Wall clock time and date at job start Mon Mar 30 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46584 * 2 1 4 4 H 1.08995 * 109.46807 * 304.99095 * 3 2 1 5 5 N 1.46491 * 109.47311 * 65.00008 * 3 2 1 6 6 C 1.34777 * 120.00107 * 274.99498 * 5 3 2 7 7 O 1.21285 * 119.99590 * 0.02562 * 6 5 3 8 8 C 1.50694 * 120.00332 * 180.02562 * 6 5 3 9 9 H 1.09002 * 109.46876 * 299.99845 * 8 6 5 10 10 C 1.52998 * 109.47283 * 59.99953 * 8 6 5 11 11 C 1.50702 * 109.47449 * 180.02562 * 8 6 5 12 12 H 1.08001 * 119.99713 * 0.02562 * 11 8 6 13 13 C 1.37875 * 120.00339 * 179.97438 * 11 8 6 14 14 N 1.31517 * 120.00057 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99903 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47199 * 60.00363 * 15 13 11 17 17 H 1.48500 * 109.46862 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47242 * 299.99989 * 15 13 11 19 19 C 1.50707 * 109.46651 * 185.00073 * 3 2 1 20 20 C 1.38223 * 119.61967 * 125.00092 * 19 3 2 21 21 C 1.38625 * 119.15978 * 180.27814 * 20 19 3 22 22 C 1.38677 * 118.42126 * 359.46985 * 21 20 19 23 23 C 1.38182 * 119.16110 * 0.48634 * 22 21 20 24 24 N 1.31856 * 119.61465 * 304.97164 * 19 3 2 25 25 H 1.09004 * 109.47468 * 300.00180 * 1 2 3 26 26 H 1.09002 * 109.46958 * 60.00731 * 1 2 3 27 27 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47289 * 239.99774 * 2 1 3 29 29 H 1.09002 * 109.46958 * 119.99269 * 2 1 3 30 30 H 0.97005 * 119.99902 * 94.99917 * 5 3 2 31 31 H 1.09000 * 109.47075 * 299.99851 * 10 8 6 32 32 H 1.08997 * 109.46985 * 60.00507 * 10 8 6 33 33 H 1.09005 * 109.47191 * 180.02562 * 10 8 6 34 34 H 0.96997 * 120.00339 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.41617 * 359.97438 * 20 19 3 36 36 H 1.08003 * 120.79223 * 179.72202 * 21 20 19 37 37 H 1.08006 * 120.41702 * 180.22168 * 22 21 20 38 38 H 1.07998 * 119.61686 * 179.76233 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6523 2.0975 1.2517 6 6 0.4350 2.6644 1.3669 7 8 -0.3397 2.6319 0.4342 8 6 0.0365 3.3387 2.6543 9 1 0.0678 2.6146 3.4684 10 6 1.0069 4.4834 2.9522 11 6 -1.3615 3.8860 2.5230 12 1 -1.9070 3.7579 1.5997 13 6 -1.9445 4.5492 3.5818 14 7 -1.2805 4.7047 4.7063 15 14 -3.6771 5.2281 3.4187 16 1 -4.6189 4.1171 3.1290 17 1 -4.0698 5.8925 4.6874 18 1 -3.7197 6.2151 2.3100 19 6 3.5419 1.4444 -0.1239 20 6 4.1426 2.1628 -1.1405 21 6 5.5246 2.1531 -1.2491 22 6 6.2546 1.4269 -0.3201 23 6 5.5844 0.7338 0.6698 24 7 4.2677 0.7611 0.7393 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.2719 2.1232 1.9977 31 1 2.0179 4.0872 3.0474 32 1 0.9755 5.2075 2.1380 33 1 0.7189 4.9708 3.8836 34 1 -1.6907 5.1710 5.4514 35 1 3.5427 2.7205 -1.8444 36 1 6.0213 2.7014 -2.0359 37 1 7.3330 1.4001 -0.3722 38 1 6.1454 0.1628 1.3948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911143318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:47 Heat of formation + Delta-G solvation = -14.685196 kcal Electronic energy + Delta-G solvation = -19727.401215 eV Core-core repulsion = 16762.402356 eV Total energy + Delta-G solvation = -2964.998858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.47835 -38.83955 -35.44681 -33.66416 -32.51202 -31.85619 -31.22811 -30.03988 -26.35634 -25.07653 -23.70834 -22.68347 -22.52096 -20.43326 -19.30340 -17.21448 -16.53337 -16.11315 -16.01636 -15.34449 -15.08874 -14.67525 -14.31994 -13.79354 -13.63371 -13.32017 -13.21253 -12.68767 -12.31338 -12.17671 -12.00355 -11.43306 -11.22027 -11.04151 -10.90140 -10.69270 -10.59956 -10.48124 -10.16915 -10.00562 -9.91106 -9.54486 -9.19450 -8.92624 -8.51947 -8.31037 -8.22951 -5.97921 -4.00924 0.95386 1.15862 3.39410 3.41744 3.46895 3.59533 3.79380 4.11059 4.19233 4.51564 4.60781 4.70570 4.93901 5.01350 5.31966 5.34743 5.38788 5.48645 5.58514 5.70166 5.94051 5.98142 6.04463 6.22469 6.31138 6.33781 6.53791 6.63096 6.68301 6.87331 6.92223 6.99408 7.17459 7.54182 7.81041 7.90082 8.05025 8.22050 8.52967 9.07740 9.32002 9.64381 11.09694 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029889 B = 0.004855 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.562183 B = 5765.581482 C = 6205.607728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.196 3.804 4 H 0.095 0.905 5 N -0.734 5.734 6 C 0.522 3.478 7 O -0.541 6.541 8 C 0.030 3.970 9 H 0.052 0.948 10 C -0.132 4.132 11 C -0.498 4.498 12 H 0.074 0.926 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.900 3.100 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.127 3.873 20 C -0.159 4.159 21 C -0.076 4.076 22 C -0.178 4.178 23 C 0.099 3.901 24 N -0.471 5.471 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.398 0.602 31 H 0.010 0.990 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.260 0.740 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.887 -6.860 -8.948 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.161 4.161 3 C 0.090 3.910 4 H 0.113 0.887 5 N -0.388 5.388 6 C 0.312 3.688 7 O -0.417 6.417 8 C 0.009 3.991 9 H 0.069 0.931 10 C -0.190 4.190 11 C -0.537 4.537 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.203 1.203 19 C -0.011 4.011 20 C -0.179 4.179 21 C -0.102 4.102 22 C -0.198 4.198 23 C -0.058 4.058 24 N -0.180 5.180 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 13.837 -7.253 -8.786 17.924 hybrid contribution 0.088 0.866 -0.359 0.942 sum 13.925 -6.386 -9.145 17.842 Atomic orbital electron populations 1.21826 0.94358 1.00186 1.03906 1.21849 0.97089 0.95223 1.01915 1.19748 0.86218 0.94714 0.90281 0.88669 1.46318 1.18237 1.59311 1.14925 1.21909 0.79273 0.75951 0.91709 1.90531 1.51033 1.58743 1.41396 1.18859 0.96715 0.94451 0.89099 0.93076 1.21733 0.94492 0.99097 1.03640 1.21105 0.97648 1.34833 1.00113 0.90788 1.24951 0.98062 0.96119 0.95149 1.69868 1.37216 1.43102 1.03495 0.86520 0.84463 0.79196 0.77016 1.20215 1.21456 1.20268 1.21474 0.96435 0.92227 0.91008 1.22042 0.95541 1.00310 0.99991 1.21581 0.93890 0.96698 0.98017 1.22145 1.01324 0.99456 0.96853 1.22785 0.90162 0.96319 0.96554 1.67486 1.07367 1.17775 1.25365 0.91310 0.92387 0.94018 0.92419 0.91100 0.76751 0.97063 0.95096 0.88910 0.92981 0.84599 0.84845 0.84929 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 8.51 37.16 0.32 -2.16 16 2 C -0.12 -1.84 5.42 -26.73 -0.14 -1.99 16 3 C 0.20 3.10 2.57 -69.08 -0.18 2.92 16 4 H 0.10 1.58 7.31 -51.93 -0.38 1.20 16 5 N -0.73 -13.41 4.91 -54.94 -0.27 -13.68 16 6 C 0.52 11.80 5.72 -10.99 -0.06 11.74 16 7 O -0.54 -13.47 12.60 5.55 0.07 -13.40 16 8 C 0.03 0.75 2.64 -92.93 -0.24 0.51 16 9 H 0.05 1.35 8.14 -51.93 -0.42 0.92 16 10 C -0.13 -3.10 8.87 37.16 0.33 -2.77 16 11 C -0.50 -14.18 8.37 -34.44 -0.29 -14.47 16 12 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 14 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 15 Si 0.90 22.01 29.54 -169.99 -5.02 16.98 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C 0.13 1.74 5.62 -82.58 -0.46 1.28 16 20 C -0.16 -1.84 9.71 -39.44 -0.38 -2.22 16 21 C -0.08 -0.71 10.18 -39.28 -0.40 -1.11 16 22 C -0.18 -1.58 10.11 -39.44 -0.40 -1.98 16 23 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 24 N -0.47 -6.33 9.95 -9.47 -0.09 -6.43 16 25 H 0.07 1.39 5.64 -51.93 -0.29 1.10 16 26 H 0.06 1.02 7.85 -51.93 -0.41 0.61 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.40 6.94 7.99 -40.82 -0.33 6.62 16 31 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.14 1.40 7.95 -52.49 -0.42 0.99 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 314.11 15.07 4.73 4.73 Total: -1.00 -31.10 314.11 -7.56 -38.67 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.40 Total: 5.85 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.21 Total: -7.88 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.26 Total: -44.96 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.07 Total: -13.40 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.10 -7.56 -38.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911143318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.981 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds