Wall clock time and date at job start Mon Mar 30 2020 07:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00374 * 2 1 4 4 H 1.09005 * 110.43230 * 328.90887 * 3 2 1 5 5 C 1.54884 * 110.48885 * 91.45556 * 3 2 1 6 6 C 1.54894 * 102.74927 * 156.75662 * 5 3 2 7 7 C 1.54269 * 104.19133 * 322.05240 * 6 5 3 8 8 H 1.08993 * 110.03759 * 264.27776 * 7 6 5 9 9 N 1.46509 * 110.02971 * 142.89625 * 7 6 5 10 10 C 1.38816 * 119.99800 * 87.09203 * 9 7 6 11 11 C 1.39800 * 119.58414 * 359.97438 * 10 9 7 12 12 C 1.38601 * 119.48667 * 180.02562 * 11 10 9 13 13 C 1.38381 * 118.68446 * 359.74062 * 12 11 10 14 14 C 1.40556 * 119.14903 * 0.50280 * 13 12 11 15 15 C 1.41318 * 119.78873 * 179.76755 * 14 13 12 16 16 H 1.08001 * 119.99489 * 359.72697 * 15 14 13 17 17 C 1.40028 * 120.00133 * 179.72187 * 15 14 13 18 18 N 1.30744 * 119.99826 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99547 * 180.27585 * 17 15 14 20 20 H 1.48498 * 109.46909 * 269.72543 * 19 17 15 21 21 H 1.48496 * 109.47434 * 29.72775 * 19 17 15 22 22 H 1.48507 * 109.46769 * 149.72877 * 19 17 15 23 23 N 1.31953 * 119.58479 * 180.02562 * 10 9 7 24 24 C 1.53878 * 106.64191 * 23.59065 * 7 6 5 25 25 H 1.08995 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46822 * 300.00132 * 1 2 3 27 27 H 1.08997 * 109.47080 * 59.99620 * 1 2 3 28 28 H 1.09000 * 110.75634 * 38.43461 * 5 3 2 29 29 H 1.09000 * 110.75565 * 275.06783 * 5 3 2 30 30 H 1.08995 * 110.48401 * 203.38148 * 6 5 3 31 31 H 1.08999 * 110.60134 * 80.78905 * 6 5 3 32 32 H 0.96996 * 119.99933 * 267.09600 * 9 7 6 33 33 H 1.07991 * 120.25557 * 0.03937 * 11 10 9 34 34 H 1.08001 * 120.65774 * 180.02562 * 12 11 10 35 35 H 1.08005 * 120.43015 * 180.24555 * 13 12 11 36 36 H 0.97005 * 119.99633 * 179.97438 * 18 17 15 37 37 H 1.09004 * 110.03483 * 119.30497 * 24 7 6 38 38 H 1.08992 * 110.03150 * 240.73608 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3661 2.0088 -0.5275 5 6 2.2645 1.7856 1.4504 6 6 3.3828 2.8421 1.2696 7 6 4.2864 2.2515 0.1675 8 1 5.1251 1.7201 0.6172 9 7 4.7796 3.3212 -0.7037 10 6 5.9402 4.0068 -0.3720 11 6 6.6312 3.6697 0.7956 12 6 7.7895 4.3559 1.1251 13 6 8.2319 5.3572 0.2786 14 6 7.4904 5.6530 -0.8782 15 6 7.9272 6.6762 -1.7496 16 1 8.8257 7.2310 -1.5233 17 6 7.1950 6.9707 -2.9063 18 7 6.1070 6.2993 -3.1799 19 14 7.7767 8.3181 -4.0620 20 1 7.1727 9.6127 -3.6567 21 1 9.2567 8.4206 -3.9977 22 1 7.3630 7.9919 -5.4505 23 7 6.3768 4.9691 -1.1622 24 6 3.4148 1.2738 -0.6401 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.6088 0.9616 2.0754 29 1 1.3672 2.2409 1.8694 30 1 3.9432 2.9667 2.1962 31 1 2.9620 3.7948 0.9482 32 1 4.2952 3.5504 -1.5121 33 1 6.2654 2.8806 1.4358 34 1 8.3384 4.1108 2.0224 35 1 9.1332 5.9072 0.5060 36 1 5.5996 6.5035 -3.9811 37 1 3.3588 1.5951 -1.6802 38 1 3.8300 0.2678 -0.5816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116733575.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:40 Heat of formation + Delta-G solvation = -31.049606 kcal Electronic energy + Delta-G solvation = -19378.699782 eV Core-core repulsion = 16412.991310 eV Total energy + Delta-G solvation = -2965.708473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55214 -39.64014 -37.63494 -35.55922 -34.32452 -32.22926 -30.77002 -29.69719 -27.91403 -27.21977 -26.69429 -23.40094 -22.67901 -21.71546 -21.04799 -19.23366 -18.29485 -17.58243 -16.99550 -16.58984 -16.48048 -15.94932 -15.79152 -15.31792 -14.80249 -14.65568 -14.39002 -14.13721 -13.71285 -13.51145 -13.11170 -12.80288 -12.72337 -12.63155 -12.56233 -12.28901 -12.22953 -12.13035 -11.76443 -11.66936 -11.53203 -11.24266 -10.64587 -10.45914 -9.82371 -9.42975 -8.27097 -8.21707 -6.46625 1.07556 1.36411 1.41893 1.54940 1.59508 2.25775 2.63159 2.83464 2.94161 3.56690 3.63696 4.07710 4.12306 4.27782 4.35982 4.39652 4.46896 4.51012 4.57358 4.64954 4.65872 4.77177 4.87975 4.90809 4.98142 5.02001 5.03961 5.10214 5.14727 5.24262 5.32109 5.42537 5.74120 5.98700 6.10372 6.24066 6.30063 6.59232 6.85389 6.96981 7.24541 8.36223 8.52577 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.027174 B = 0.004523 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.156381 B = 6189.255845 C = 6995.549920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.088 3.912 4 H 0.073 0.927 5 C -0.132 4.132 6 C -0.131 4.131 7 C 0.161 3.839 8 H 0.078 0.922 9 N -0.726 5.726 10 C 0.396 3.604 11 C -0.365 4.365 12 C -0.031 4.031 13 C -0.346 4.346 14 C 0.259 3.741 15 C -0.473 4.473 16 H 0.085 0.915 17 C 0.027 3.973 18 N -0.752 5.752 19 Si 0.986 3.014 20 H -0.263 1.263 21 H -0.257 1.257 22 H -0.268 1.268 23 N -0.566 5.566 24 C -0.121 4.121 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.392 0.608 33 H 0.119 0.881 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.276 0.724 37 H 0.073 0.927 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.465 -8.489 4.447 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.170 4.170 6 C -0.171 4.171 7 C 0.055 3.945 8 H 0.096 0.904 9 N -0.360 5.360 10 C 0.156 3.844 11 C -0.391 4.391 12 C -0.055 4.055 13 C -0.369 4.369 14 C 0.132 3.868 15 C -0.505 4.505 16 H 0.103 0.897 17 C -0.195 4.195 18 N -0.374 5.374 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.181 1.181 22 H -0.193 1.193 23 N -0.288 5.288 24 C -0.159 4.159 25 H 0.116 0.884 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.136 0.864 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.972 -8.622 3.707 14.439 hybrid contribution 0.475 0.762 -0.020 0.898 sum -10.497 -7.861 3.688 13.623 Atomic orbital electron populations 1.22960 0.79730 1.03791 1.00718 1.87873 1.21260 1.27819 1.95086 1.22975 0.93836 0.84320 0.95903 0.90884 1.22891 0.98671 0.98490 0.96937 1.22758 0.96921 0.98486 0.98919 1.21436 0.95860 0.86897 0.90337 0.90444 1.44529 1.25364 1.38459 1.27677 1.18979 0.86815 0.89088 0.89552 1.20968 1.03680 1.11363 1.03084 1.21009 0.94382 0.93010 0.97075 1.21683 1.05594 1.08012 1.01602 1.18670 0.87107 0.90585 0.90411 1.19937 1.09579 1.15517 1.05483 0.89668 1.26940 0.94141 0.98943 0.99449 1.70251 1.11673 1.33407 1.22098 0.85170 0.79750 0.77660 0.76831 1.18823 1.18104 1.19302 1.68196 1.17591 1.11026 1.32029 1.22381 0.94171 0.99994 0.99349 0.88365 0.93139 0.93520 0.89963 0.90081 0.91257 0.92292 0.77382 0.86357 0.85405 0.88100 0.91386 0.90853 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.87 113.37 1.23 1.60 16 2 O -0.40 -8.93 10.42 -148.98 -1.55 -10.49 16 3 C 0.09 1.95 3.32 31.70 0.11 2.06 16 4 H 0.07 1.54 7.86 -2.38 -0.02 1.52 16 5 C -0.13 -2.79 6.62 31.88 0.21 -2.58 16 6 C -0.13 -3.56 6.53 31.67 0.21 -3.36 16 7 C 0.16 4.90 2.89 45.72 0.13 5.04 16 8 H 0.08 2.45 6.43 -2.39 -0.02 2.43 16 9 N -0.73 -29.02 5.21 -321.01 -1.67 -30.70 16 10 C 0.40 19.57 7.65 133.42 1.02 20.59 16 11 C -0.37 -16.62 9.25 22.73 0.21 -16.41 16 12 C -0.03 -1.41 10.15 22.39 0.23 -1.18 16 13 C -0.35 -18.03 9.83 22.87 0.22 -17.80 16 14 C 0.26 15.06 6.55 40.18 0.26 15.32 16 15 C -0.47 -26.73 9.14 23.46 0.21 -26.51 16 16 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 17 C 0.03 1.41 5.50 85.29 0.47 1.88 16 18 N -0.75 -41.19 11.46 21.84 0.25 -40.94 16 19 Si 0.99 39.12 29.56 68.60 2.03 41.15 16 20 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 N -0.57 -32.34 7.89 -186.58 -1.47 -33.82 16 24 C -0.12 -3.11 6.34 31.36 0.20 -2.91 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.05 0.65 8.10 -2.39 -0.02 0.64 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.78 8.05 -2.39 -0.02 1.76 16 32 H 0.39 15.91 8.43 -92.71 -0.78 15.13 16 33 H 0.12 4.64 6.21 -2.91 -0.02 4.62 16 34 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 36 H 0.28 13.62 8.29 -92.70 -0.77 12.85 16 37 H 0.07 1.95 7.61 -2.39 -0.02 1.93 16 38 H 0.09 2.16 8.07 -2.39 -0.02 2.14 16 Total: -1.00 -65.59 314.19 2.57 -63.02 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: 0.28 Total: 36.04 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 4.72 Total: -24.26 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -2.89 Total: -105.45 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.55 Total: -10.49 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -65.59 2.57 -63.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116733575.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.967 kcal (2) G-P(sol) polarization free energy of solvation -65.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds