Wall clock time and date at job start Mon Mar 30 2020 07:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00374 * 2 1 4 4 H 1.09005 * 110.43230 * 328.90887 * 3 2 1 5 5 C 1.54884 * 110.48885 * 91.45556 * 3 2 1 6 6 C 1.54894 * 102.74927 * 156.75662 * 5 3 2 7 7 C 1.54269 * 104.19133 * 322.05240 * 6 5 3 8 8 H 1.08993 * 110.03759 * 264.27776 * 7 6 5 9 9 N 1.46509 * 110.02971 * 142.89625 * 7 6 5 10 10 C 1.38816 * 119.99800 * 87.09203 * 9 7 6 11 11 C 1.39800 * 119.58414 * 359.97438 * 10 9 7 12 12 C 1.38601 * 119.48667 * 180.02562 * 11 10 9 13 13 C 1.38381 * 118.68446 * 359.74062 * 12 11 10 14 14 C 1.40556 * 119.14903 * 0.50280 * 13 12 11 15 15 C 1.41318 * 119.78873 * 179.76755 * 14 13 12 16 16 H 1.08001 * 119.99489 * 359.72697 * 15 14 13 17 17 C 1.40028 * 120.00133 * 179.72187 * 15 14 13 18 18 N 1.30744 * 119.99826 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99547 * 180.27585 * 17 15 14 20 20 H 1.48498 * 109.46909 * 269.72543 * 19 17 15 21 21 H 1.48496 * 109.47434 * 29.72775 * 19 17 15 22 22 H 1.48507 * 109.46769 * 149.72877 * 19 17 15 23 23 N 1.31953 * 119.58479 * 180.02562 * 10 9 7 24 24 C 1.53878 * 106.64191 * 23.59065 * 7 6 5 25 25 H 1.08995 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46822 * 300.00132 * 1 2 3 27 27 H 1.08997 * 109.47080 * 59.99620 * 1 2 3 28 28 H 1.09000 * 110.75634 * 38.43461 * 5 3 2 29 29 H 1.09000 * 110.75565 * 275.06783 * 5 3 2 30 30 H 1.08995 * 110.48401 * 203.38148 * 6 5 3 31 31 H 1.08999 * 110.60134 * 80.78905 * 6 5 3 32 32 H 0.96996 * 119.99933 * 267.09600 * 9 7 6 33 33 H 1.07991 * 120.25557 * 0.03937 * 11 10 9 34 34 H 1.08001 * 120.65774 * 180.02562 * 12 11 10 35 35 H 1.08005 * 120.43015 * 180.24555 * 13 12 11 36 36 H 0.97005 * 119.99633 * 179.97438 * 18 17 15 37 37 H 1.09004 * 110.03483 * 119.30497 * 24 7 6 38 38 H 1.08992 * 110.03150 * 240.73608 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3661 2.0088 -0.5275 5 6 2.2645 1.7856 1.4504 6 6 3.3828 2.8421 1.2696 7 6 4.2864 2.2515 0.1675 8 1 5.1251 1.7201 0.6172 9 7 4.7796 3.3212 -0.7037 10 6 5.9402 4.0068 -0.3720 11 6 6.6312 3.6697 0.7956 12 6 7.7895 4.3559 1.1251 13 6 8.2319 5.3572 0.2786 14 6 7.4904 5.6530 -0.8782 15 6 7.9272 6.6762 -1.7496 16 1 8.8257 7.2310 -1.5233 17 6 7.1950 6.9707 -2.9063 18 7 6.1070 6.2993 -3.1799 19 14 7.7767 8.3181 -4.0620 20 1 7.1727 9.6127 -3.6567 21 1 9.2567 8.4206 -3.9977 22 1 7.3630 7.9919 -5.4505 23 7 6.3768 4.9691 -1.1622 24 6 3.4148 1.2738 -0.6401 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.6088 0.9616 2.0754 29 1 1.3672 2.2409 1.8694 30 1 3.9432 2.9667 2.1962 31 1 2.9620 3.7948 0.9482 32 1 4.2952 3.5504 -1.5121 33 1 6.2654 2.8806 1.4358 34 1 8.3384 4.1108 2.0224 35 1 9.1332 5.9072 0.5060 36 1 5.5996 6.5035 -3.9811 37 1 3.3588 1.5951 -1.6802 38 1 3.8300 0.2678 -0.5816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116733575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:41 Heat of formation + Delta-G solvation = -13.349778 kcal Electronic energy + Delta-G solvation = -19377.932260 eV Core-core repulsion = 16412.991310 eV Total energy + Delta-G solvation = -2964.940950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.25062 -38.06701 -36.41021 -33.79507 -32.69767 -30.32734 -29.11768 -28.56871 -26.75888 -25.70123 -25.31139 -21.54022 -20.99014 -20.67597 -19.62239 -17.40601 -16.97196 -16.15680 -15.85094 -15.08525 -14.97673 -14.73503 -14.30802 -13.68601 -13.47375 -13.28289 -12.88227 -12.57691 -12.44676 -11.91498 -11.69105 -11.58661 -11.38452 -11.19638 -11.06816 -10.96428 -10.69730 -10.63990 -10.49078 -10.27122 -9.87590 -9.60494 -9.45056 -8.84687 -7.88483 -7.47837 -6.47652 -6.30230 -4.44596 2.89794 3.12406 3.15828 3.26988 3.32248 3.67668 4.00208 4.21596 4.64530 4.67715 4.88028 5.08884 5.20008 5.20861 5.40463 5.50102 5.53371 5.59975 5.71046 5.74944 5.87670 6.06838 6.10162 6.16418 6.20809 6.34946 6.43581 6.67778 6.88973 6.93199 6.99844 7.15585 7.27954 7.63718 7.85199 7.96198 8.19691 8.40845 8.72171 8.83486 9.15673 10.27620 10.43266 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.004523 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.156381 B = 6189.255845 C = 6995.549920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.067 0.933 5 C -0.144 4.144 6 C -0.137 4.137 7 C 0.165 3.835 8 H 0.082 0.918 9 N -0.732 5.732 10 C 0.412 3.588 11 C -0.367 4.367 12 C -0.032 4.032 13 C -0.318 4.318 14 C 0.293 3.707 15 C -0.435 4.435 16 H 0.082 0.918 17 C 0.072 3.928 18 N -0.717 5.717 19 Si 0.904 3.096 20 H -0.270 1.270 21 H -0.262 1.262 22 H -0.278 1.278 23 N -0.532 5.532 24 C -0.126 4.126 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.394 0.606 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.269 0.731 37 H 0.077 0.923 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -7.869 4.010 12.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.182 4.182 6 C -0.176 4.176 7 C 0.057 3.943 8 H 0.100 0.900 9 N -0.368 5.368 10 C 0.172 3.828 11 C -0.392 4.392 12 C -0.057 4.057 13 C -0.341 4.341 14 C 0.166 3.834 15 C -0.468 4.468 16 H 0.101 0.899 17 C -0.153 4.153 18 N -0.338 5.338 19 Si 0.729 3.271 20 H -0.195 1.195 21 H -0.186 1.186 22 H -0.203 1.203 23 N -0.253 5.253 24 C -0.164 4.164 25 H 0.101 0.899 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.229 0.771 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.989 -7.958 3.240 13.176 hybrid contribution 0.258 0.706 0.033 0.753 sum -9.730 -7.252 3.273 12.569 Atomic orbital electron populations 1.22741 0.81502 1.02401 0.99879 1.87905 1.19315 1.28097 1.94984 1.23077 0.94636 0.83894 0.95879 0.91490 1.22963 0.99052 0.99242 0.96941 1.22869 0.96434 0.98419 0.99883 1.21198 0.95409 0.87576 0.90068 0.89980 1.44350 1.26765 1.38341 1.27322 1.18544 0.85626 0.89356 0.89293 1.20631 1.04054 1.11189 1.03367 1.20597 0.94365 0.94248 0.96463 1.21526 1.04905 1.06417 1.01233 1.18197 0.86269 0.89797 0.89168 1.19580 1.08622 1.14545 1.04014 0.89948 1.26041 0.94358 0.96606 0.98296 1.70157 1.10585 1.31823 1.21281 0.86388 0.80256 0.81200 0.79279 1.19544 1.18607 1.20271 1.68222 1.16997 1.09615 1.30499 1.22468 0.93427 1.00695 0.99836 0.89919 0.94196 0.94147 0.90570 0.91809 0.91127 0.90864 0.77060 0.89087 0.89017 0.88788 0.92011 0.90445 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.87 101.05 1.10 1.38 16 2 O -0.38 -4.73 10.42 -35.23 -0.37 -5.10 16 3 C 0.08 1.01 3.32 -25.02 -0.08 0.93 16 4 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 5 C -0.14 -1.70 6.62 -24.74 -0.16 -1.86 16 6 C -0.14 -1.95 6.53 -25.07 -0.16 -2.11 16 7 C 0.16 2.60 2.89 -66.80 -0.19 2.41 16 8 H 0.08 1.35 6.43 -51.93 -0.33 1.02 16 9 N -0.73 -14.57 5.21 -52.81 -0.27 -14.85 16 10 C 0.41 10.06 7.65 -155.33 -1.19 8.87 16 11 C -0.37 -8.48 9.25 -38.86 -0.36 -8.84 16 12 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 13 C -0.32 -8.15 9.83 -38.66 -0.38 -8.53 16 14 C 0.29 8.24 6.55 -85.00 -0.56 7.68 16 15 C -0.44 -11.93 9.14 -37.74 -0.34 -12.27 16 16 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 17 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 18 N -0.72 -19.16 11.46 55.55 0.64 -18.53 16 19 Si 0.90 18.87 29.56 -169.99 -5.02 13.84 16 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 23 N -0.53 -14.78 7.89 -10.33 -0.08 -14.86 16 24 C -0.13 -1.70 6.34 -25.55 -0.16 -1.86 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.32 8.14 -51.92 -0.42 -0.10 16 27 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 32 H 0.39 7.86 8.43 -40.82 -0.34 7.52 16 33 H 0.09 1.87 6.21 -52.49 -0.33 1.55 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 36 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 37 H 0.08 1.05 7.61 -51.93 -0.40 0.66 16 38 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 LS Contribution 314.19 15.07 4.73 4.73 Total: -1.00 -29.90 314.19 -8.94 -38.84 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.57 Total: 9.54 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.99 Total: -13.61 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.28 Total: -48.24 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.37 Total: -5.10 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.90 -8.94 -38.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116733575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.486 kcal (2) G-P(sol) polarization free energy of solvation -29.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds