Wall clock time and date at job start Mon Mar 30 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46703 * 2 1 4 4 H 1.08997 * 109.47289 * 305.00137 * 3 2 1 5 5 N 1.46502 * 109.46916 * 65.00619 * 3 2 1 6 6 C 1.34779 * 119.99472 * 274.99342 * 5 3 2 7 7 O 1.21279 * 120.00296 * 0.02562 * 6 5 3 8 8 C 1.50705 * 119.99588 * 180.02562 * 6 5 3 9 9 H 1.08992 * 109.47157 * 60.00639 * 8 6 5 10 10 C 1.53003 * 109.47198 * 299.99938 * 8 6 5 11 11 C 1.50700 * 109.46636 * 180.02562 * 8 6 5 12 12 H 1.08007 * 120.00323 * 35.11061 * 11 8 6 13 13 C 1.37875 * 119.99973 * 215.10368 * 11 8 6 14 14 N 1.31515 * 120.00331 * 184.91654 * 13 11 8 15 15 Si 1.86798 * 119.99922 * 4.91185 * 13 11 8 16 16 H 1.48503 * 109.47024 * 84.82040 * 15 13 11 17 17 H 1.48505 * 109.47237 * 204.82524 * 15 13 11 18 18 H 1.48501 * 109.47129 * 324.82122 * 15 13 11 19 19 C 1.50704 * 109.47048 * 185.00093 * 3 2 1 20 20 C 1.38219 * 119.61751 * 124.72950 * 19 3 2 21 21 C 1.38637 * 119.16227 * 179.75750 * 20 19 3 22 22 C 1.38669 * 118.41488 * 0.50684 * 21 20 19 23 23 C 1.38181 * 119.16800 * 359.73458 * 22 21 20 24 24 N 1.31853 * 119.61864 * 305.00209 * 19 3 2 25 25 H 1.08999 * 109.47265 * 60.00151 * 1 2 3 26 26 H 1.08995 * 109.46933 * 299.99334 * 1 2 3 27 27 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47522 * 120.00335 * 2 1 3 29 29 H 1.09004 * 109.47022 * 240.00491 * 2 1 3 30 30 H 0.96996 * 120.00065 * 94.99821 * 5 3 2 31 31 H 1.09002 * 109.47406 * 295.08038 * 10 8 6 32 32 H 1.09008 * 109.46513 * 55.07551 * 10 8 6 33 33 H 1.08994 * 109.46870 * 175.07415 * 10 8 6 34 34 H 0.96993 * 120.00031 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.42278 * 359.97438 * 20 19 3 36 36 H 1.07995 * 120.79034 * 180.26357 * 21 20 19 37 37 H 1.08000 * 120.41689 * 179.71359 * 22 21 20 38 38 H 1.08004 * 119.62037 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4350 2.6644 1.3670 7 8 -0.3397 2.6319 0.4345 8 6 0.0366 3.3385 2.6546 9 1 0.7279 4.1540 2.8668 10 6 0.0806 2.3221 3.7974 11 6 -1.3614 3.8858 2.5233 12 1 -2.0980 3.3517 1.9413 13 6 -1.7002 5.0682 3.1463 14 7 -2.9432 5.4965 3.1128 15 14 -0.3936 6.0618 4.0379 16 1 0.3116 6.9365 3.0668 17 1 -1.0358 6.8992 5.0828 18 1 0.5820 5.1398 4.6729 19 6 3.5418 1.4445 -0.1239 20 6 4.1422 2.1583 -1.1439 21 6 5.5248 2.1576 -1.2460 22 6 6.2545 1.4270 -0.3203 23 6 5.5844 0.7334 0.6693 24 7 4.2677 0.7608 0.7388 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.2719 2.1231 1.9978 31 1 -0.6725 1.5525 3.6284 32 1 1.0680 1.8618 3.8364 33 1 -0.1221 2.8278 4.7414 34 1 -3.1814 6.3285 3.5508 35 1 3.5421 2.7125 -1.8504 36 1 6.0216 2.7097 -2.0300 37 1 7.3329 1.4002 -0.3725 38 1 6.1455 0.1617 1.3937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911143317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:45 Heat of formation + Delta-G solvation = -12.552571 kcal Electronic energy + Delta-G solvation = -19795.488061 eV Core-core repulsion = 16830.581680 eV Total energy + Delta-G solvation = -2964.906381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.53679 -38.94286 -35.49970 -33.59924 -32.56315 -31.98182 -31.28204 -30.76391 -26.43566 -25.19053 -23.75911 -22.71985 -22.56250 -20.41445 -19.28454 -17.22636 -17.04839 -16.46646 -16.04243 -15.42194 -15.20306 -14.73529 -14.22745 -13.88245 -13.64543 -13.30587 -13.17522 -12.99812 -12.43130 -12.18619 -12.11008 -11.96332 -11.37207 -11.19148 -11.12731 -10.98231 -10.72066 -10.50196 -10.17422 -10.05643 -9.78600 -9.60212 -9.24499 -9.12050 -8.61467 -8.46250 -8.36734 -6.03273 -4.01817 0.90027 1.10678 3.26809 3.34004 3.35884 3.53172 3.68280 4.02510 4.13406 4.41582 4.54925 4.65867 4.89216 4.96496 5.25592 5.29421 5.33471 5.44451 5.53739 5.65331 5.88634 5.92305 5.99960 6.11633 6.19284 6.22394 6.28720 6.46051 6.49273 6.56521 6.61278 6.87746 6.89372 7.08732 7.24128 7.60625 7.84349 8.24343 8.59140 9.12736 9.22959 9.57033 11.10083 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.005538 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.424513 B = 5054.955697 C = 5602.544798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.196 3.804 4 H 0.097 0.903 5 N -0.736 5.736 6 C 0.521 3.479 7 O -0.524 6.524 8 C -0.005 4.005 9 H 0.052 0.948 10 C -0.133 4.133 11 C -0.491 4.491 12 H 0.087 0.913 13 C 0.071 3.929 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 C 0.126 3.874 20 C -0.158 4.158 21 C -0.075 4.075 22 C -0.178 4.178 23 C 0.099 3.901 24 N -0.471 5.471 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.397 0.603 31 H 0.052 0.948 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.951 -8.861 -5.870 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.160 4.160 3 C 0.090 3.910 4 H 0.115 0.885 5 N -0.391 5.391 6 C 0.309 3.691 7 O -0.398 6.398 8 C -0.026 4.026 9 H 0.070 0.930 10 C -0.192 4.192 11 C -0.529 4.529 12 H 0.105 0.895 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.697 3.303 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.012 4.012 20 C -0.179 4.179 21 C -0.102 4.102 22 C -0.198 4.198 23 C -0.059 4.059 24 N -0.181 5.181 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.230 0.770 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 17.776 -9.178 -5.835 20.839 hybrid contribution 1.593 1.172 0.132 1.982 sum 19.369 -8.005 -5.703 21.720 Atomic orbital electron populations 1.21830 0.94289 1.00258 1.03960 1.21845 0.97122 0.95114 1.01932 1.19772 0.86216 0.94806 0.90174 0.88502 1.46373 1.18156 1.59582 1.14998 1.21705 0.79516 0.76488 0.91372 1.90583 1.50786 1.57607 1.40816 1.19348 0.99408 0.94916 0.88971 0.93019 1.21945 0.98685 0.99247 0.99276 1.20748 0.93446 1.07241 1.31503 0.89537 1.25014 0.95121 0.97082 0.95790 1.69882 1.17057 1.22180 1.44267 0.86988 0.82542 0.80733 0.80045 1.20230 1.21301 1.18961 1.21470 0.96421 0.92291 0.91055 1.22061 0.95550 1.00322 0.99921 1.21591 0.93891 0.96647 0.98022 1.22147 1.01356 0.99389 0.96862 1.22782 0.90155 0.96369 0.96562 1.67481 1.07359 1.17662 1.25562 0.92294 0.91346 0.93966 0.91122 0.92369 0.76956 0.92899 0.95402 0.92845 0.92612 0.84517 0.84806 0.84917 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.51 37.16 0.32 -2.11 16 2 C -0.12 -1.77 5.42 -26.73 -0.14 -1.91 16 3 C 0.20 2.98 2.57 -69.08 -0.18 2.81 16 4 H 0.10 1.56 7.31 -51.93 -0.38 1.18 16 5 N -0.74 -12.77 4.88 -54.92 -0.27 -13.04 16 6 C 0.52 11.36 5.72 -10.98 -0.06 11.30 16 7 O -0.52 -13.03 12.90 5.56 0.07 -12.96 16 8 C 0.00 -0.11 2.30 -92.92 -0.21 -0.32 16 9 H 0.05 1.20 5.29 -51.93 -0.27 0.92 16 10 C -0.13 -2.73 9.12 37.16 0.34 -2.39 16 11 C -0.49 -14.09 8.36 -34.44 -0.29 -14.38 16 12 H 0.09 2.80 7.61 -52.48 -0.40 2.41 16 13 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 15 Si 0.87 21.19 26.99 -169.99 -4.59 16.60 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.26 -6.00 6.82 56.52 0.39 -5.61 16 19 C 0.13 1.65 5.62 -82.59 -0.46 1.19 16 20 C -0.16 -1.77 9.71 -39.44 -0.38 -2.15 16 21 C -0.08 -0.68 10.18 -39.27 -0.40 -1.08 16 22 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 23 C 0.10 0.98 11.18 -17.55 -0.20 0.79 16 24 N -0.47 -6.03 9.95 -9.47 -0.09 -6.12 16 25 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 26 H 0.07 1.34 5.64 -51.93 -0.29 1.05 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.40 6.35 7.93 -40.82 -0.32 6.02 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.03 0.47 7.43 -51.92 -0.39 0.08 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.14 1.36 7.95 -52.49 -0.42 0.95 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -32.96 314.13 -6.95 -39.91 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.41 Total: 5.98 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -2.17 Total: -8.18 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: 0.41 Total: -46.09 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.59 Total: 16.60 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.96 -6.95 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911143317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.362 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds