Wall clock time and date at job start Mon Mar 30 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46584 * 2 1 4 4 H 1.08995 * 109.46807 * 304.99095 * 3 2 1 5 5 N 1.46491 * 109.47311 * 65.00008 * 3 2 1 6 6 C 1.34777 * 120.00107 * 274.99498 * 5 3 2 7 7 O 1.21285 * 119.99590 * 0.02562 * 6 5 3 8 8 C 1.50694 * 120.00332 * 180.02562 * 6 5 3 9 9 H 1.09002 * 109.46876 * 299.99845 * 8 6 5 10 10 C 1.52998 * 109.47283 * 59.99953 * 8 6 5 11 11 C 1.50702 * 109.47449 * 180.02562 * 8 6 5 12 12 H 1.08001 * 119.99713 * 0.02562 * 11 8 6 13 13 C 1.37875 * 120.00339 * 179.97438 * 11 8 6 14 14 N 1.31517 * 120.00057 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99903 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.47199 * 60.00363 * 15 13 11 17 17 H 1.48500 * 109.46862 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47242 * 299.99989 * 15 13 11 19 19 C 1.50707 * 109.46651 * 185.00073 * 3 2 1 20 20 C 1.38223 * 119.61967 * 125.00092 * 19 3 2 21 21 C 1.38625 * 119.15978 * 180.27814 * 20 19 3 22 22 C 1.38677 * 118.42126 * 359.46985 * 21 20 19 23 23 C 1.38182 * 119.16110 * 0.48634 * 22 21 20 24 24 N 1.31856 * 119.61465 * 304.97164 * 19 3 2 25 25 H 1.09004 * 109.47468 * 300.00180 * 1 2 3 26 26 H 1.09002 * 109.46958 * 60.00731 * 1 2 3 27 27 H 1.09000 * 109.47129 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47289 * 239.99774 * 2 1 3 29 29 H 1.09002 * 109.46958 * 119.99269 * 2 1 3 30 30 H 0.97005 * 119.99902 * 94.99917 * 5 3 2 31 31 H 1.09000 * 109.47075 * 299.99851 * 10 8 6 32 32 H 1.08997 * 109.46985 * 60.00507 * 10 8 6 33 33 H 1.09005 * 109.47191 * 180.02562 * 10 8 6 34 34 H 0.96997 * 120.00339 * 180.02562 * 14 13 11 35 35 H 1.08002 * 120.41617 * 359.97438 * 20 19 3 36 36 H 1.08003 * 120.79223 * 179.72202 * 21 20 19 37 37 H 1.08006 * 120.41702 * 180.22168 * 22 21 20 38 38 H 1.07998 * 119.61686 * 179.76233 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6523 2.0975 1.2517 6 6 0.4350 2.6644 1.3669 7 8 -0.3397 2.6319 0.4342 8 6 0.0365 3.3387 2.6543 9 1 0.0678 2.6146 3.4684 10 6 1.0069 4.4834 2.9522 11 6 -1.3615 3.8860 2.5230 12 1 -1.9070 3.7579 1.5997 13 6 -1.9445 4.5492 3.5818 14 7 -1.2805 4.7047 4.7063 15 14 -3.6771 5.2281 3.4187 16 1 -4.6189 4.1171 3.1290 17 1 -4.0698 5.8925 4.6874 18 1 -3.7197 6.2151 2.3100 19 6 3.5419 1.4444 -0.1239 20 6 4.1426 2.1628 -1.1405 21 6 5.5246 2.1531 -1.2491 22 6 6.2546 1.4269 -0.3201 23 6 5.5844 0.7338 0.6698 24 7 4.2677 0.7611 0.7393 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 2.2719 2.1232 1.9977 31 1 2.0179 4.0872 3.0474 32 1 0.9755 5.2075 2.1380 33 1 0.7189 4.9708 3.8836 34 1 -1.6907 5.1710 5.4514 35 1 3.5427 2.7205 -1.8444 36 1 6.0213 2.7014 -2.0359 37 1 7.3330 1.4001 -0.3722 38 1 6.1454 0.1628 1.3948 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911143318.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:47 Heat of formation + Delta-G solvation = -34.593693 kcal Electronic energy + Delta-G solvation = -19728.264512 eV Core-core repulsion = 16762.402356 eV Total energy + Delta-G solvation = -2965.862156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49327 -40.38858 -36.87750 -35.69951 -33.54351 -33.31632 -32.24019 -31.88453 -27.61579 -27.16384 -24.53860 -24.45245 -23.57591 -21.77401 -20.99771 -18.48996 -18.17195 -17.51072 -17.29495 -16.67120 -16.47104 -16.17664 -15.94706 -15.03114 -14.85555 -14.75265 -14.42470 -14.03859 -13.96073 -13.65488 -13.25119 -12.98968 -12.93826 -12.67237 -12.65657 -12.40911 -12.25106 -12.13393 -11.95386 -11.79297 -11.03809 -10.80726 -10.59612 -10.44843 -10.28537 -9.91957 -9.81927 -8.12893 -6.23307 0.11712 0.38639 1.42009 1.43794 1.52198 1.99658 2.35814 2.52887 2.96892 3.16651 3.21723 3.66871 4.03215 4.12298 4.17116 4.25419 4.29257 4.32438 4.47891 4.68543 4.71743 4.75126 4.85744 4.90692 4.94487 4.99535 5.02369 5.17861 5.28241 5.28752 5.48223 5.49990 5.65853 5.75762 5.80097 5.94748 6.22134 6.75484 6.88794 7.05413 7.42296 7.59401 8.93035 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029889 B = 0.004855 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.562183 B = 5765.581482 C = 6205.607728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C 0.197 3.803 4 H 0.084 0.916 5 N -0.717 5.717 6 C 0.526 3.474 7 O -0.570 6.570 8 C 0.024 3.976 9 H 0.034 0.966 10 C -0.117 4.117 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.018 3.982 14 N -0.913 5.913 15 Si 0.957 3.043 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.275 1.275 19 C 0.103 3.897 20 C -0.168 4.168 21 C -0.074 4.074 22 C -0.164 4.164 23 C 0.087 3.913 24 N -0.497 5.497 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.403 0.597 31 H 0.042 0.958 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.141 0.859 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.124 -7.107 -9.719 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.091 3.909 4 H 0.102 0.898 5 N -0.370 5.370 6 C 0.315 3.685 7 O -0.448 6.448 8 C 0.003 3.997 9 H 0.052 0.948 10 C -0.175 4.175 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.181 4.181 14 N -0.553 5.553 15 Si 0.782 3.218 16 H -0.202 1.202 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.034 4.034 20 C -0.188 4.188 21 C -0.100 4.100 22 C -0.183 4.183 23 C -0.071 4.071 24 N -0.207 5.207 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.239 0.761 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.159 0.841 36 H 0.183 0.817 37 H 0.187 0.813 38 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 16.113 -7.514 -9.552 20.182 hybrid contribution -0.475 0.888 -0.129 1.015 sum 15.638 -6.626 -9.681 19.549 Atomic orbital electron populations 1.21740 0.95922 1.00631 1.01455 1.21762 0.95433 0.95080 1.02846 1.19808 0.88505 0.94430 0.88116 0.89822 1.46065 1.16621 1.58033 1.16247 1.21338 0.80412 0.76268 0.90446 1.90510 1.52230 1.60128 1.41980 1.18785 0.96087 0.94751 0.90065 0.94796 1.21531 0.95763 0.98221 1.02029 1.21252 0.99412 1.35968 0.99623 0.92956 1.25625 1.01517 0.96172 0.94818 1.69958 1.38412 1.43123 1.03798 0.85635 0.80212 0.78519 0.77406 1.20166 1.20098 1.20062 1.21080 0.94910 0.94589 0.92861 1.22192 0.96974 1.00079 0.99598 1.21984 0.92894 0.96402 0.98721 1.22567 1.03115 0.97381 0.95245 1.23298 0.89311 0.96772 0.97671 1.67389 1.08992 1.18446 1.25883 0.95006 0.93484 0.92092 0.90125 0.91306 0.76150 0.93880 0.95704 0.91108 0.92690 0.84116 0.81722 0.81326 0.80348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 8.51 71.98 0.61 -4.24 16 2 C -0.11 -3.36 5.42 30.60 0.17 -3.20 16 3 C 0.20 6.21 2.57 44.25 0.11 6.32 16 4 H 0.08 2.83 7.31 -2.39 -0.02 2.81 16 5 N -0.72 -26.56 4.91 -446.11 -2.19 -28.75 16 6 C 0.53 24.57 5.72 87.66 0.50 25.07 16 7 O -0.57 -29.53 12.60 -3.04 -0.04 -29.57 16 8 C 0.02 1.26 2.64 -12.29 -0.03 1.23 16 9 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 10 C -0.12 -5.59 8.87 71.98 0.64 -4.95 16 11 C -0.52 -30.77 8.37 25.60 0.21 -30.55 16 12 H 0.05 3.24 6.75 -2.91 -0.02 3.22 16 13 C 0.02 1.00 5.30 84.65 0.45 1.44 16 14 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 15 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 C 0.10 2.70 5.62 42.55 0.24 2.94 16 20 C -0.17 -3.58 9.71 22.36 0.22 -3.36 16 21 C -0.07 -1.13 10.18 22.47 0.23 -0.90 16 22 C -0.16 -2.23 10.11 22.36 0.23 -2.01 16 23 C 0.09 1.57 11.18 84.67 0.95 2.51 16 24 N -0.50 -12.55 9.95 -183.88 -1.83 -14.38 16 25 H 0.03 1.32 5.64 -2.39 -0.01 1.31 16 26 H 0.05 1.70 7.85 -2.39 -0.02 1.68 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 29 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 30 H 0.40 14.06 7.99 -92.70 -0.74 13.32 16 31 H 0.04 1.72 7.56 -2.39 -0.02 1.70 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 3.70 6.07 -2.38 -0.01 3.68 16 34 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.14 2.73 7.95 -2.91 -0.02 2.71 16 36 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -68.86 314.11 3.05 -65.81 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.32 Total: 21.15 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.52 Total: -9.68 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -3.78 Total: -95.31 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.04 Total: -29.57 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.86 3.05 -65.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911143318.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.219 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds