0.051 0.949 35 H 0.274 0.726 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.968 9.148 -0.657 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.217 4.217 3 C -0.044 4.044 4 C -0.138 4.138 5 C -0.021 4.021 6 O -0.220 6.220 7 C -0.136 4.136 8 C -0.127 4.127 9 C -0.119 4.119 10 N -0.155 5.155 11 N -0.131 5.131 12 C 0.158 3.842 13 C -0.594 4.594 14 H 0.066 0.934 15 C -0.178 4.178 16 N -0.555 5.555 17 Si 0.795 3.205 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.201 1.201 21 C -0.067 4.067 22 C -0.135 4.135 23 H 0.259 0.741 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.599 9.008 -0.375 18.890 hybrid contribution -0.113 -0.815 -0.141 0.835 sum -16.712 8.193 -0.516 18.619 Atomic orbital electron populations 1.25693 0.96950 0.99842 1.00197 1.23532 0.95366 1.01454 1.01312 1.18614 0.84390 0.99196 1.02187 1.21317 0.92172 0.98768 1.01531 1.22908 0.94785 0.88975 0.95475 1.86116 1.14836 1.48073 1.73009 1.17827 0.85130 1.11171 0.99482 1.23229 0.90122 0.99853 0.99467 1.20190 1.01842 0.97600 0.92237 1.77257 1.21215 1.14177 1.02816 1.49047 1.07073 1.37863 1.19126 1.19235 0.79831 0.92292 0.92862 1.21429 1.13310 1.00383 1.24270 0.93378 1.25735 0.94494 1.02679 0.94861 1.69997 1.16213 1.39374 1.29961 0.85351 0.77904 0.78587 0.78644 1.18857 1.19763 1.20113 1.21842 0.85370 1.00722 0.98796 1.20391 1.02065 0.99640 0.91438 0.74104 0.88087 0.88326 0.91220 0.90909 0.92364 0.92859 0.89098 0.89123 0.90972 0.95621 0.93123 0.91649 0.90123 0.87955 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.26 19.25 74.32 1.43 -1.83 16 2 C -0.22 -3.89 13.34 31.13 0.42 -3.47 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.05 16 4 C -0.10 -1.84 5.54 30.60 0.17 -1.67 16 5 C 0.05 1.23 6.07 71.98 0.44 1.67 16 6 O -0.31 -9.68 10.17 -96.11 -0.98 -10.66 16 7 C -0.08 -3.07 6.15 22.11 0.14 -2.93 16 8 C 0.04 1.53 7.22 43.16 0.31 1.84 16 9 C -0.06 -1.68 10.44 71.24 0.74 -0.93 16 10 N -0.33 -15.65 12.57 -47.21 -0.59 -16.25 16 11 N -0.35 -16.93 3.62 -337.50 -1.22 -18.16 16 12 C 0.28 14.73 6.02 85.64 0.52 15.24 16 13 C -0.56 -31.52 9.39 25.60 0.24 -31.28 16 14 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 15 C 0.02 1.29 5.46 84.66 0.46 1.75 16 16 N -0.92 -51.96 13.29 21.45 0.28 -51.68 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.06 2.61 6.97 41.32 0.29 2.89 16 22 C -0.08 -2.59 10.10 71.24 0.72 -1.87 16 23 H 0.24 1.94 7.80 -4.43 -0.03 1.90 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.05 2.66 7.08 -2.39 -0.02 2.64 16 35 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 38 H 0.07 2.35 7.11 -2.39 -0.02 2.34 16 Total: -1.00 -67.69 337.97 6.58 -61.11 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.03 Total: 10.80 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 6.03 Total: -20.53 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -1.53 Total: -86.08 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.98 Total: -10.66 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -67.69 6.58 -61.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902910665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.525 kcal (2) G-P(sol) polarization free energy of solvation -67.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds