Wall clock time and date at job start Mon Mar 30 2020 06:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46703 * 2 1 4 4 H 1.08997 * 109.47289 * 305.00137 * 3 2 1 5 5 N 1.46502 * 109.46916 * 65.00619 * 3 2 1 6 6 C 1.34779 * 119.99472 * 274.99342 * 5 3 2 7 7 O 1.21279 * 120.00296 * 0.02562 * 6 5 3 8 8 C 1.50705 * 119.99588 * 180.02562 * 6 5 3 9 9 H 1.08992 * 109.47157 * 60.00639 * 8 6 5 10 10 C 1.53003 * 109.47198 * 299.99938 * 8 6 5 11 11 C 1.50700 * 109.46636 * 180.02562 * 8 6 5 12 12 H 1.08007 * 120.00323 * 35.11061 * 11 8 6 13 13 C 1.37875 * 119.99973 * 215.10368 * 11 8 6 14 14 N 1.31515 * 120.00331 * 184.91654 * 13 11 8 15 15 Si 1.86798 * 119.99922 * 4.91185 * 13 11 8 16 16 H 1.48503 * 109.47024 * 84.82040 * 15 13 11 17 17 H 1.48505 * 109.47237 * 204.82524 * 15 13 11 18 18 H 1.48501 * 109.47129 * 324.82122 * 15 13 11 19 19 C 1.50704 * 109.47048 * 185.00093 * 3 2 1 20 20 C 1.38219 * 119.61751 * 124.72950 * 19 3 2 21 21 C 1.38637 * 119.16227 * 179.75750 * 20 19 3 22 22 C 1.38669 * 118.41488 * 0.50684 * 21 20 19 23 23 C 1.38181 * 119.16800 * 359.73458 * 22 21 20 24 24 N 1.31853 * 119.61864 * 305.00209 * 19 3 2 25 25 H 1.08999 * 109.47265 * 60.00151 * 1 2 3 26 26 H 1.08995 * 109.46933 * 299.99334 * 1 2 3 27 27 H 1.09001 * 109.46908 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47522 * 120.00335 * 2 1 3 29 29 H 1.09004 * 109.47022 * 240.00491 * 2 1 3 30 30 H 0.96996 * 120.00065 * 94.99821 * 5 3 2 31 31 H 1.09002 * 109.47406 * 295.08038 * 10 8 6 32 32 H 1.09008 * 109.46513 * 55.07551 * 10 8 6 33 33 H 1.08994 * 109.46870 * 175.07415 * 10 8 6 34 34 H 0.96993 * 120.00031 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.42278 * 359.97438 * 20 19 3 36 36 H 1.07995 * 120.79034 * 180.26357 * 21 20 19 37 37 H 1.08000 * 120.41689 * 179.71359 * 22 21 20 38 38 H 1.08004 * 119.62037 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8418 5 7 1.6524 2.0975 1.2519 6 6 0.4350 2.6644 1.3670 7 8 -0.3397 2.6319 0.4345 8 6 0.0366 3.3385 2.6546 9 1 0.7279 4.1540 2.8668 10 6 0.0806 2.3221 3.7974 11 6 -1.3614 3.8858 2.5233 12 1 -2.0980 3.3517 1.9413 13 6 -1.7002 5.0682 3.1463 14 7 -2.9432 5.4965 3.1128 15 14 -0.3936 6.0618 4.0379 16 1 0.3116 6.9365 3.0668 17 1 -1.0358 6.8992 5.0828 18 1 0.5820 5.1398 4.6729 19 6 3.5418 1.4445 -0.1239 20 6 4.1422 2.1583 -1.1439 21 6 5.5248 2.1576 -1.2460 22 6 6.2545 1.4270 -0.3203 23 6 5.5844 0.7334 0.6693 24 7 4.2677 0.7608 0.7388 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.2719 2.1231 1.9978 31 1 -0.6725 1.5525 3.6284 32 1 1.0680 1.8618 3.8364 33 1 -0.1221 2.8278 4.7414 34 1 -3.1814 6.3285 3.5508 35 1 3.5421 2.7125 -1.8504 36 1 6.0216 2.7097 -2.0300 37 1 7.3329 1.4002 -0.3725 38 1 6.1455 0.1617 1.3937 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911143317.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:45 Heat of formation + Delta-G solvation = -35.732223 kcal Electronic energy + Delta-G solvation = -19796.493206 eV Core-core repulsion = 16830.581680 eV Total energy + Delta-G solvation = -2965.911526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.51170 -40.43044 -36.87515 -35.58375 -33.79158 -33.32324 -32.55898 -32.14192 -27.67359 -27.15838 -24.53858 -24.40455 -23.57466 -21.70059 -20.94656 -19.13023 -18.30691 -17.53706 -17.27598 -16.73276 -16.42424 -16.14863 -15.92225 -15.05416 -14.81221 -14.62021 -14.59059 -14.37735 -13.99295 -13.76185 -13.43550 -13.08268 -12.96907 -12.91451 -12.60905 -12.50690 -12.26356 -12.00406 -11.80101 -11.75594 -11.23574 -10.80928 -10.74503 -10.51205 -10.34266 -9.94272 -9.83808 -8.25980 -6.31398 0.11166 0.37976 1.35130 1.37308 1.47674 1.96013 2.35327 2.37952 2.93755 3.12157 3.20926 3.66558 4.02361 4.11336 4.16944 4.23205 4.25986 4.30187 4.41811 4.44350 4.65339 4.71710 4.74904 4.84112 4.87732 4.90989 5.00063 5.12594 5.18332 5.28028 5.28877 5.46450 5.51358 5.59286 5.65832 5.79678 6.27934 6.68727 6.87647 7.04347 7.29842 7.57815 8.91941 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.023575 B = 0.005538 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.424513 B = 5054.955697 C = 5602.544798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.196 3.804 4 H 0.081 0.919 5 N -0.716 5.716 6 C 0.522 3.478 7 O -0.566 6.566 8 C -0.009 4.009 9 H 0.066 0.934 10 C -0.126 4.126 11 C -0.500 4.500 12 H 0.026 0.974 13 C 0.008 3.992 14 N -0.951 5.951 15 Si 0.943 3.057 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.228 1.228 19 C 0.104 3.896 20 C -0.169 4.169 21 C -0.075 4.075 22 C -0.164 4.164 23 C 0.089 3.911 24 N -0.494 5.494 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.407 0.593 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.266 0.734 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.708 -9.279 -5.244 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.091 3.909 4 H 0.099 0.901 5 N -0.370 5.370 6 C 0.311 3.689 7 O -0.444 6.444 8 C -0.031 4.031 9 H 0.083 0.917 10 C -0.184 4.184 11 C -0.539 4.539 12 H 0.044 0.956 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.765 3.235 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.151 1.151 19 C -0.033 4.033 20 C -0.190 4.190 21 C -0.100 4.100 22 C -0.183 4.183 23 C -0.069 4.069 24 N -0.204 5.204 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.242 0.758 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.157 0.843 36 H 0.181 0.819 37 H 0.186 0.814 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 22.586 -9.638 -5.205 25.102 hybrid contribution 0.151 1.203 -0.164 1.224 sum 22.737 -8.435 -5.369 24.838 Atomic orbital electron populations 1.21744 0.96150 1.00570 1.01382 1.21751 0.95153 0.95032 1.03003 1.19794 0.88491 0.94474 0.88149 0.90134 1.46065 1.16480 1.58144 1.16310 1.21316 0.80560 0.76758 0.90287 1.90574 1.52366 1.59494 1.41919 1.19326 0.96440 0.96277 0.91079 0.91658 1.21811 1.00682 0.98156 0.97724 1.20854 0.95165 1.07326 1.30516 0.95560 1.26010 0.97692 0.98275 0.96900 1.70066 1.19894 1.23040 1.46120 0.85818 0.79717 0.79205 0.78750 1.19544 1.20996 1.15123 1.21041 0.94831 0.94596 0.92861 1.22191 0.96959 1.00233 0.99606 1.21974 0.92897 0.96442 0.98735 1.22565 1.03117 0.97361 0.95286 1.23310 0.89310 0.96675 0.97585 1.67392 1.08901 1.18154 1.25948 0.93996 0.94786 0.92132 0.90789 0.90327 0.75771 0.94266 0.91292 0.92586 0.92464 0.84331 0.81913 0.81386 0.80174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 8.51 71.98 0.61 -4.21 16 2 C -0.11 -3.16 5.42 30.60 0.17 -2.99 16 3 C 0.20 5.89 2.57 44.25 0.11 6.00 16 4 H 0.08 2.68 7.31 -2.39 -0.02 2.66 16 5 N -0.72 -24.39 4.88 -446.07 -2.18 -26.57 16 6 C 0.52 23.27 5.72 87.66 0.50 23.77 16 7 O -0.57 -29.76 12.90 -3.03 -0.04 -29.80 16 8 C -0.01 -0.44 2.30 -12.28 -0.03 -0.47 16 9 H 0.07 2.88 5.29 -2.39 -0.01 2.87 16 10 C -0.13 -4.98 9.12 71.98 0.66 -4.32 16 11 C -0.50 -30.00 8.36 25.60 0.21 -29.78 16 12 H 0.03 1.84 7.61 -2.91 -0.02 1.82 16 13 C 0.01 0.45 5.47 84.65 0.46 0.92 16 14 N -0.95 -61.39 13.96 21.45 0.30 -61.09 16 15 Si 0.94 43.37 26.99 68.60 1.85 45.22 16 16 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 18 H -0.23 -9.12 6.82 99.48 0.68 -8.44 16 19 C 0.10 2.55 5.62 42.55 0.24 2.79 16 20 C -0.17 -3.43 9.71 22.36 0.22 -3.22 16 21 C -0.07 -1.06 10.18 22.47 0.23 -0.83 16 22 C -0.16 -2.00 10.11 22.36 0.23 -1.78 16 23 C 0.09 1.42 11.18 84.67 0.95 2.37 16 24 N -0.49 -11.31 9.95 -183.89 -1.83 -13.14 16 25 H 0.04 1.54 7.85 -2.39 -0.02 1.52 16 26 H 0.03 1.38 5.64 -2.39 -0.01 1.37 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 29 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.41 12.18 7.93 -92.71 -0.74 11.45 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.15 7.43 -2.38 -0.02 2.13 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.16 16 34 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.14 2.62 7.95 -2.91 -0.02 2.60 16 36 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 38 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -77.11 314.13 2.95 -74.16 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.29 Total: 22.98 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 4.56 Total: -11.75 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -3.71 Total: -100.81 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.04 Total: -29.80 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.85 Total: 45.22 kcal Total: -77.11 2.95 -74.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911143317.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.427 kcal (2) G-P(sol) polarization free energy of solvation -77.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds