Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 H 1.09005 * 109.47327 * 55.00012 * 3 2 1 5 5 N 1.46493 * 109.47389 * 294.99745 * 3 2 1 6 6 C 1.34771 * 120.00494 * 153.50873 * 5 3 2 7 7 O 1.21278 * 119.99776 * 0.02562 * 6 5 3 8 8 C 1.50705 * 120.00334 * 179.97438 * 6 5 3 9 9 H 1.09001 * 109.46845 * 59.99940 * 8 6 5 10 10 C 1.53000 * 109.46995 * 299.99927 * 8 6 5 11 11 C 1.50698 * 109.47148 * 180.02562 * 8 6 5 12 12 H 1.07999 * 119.99931 * 359.97438 * 11 8 6 13 13 C 1.37878 * 120.00003 * 180.02562 * 11 8 6 14 14 N 1.31519 * 119.99930 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00013 * 179.97438 * 13 11 8 16 16 H 1.48508 * 109.47028 * 60.00058 * 15 13 11 17 17 H 1.48502 * 109.46986 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47617 * 300.00348 * 15 13 11 19 19 C 1.50701 * 109.47086 * 174.99519 * 3 2 1 20 20 C 1.38230 * 119.62297 * 237.20980 * 19 3 2 21 21 C 1.38624 * 119.16258 * 179.97438 * 20 19 3 22 22 C 1.38671 * 118.42437 * 0.02562 * 21 20 19 23 23 C 1.38186 * 119.16032 * 359.97438 * 22 21 20 24 24 N 1.31862 * 119.61743 * 56.93587 * 19 3 2 25 25 H 1.08997 * 109.46777 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47086 * 300.00328 * 1 2 3 27 27 H 1.09000 * 109.46431 * 60.00085 * 1 2 3 28 28 H 1.08999 * 109.47533 * 239.99459 * 2 1 3 29 29 H 1.09005 * 109.47015 * 119.99527 * 2 1 3 30 30 H 0.97007 * 119.99815 * 333.78330 * 5 3 2 31 31 H 1.08995 * 109.46710 * 179.97438 * 10 8 6 32 32 H 1.08994 * 109.47134 * 299.99397 * 10 8 6 33 33 H 1.08998 * 109.47205 * 60.00117 * 10 8 6 34 34 H 0.96996 * 119.99624 * 180.02562 * 14 13 11 35 35 H 1.07999 * 120.41557 * 0.02562 * 20 19 3 36 36 H 1.08006 * 120.78808 * 180.02562 * 21 20 19 37 37 H 1.07997 * 120.42353 * 180.02562 * 22 21 20 38 38 H 1.07998 * 119.61514 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6526 2.0975 -1.2518 6 6 1.4965 3.4355 -1.2920 7 8 1.6773 4.0974 -0.2920 8 6 1.0984 4.1094 -2.5799 9 1 0.1346 3.7217 -2.9100 10 6 2.1549 3.8281 -3.6503 11 6 0.9930 5.5961 -2.3573 12 1 1.1938 6.0114 -1.3808 13 6 0.6393 6.4259 -3.4000 14 7 0.3934 5.9199 -4.5888 15 14 0.5080 8.2687 -3.1239 16 1 1.8213 8.7968 -2.6747 17 1 0.1159 8.9327 -4.3930 18 1 -0.5169 8.5418 -2.0845 19 6 3.5420 1.4443 0.1240 20 6 4.1406 2.1250 1.1675 21 6 5.5228 2.1199 1.2727 22 6 6.2548 1.4277 0.3197 23 6 5.5867 0.7702 -0.6956 24 7 4.2697 0.7920 -0.7613 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8935 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.5045 1.5676 -2.0507 31 1 1.8667 4.3151 -4.5819 32 1 3.1186 4.2158 -3.3203 33 1 2.2316 2.7529 -3.8115 34 1 0.1450 6.5038 -5.3224 35 1 3.5390 2.6533 1.8922 36 1 6.0179 2.6426 2.0778 37 1 7.3332 1.4021 0.3709 38 1 6.1495 0.2292 -1.4419 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910344440.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = -39.158167 kcal Electronic energy + Delta-G solvation = -19824.543241 eV Core-core repulsion = 16858.483155 eV Total energy + Delta-G solvation = -2966.060086 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.43954 -40.26308 -37.09028 -35.74998 -33.47461 -33.28982 -32.26433 -31.88877 -27.55258 -27.17821 -24.57417 -24.44112 -23.56782 -21.79038 -21.08160 -18.39864 -18.08061 -17.59820 -17.40332 -16.59824 -16.57159 -16.27706 -15.67225 -14.99170 -14.90314 -14.76157 -14.39618 -14.35399 -14.01955 -13.47952 -13.38666 -12.98521 -12.95395 -12.72270 -12.61193 -12.39381 -12.19880 -12.13906 -11.97653 -11.83629 -11.05986 -10.80219 -10.62570 -10.52512 -10.30887 -9.93742 -9.85021 -8.14977 -6.25479 0.16259 0.38722 1.40007 1.41742 1.50293 1.94560 2.34923 2.52082 2.95779 3.14289 3.35680 3.68336 3.99313 4.07497 4.16946 4.25548 4.30908 4.33017 4.47450 4.67637 4.71717 4.74716 4.85300 4.88438 4.94118 5.00568 5.08019 5.17365 5.25612 5.28874 5.42414 5.48217 5.63530 5.73967 5.81253 5.92435 6.20538 6.74479 6.86922 7.07370 7.39892 7.56272 8.90898 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020827 B = 0.005692 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.064025 B = 4917.908823 C = 5466.400409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C 0.193 3.807 4 H 0.082 0.918 5 N -0.709 5.709 6 C 0.524 3.476 7 O -0.582 6.582 8 C 0.025 3.975 9 H 0.041 0.959 10 C -0.114 4.114 11 C -0.528 4.528 12 H 0.049 0.951 13 C 0.019 3.981 14 N -0.912 5.912 15 Si 0.956 3.044 16 H -0.278 1.278 17 H -0.274 1.274 18 H -0.275 1.275 19 C 0.100 3.900 20 C -0.174 4.174 21 C -0.082 4.082 22 C -0.171 4.171 23 C 0.082 3.918 24 N -0.490 5.490 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.408 0.592 31 H 0.071 0.929 32 H 0.014 0.986 33 H 0.046 0.954 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -14.066 8.372 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C 0.087 3.913 4 H 0.100 0.900 5 N -0.362 5.362 6 C 0.313 3.687 7 O -0.462 6.462 8 C 0.004 3.996 9 H 0.059 0.941 10 C -0.172 4.172 11 C -0.566 4.566 12 H 0.067 0.933 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.781 3.219 16 H -0.203 1.203 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.039 4.039 20 C -0.195 4.195 21 C -0.108 4.108 22 C -0.191 4.191 23 C -0.075 4.075 24 N -0.200 5.200 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.244 0.756 31 H 0.090 0.910 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.802 -13.994 8.225 18.010 hybrid contribution 0.219 1.498 0.350 1.554 sum 8.021 -12.496 8.575 17.147 Atomic orbital electron populations 1.21767 0.94470 1.02653 1.01825 1.21644 0.96638 0.92430 1.03953 1.19906 0.87675 0.95580 0.88120 0.90013 1.45996 1.70389 1.06612 1.13160 1.21501 0.74265 0.81859 0.91108 1.90482 1.52454 1.65252 1.37983 1.18784 0.96354 0.95191 0.89256 0.94109 1.21496 0.96278 0.98479 1.00930 1.21250 1.46954 0.92097 0.96349 0.93291 1.25616 0.94705 1.02914 0.94812 1.69949 1.47349 1.36459 1.01322 0.85651 0.78450 0.80193 0.77575 1.20318 1.19854 1.20006 1.21706 0.97069 0.93781 0.91300 1.22177 0.96886 1.00285 1.00143 1.21943 0.93163 0.96430 0.99239 1.22506 1.02931 0.98226 0.95409 1.23308 0.89816 0.96784 0.97618 1.67398 1.08543 1.18359 1.25699 0.90400 0.93036 0.93327 0.90211 0.89710 0.75635 0.91003 0.96660 0.93532 0.92594 0.85286 0.82381 0.81508 0.80269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.80 71.98 0.71 -2.55 16 2 C -0.11 -2.52 5.31 30.60 0.16 -2.36 16 3 C 0.19 6.00 2.30 44.25 0.10 6.11 16 4 H 0.08 2.78 7.25 -2.38 -0.02 2.77 16 5 N -0.71 -25.75 4.39 -446.11 -1.96 -27.71 16 6 C 0.52 24.76 7.12 87.66 0.62 25.38 16 7 O -0.58 -31.25 15.10 -3.02 -0.05 -31.29 16 8 C 0.03 1.32 2.64 -12.29 -0.03 1.28 16 9 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 10 C -0.11 -5.49 8.87 71.98 0.64 -4.85 16 11 C -0.53 -31.27 8.37 25.60 0.21 -31.06 16 12 H 0.05 3.08 6.75 -2.91 -0.02 3.06 16 13 C 0.02 1.06 5.30 84.65 0.45 1.51 16 14 N -0.91 -52.18 11.32 21.45 0.24 -51.93 16 15 Si 0.96 45.65 29.54 68.60 2.03 47.68 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 19 C 0.10 3.11 5.71 42.55 0.24 3.36 16 20 C -0.17 -5.10 9.71 22.36 0.22 -4.88 16 21 C -0.08 -1.88 10.18 22.47 0.23 -1.66 16 22 C -0.17 -3.46 10.11 22.36 0.23 -3.24 16 23 C 0.08 1.92 11.18 84.67 0.95 2.87 16 24 N -0.49 -14.47 10.03 -183.88 -1.85 -16.32 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.18 7.75 -2.39 -0.02 1.16 16 28 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 29 H 0.08 1.72 8.14 -2.38 -0.02 1.71 16 30 H 0.41 13.25 8.04 -92.70 -0.75 12.50 16 31 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 32 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 1.88 7.57 -2.39 -0.02 1.86 16 34 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 35 H 0.13 3.75 7.94 -2.91 -0.02 3.73 16 36 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -70.58 321.00 3.45 -67.13 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.31 Total: 22.54 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.72 Total: -10.09 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -3.56 Total: -95.97 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.05 Total: -31.29 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.58 3.45 -67.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910344440.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.968 kcal (2) G-P(sol) polarization free energy of solvation -70.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds