Wall clock time and date at job start Mon Mar 30 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 H 1.09005 * 109.47327 * 55.00012 * 3 2 1 5 5 N 1.46493 * 109.47389 * 294.99745 * 3 2 1 6 6 C 1.34771 * 120.00494 * 153.50873 * 5 3 2 7 7 O 1.21278 * 119.99776 * 0.02562 * 6 5 3 8 8 C 1.50705 * 120.00334 * 179.97438 * 6 5 3 9 9 H 1.09001 * 109.46845 * 59.99940 * 8 6 5 10 10 C 1.53000 * 109.46995 * 299.99927 * 8 6 5 11 11 C 1.50698 * 109.47148 * 180.02562 * 8 6 5 12 12 H 1.07999 * 119.99931 * 359.97438 * 11 8 6 13 13 C 1.37878 * 120.00003 * 180.02562 * 11 8 6 14 14 N 1.31519 * 119.99930 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00013 * 179.97438 * 13 11 8 16 16 H 1.48508 * 109.47028 * 60.00058 * 15 13 11 17 17 H 1.48502 * 109.46986 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47617 * 300.00348 * 15 13 11 19 19 C 1.50701 * 109.47086 * 174.99519 * 3 2 1 20 20 C 1.38230 * 119.62297 * 237.20980 * 19 3 2 21 21 C 1.38624 * 119.16258 * 179.97438 * 20 19 3 22 22 C 1.38671 * 118.42437 * 0.02562 * 21 20 19 23 23 C 1.38186 * 119.16032 * 359.97438 * 22 21 20 24 24 N 1.31862 * 119.61743 * 56.93587 * 19 3 2 25 25 H 1.08997 * 109.46777 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47086 * 300.00328 * 1 2 3 27 27 H 1.09000 * 109.46431 * 60.00085 * 1 2 3 28 28 H 1.08999 * 109.47533 * 239.99459 * 2 1 3 29 29 H 1.09005 * 109.47015 * 119.99527 * 2 1 3 30 30 H 0.97007 * 119.99815 * 333.78330 * 5 3 2 31 31 H 1.08995 * 109.46710 * 179.97438 * 10 8 6 32 32 H 1.08994 * 109.47134 * 299.99397 * 10 8 6 33 33 H 1.08998 * 109.47205 * 60.00117 * 10 8 6 34 34 H 0.96996 * 119.99624 * 180.02562 * 14 13 11 35 35 H 1.07999 * 120.41557 * 0.02562 * 20 19 3 36 36 H 1.08006 * 120.78808 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.42353 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.61514 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6526 2.0975 -1.2518 6 6 1.4965 3.4355 -1.2920 7 8 1.6773 4.0974 -0.2920 8 6 1.0984 4.1094 -2.5799 9 1 0.1346 3.7217 -2.9100 10 6 2.1549 3.8281 -3.6503 11 6 0.9930 5.5961 -2.3573 12 1 1.1938 6.0114 -1.3808 13 6 0.6393 6.4259 -3.4000 14 7 0.3934 5.9199 -4.5888 15 14 0.5080 8.2687 -3.1239 16 1 1.8213 8.7968 -2.6747 17 1 0.1159 8.9327 -4.3930 18 1 -0.5169 8.5418 -2.0845 19 6 3.5420 1.4443 0.1240 20 6 4.1406 2.1250 1.1675 21 6 5.5228 2.1199 1.2727 22 6 6.2548 1.4277 0.3197 23 6 5.5867 0.7702 -0.6956 24 7 4.2697 0.7920 -0.7613 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.5045 1.5676 -2.0507 31 1 1.8667 4.3151 -4.5819 32 1 3.1186 4.2158 -3.3203 33 1 2.2316 2.7529 -3.8115 34 1 0.1450 6.5038 -5.3224 35 1 3.5390 2.6533 1.8922 36 1 6.0179 2.6426 2.0778 37 1 7.3332 1.4021 0.3709 38 1 6.1495 0.2292 -1.4419 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910344440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:42 Heat of formation + Delta-G solvation = -18.593017 kcal Electronic energy + Delta-G solvation = -19823.651469 eV Core-core repulsion = 16858.483155 eV Total energy + Delta-G solvation = -2965.168314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.27313 -38.65035 -35.72419 -33.67041 -32.28681 -31.84421 -31.19297 -30.07076 -26.34209 -25.07349 -23.51077 -22.70095 -22.51555 -20.53661 -19.33404 -16.98980 -16.42266 -16.00606 -15.88540 -15.52520 -15.17996 -14.42107 -14.16837 -13.84913 -13.54486 -13.38649 -13.07838 -12.88461 -12.48596 -12.17147 -12.00093 -11.55115 -11.24158 -11.13084 -10.95523 -10.84046 -10.68578 -10.61059 -10.20671 -9.92352 -9.76833 -9.39084 -8.97582 -8.92834 -8.51598 -8.40087 -8.25664 -5.98743 -4.01649 1.20146 1.39704 3.38275 3.40586 3.45956 3.71246 3.82491 4.14491 4.42985 4.51327 4.74701 4.90327 5.08795 5.15742 5.22030 5.29712 5.34425 5.39126 5.70209 5.73977 5.82446 5.88069 5.99492 6.14456 6.18050 6.27006 6.36677 6.44132 6.70195 6.80002 6.91304 6.99844 7.15180 7.54088 7.81418 8.03791 8.12678 8.21936 8.52158 9.06667 9.30427 9.63474 11.08864 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.005692 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.064025 B = 4917.908823 C = 5466.400409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.195 3.805 4 H 0.097 0.903 5 N -0.729 5.729 6 C 0.521 3.479 7 O -0.547 6.547 8 C 0.030 3.970 9 H 0.052 0.948 10 C -0.130 4.130 11 C -0.499 4.499 12 H 0.073 0.927 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.276 1.276 19 C 0.124 3.876 20 C -0.151 4.151 21 C -0.079 4.079 22 C -0.180 4.180 23 C 0.095 3.905 24 N -0.470 5.470 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.399 0.601 31 H 0.092 0.908 32 H 0.027 0.973 33 H 0.013 0.987 34 H 0.261 0.739 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.872 -13.072 8.268 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C 0.088 3.912 4 H 0.115 0.885 5 N -0.382 5.382 6 C 0.311 3.689 7 O -0.423 6.423 8 C 0.009 3.991 9 H 0.070 0.930 10 C -0.188 4.188 11 C -0.538 4.538 12 H 0.091 0.909 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.728 3.272 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.015 4.015 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.200 4.200 23 C -0.063 4.063 24 N -0.179 5.179 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.233 0.767 31 H 0.110 0.890 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.503 -12.948 8.133 16.616 hybrid contribution 0.551 1.259 0.369 1.423 sum 7.054 -11.688 8.502 16.083 Atomic orbital electron populations 1.21770 0.95042 1.01392 1.02688 1.21706 0.96317 0.94799 1.03074 1.19734 0.86899 0.94165 0.90367 0.88496 1.46273 1.72094 1.08259 1.11618 1.22003 0.74105 0.80345 0.92483 1.90506 1.50517 1.64016 1.37275 1.18853 0.96386 0.96353 0.87471 0.93041 1.21708 0.97719 0.96677 1.02670 1.21105 1.45715 0.89933 0.97049 0.90916 1.24948 0.95265 0.98994 0.95061 1.69869 1.47646 1.35144 1.00979 0.86525 0.78618 0.84921 0.77163 1.20300 1.21384 1.20202 1.21784 0.97250 0.92291 0.90173 1.22026 0.95438 0.99770 0.99948 1.21551 0.94021 0.96605 0.98289 1.22083 1.01098 1.00061 0.96803 1.22709 0.90371 0.96631 0.96578 1.67430 1.07178 1.17823 1.25492 0.92728 0.92699 0.91930 0.90524 0.91336 0.76659 0.88954 0.95333 0.96814 0.92964 0.84748 0.85094 0.85194 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.80 37.16 0.36 -1.37 16 2 C -0.12 -1.47 5.31 -26.73 -0.14 -1.61 16 3 C 0.19 3.03 2.30 -69.09 -0.16 2.87 16 4 H 0.10 1.60 7.25 -51.93 -0.38 1.22 16 5 N -0.73 -13.17 4.39 -54.94 -0.24 -13.41 16 6 C 0.52 12.03 7.12 -10.99 -0.08 11.95 16 7 O -0.55 -14.18 15.10 5.56 0.08 -14.09 16 8 C 0.03 0.77 2.64 -92.92 -0.25 0.53 16 9 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 10 C -0.13 -3.12 8.87 37.16 0.33 -2.79 16 11 C -0.50 -14.42 8.37 -34.44 -0.29 -14.71 16 12 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 13 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 14 N -0.90 -25.59 11.32 55.43 0.63 -24.96 16 15 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.12 1.97 5.71 -82.58 -0.47 1.49 16 20 C -0.15 -2.23 9.71 -39.44 -0.38 -2.62 16 21 C -0.08 -0.98 10.18 -39.28 -0.40 -1.38 16 22 C -0.18 -2.10 10.11 -39.44 -0.40 -2.50 16 23 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 24 N -0.47 -7.26 10.03 -9.47 -0.10 -7.36 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 28 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.40 6.58 8.04 -40.82 -0.33 6.26 16 31 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.13 1.89 7.94 -52.49 -0.42 1.47 16 36 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 37 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 321.00 15.07 4.84 4.84 Total: -1.00 -32.32 321.00 -7.50 -39.81 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.53 Total: 5.58 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.16 Total: -7.55 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.29 Total: -45.73 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.32 -7.50 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910344440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.220 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds