Wall clock time and date at job start Mon Mar 30 2020 06:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00350 * 2 1 4 4 O 1.42901 * 109.46955 * 134.99873 * 3 2 1 5 5 C 1.42895 * 114.00139 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47269 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.38823 * 119.99845 * 180.02562 * 8 7 6 10 10 C 1.39801 * 119.58465 * 359.97438 * 9 8 7 11 11 C 1.38594 * 119.48854 * 180.02562 * 10 9 8 12 12 C 1.38384 * 118.68561 * 0.02562 * 11 10 9 13 13 C 1.40560 * 119.14720 * 359.97438 * 12 11 10 14 14 C 1.41317 * 119.78238 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99875 * 0.02562 * 14 13 12 16 16 C 1.40027 * 119.99786 * 180.02562 * 14 13 12 17 17 N 1.30747 * 119.99990 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99837 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47085 * 60.00557 * 18 16 14 20 20 H 1.48498 * 109.46905 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47149 * 300.00152 * 18 16 14 22 22 N 1.31959 * 119.58719 * 179.73222 * 9 8 7 23 23 H 1.08001 * 120.00473 * 179.97438 * 1 2 3 24 24 H 1.08004 * 119.99841 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99841 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46489 * 15.00422 * 3 2 1 27 27 H 1.08991 * 109.47010 * 254.99934 * 3 2 1 28 28 H 1.09001 * 109.47098 * 59.99755 * 5 4 3 29 29 H 1.09004 * 109.47055 * 300.00254 * 5 4 3 30 30 H 1.09001 * 109.46832 * 60.00112 * 6 5 4 31 31 H 1.08993 * 109.47194 * 299.99633 * 6 5 4 32 32 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 33 33 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 34 34 H 0.96998 * 120.00192 * 359.97438 * 8 7 6 35 35 H 1.07998 * 120.25204 * 359.97438 * 10 9 8 36 36 H 1.08005 * 120.65653 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.42946 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00065 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9078 2.4350 1.0330 6 6 5.0107 2.2537 2.0778 7 6 5.8475 3.5318 2.1632 8 7 6.9038 3.3580 3.1632 9 6 7.7948 4.3915 3.4184 10 6 7.6764 5.5942 2.7158 11 6 8.5674 6.6245 2.9718 12 6 9.5542 6.4285 3.9219 13 6 9.6215 5.1964 4.5950 14 6 10.6242 4.9816 5.5675 15 1 11.3352 5.7630 5.7916 16 6 10.6957 3.7557 6.2404 17 7 9.8351 2.8097 5.9686 18 14 12.0206 3.4721 7.5263 19 1 11.8753 4.4711 8.6153 20 1 11.8813 2.1041 8.0870 21 1 13.3586 3.6152 6.8983 22 7 8.7400 4.2279 4.3247 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3856 2.1160 0.2661 27 1 2.4756 1.4867 -0.9926 28 1 3.2679 3.2692 1.3206 29 1 4.3581 2.6406 0.0618 30 1 5.6505 1.4196 1.7896 31 1 4.5608 2.0480 3.0490 32 1 6.2973 3.7372 1.1918 33 1 5.2079 4.3662 2.4510 34 1 6.9802 2.5210 3.6475 35 1 6.8972 5.7192 1.9785 36 1 8.4930 7.5618 2.4403 37 1 10.2636 7.2122 4.1435 38 1 9.8849 1.9603 6.4345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118542077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:13 Heat of formation + Delta-G solvation = 5.064008 kcal Electronic energy + Delta-G solvation = -18299.794859 eV Core-core repulsion = 15335.652390 eV Total energy + Delta-G solvation = -2964.142469 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.51296 -38.13859 -35.70587 -34.20129 -33.34564 -31.65003 -30.25697 -28.60382 -26.38987 -25.34138 -24.40145 -21.99120 -21.11833 -20.30621 -20.12669 -17.37999 -16.87882 -16.48387 -16.16969 -15.55117 -14.82600 -14.76773 -14.61129 -14.12288 -13.81389 -13.28353 -12.94788 -12.84005 -12.69355 -12.09444 -12.00309 -11.47365 -11.41065 -11.24543 -11.09682 -10.98072 -10.96244 -10.59196 -10.39955 -10.06824 -9.90645 -9.57685 -9.44893 -8.85953 -7.88376 -7.48091 -6.49024 -6.29665 -4.44704 1.83473 2.91729 3.12462 3.15066 3.26419 3.33165 3.47985 4.00812 4.30631 4.69014 4.80377 4.86694 4.93915 5.06622 5.13944 5.24685 5.24967 5.48111 5.53394 5.59080 5.81927 6.06016 6.17752 6.21543 6.23204 6.27596 6.33037 6.59972 6.88537 6.91902 6.96369 7.03095 7.28219 7.62408 7.84037 7.94395 8.19374 8.39312 8.71456 8.83257 9.14874 10.27725 10.43491 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.003155 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.424442 B = 8872.476451 C = 9770.748092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.149 4.149 3 C 0.087 3.913 4 O -0.385 6.385 5 C 0.067 3.933 6 C -0.129 4.129 7 C 0.146 3.854 8 N -0.739 5.739 9 C 0.411 3.589 10 C -0.368 4.368 11 C -0.032 4.032 12 C -0.317 4.317 13 C 0.292 3.708 14 C -0.435 4.435 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.716 5.716 18 Si 0.906 3.094 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 N -0.532 5.532 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.396 0.604 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 -4.095 -8.918 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.167 4.167 3 C 0.011 3.989 4 O -0.305 6.305 5 C -0.010 4.010 6 C -0.167 4.167 7 C 0.020 3.980 8 N -0.376 5.376 9 C 0.171 3.829 10 C -0.394 4.394 11 C -0.057 4.057 12 C -0.340 4.340 13 C 0.165 3.835 14 C -0.467 4.467 15 H 0.101 0.899 16 C -0.154 4.154 17 N -0.338 5.338 18 Si 0.730 3.270 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.190 1.190 22 N -0.253 5.253 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.134 0.866 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.027 -5.140 -8.437 16.350 hybrid contribution 0.421 0.590 0.041 0.726 sum -12.607 -4.550 -8.396 15.815 Atomic orbital electron populations 1.23837 0.95574 1.02247 1.00375 1.22780 0.95656 0.98338 0.99973 1.21526 0.89036 0.95748 0.92582 1.87903 1.44599 1.37527 1.60428 1.22392 0.92667 0.86939 0.98957 1.21658 0.96402 0.99031 0.99590 1.20856 0.88951 0.95769 0.92394 1.44077 1.32505 1.16491 1.44548 1.18515 0.88464 0.85643 0.90248 1.20600 1.09043 0.96920 1.12814 1.20593 0.93765 0.96076 0.95238 1.21532 1.05102 1.00395 1.06963 1.18201 0.89398 0.86084 0.89826 1.19545 1.11393 0.99075 1.16658 0.89933 1.26055 0.96207 0.95867 0.97296 1.70143 1.28760 1.02869 1.32001 0.86432 0.81556 0.78090 0.80928 1.19018 1.20363 1.19024 1.68209 1.06339 1.32280 1.18505 0.87823 0.88437 0.86554 0.92800 0.92334 0.92991 0.92974 0.90519 0.90520 0.93020 0.93026 0.76895 0.89246 0.88953 0.88711 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 14.31 29.01 0.42 -0.89 16 2 C -0.15 -1.29 9.89 -36.03 -0.36 -1.65 16 3 C 0.09 0.81 6.35 36.01 0.23 1.04 16 4 O -0.39 -4.67 10.33 -35.23 -0.36 -5.04 16 5 C 0.07 0.75 5.94 37.16 0.22 0.97 16 6 C -0.13 -1.67 5.70 -26.73 -0.15 -1.82 16 7 C 0.15 2.28 4.88 -4.04 -0.02 2.26 16 8 N -0.74 -15.13 5.72 -60.39 -0.35 -15.47 16 9 C 0.41 10.27 7.65 -155.32 -1.19 9.08 16 10 C -0.37 -8.64 9.34 -38.87 -0.36 -9.00 16 11 C -0.03 -0.76 10.15 -39.40 -0.40 -1.16 16 12 C -0.32 -8.17 9.83 -38.65 -0.38 -8.55 16 13 C 0.29 8.29 6.55 -85.00 -0.56 7.73 16 14 C -0.43 -11.96 9.14 -37.74 -0.34 -12.30 16 15 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 16 C 0.07 1.84 5.50 -17.34 -0.10 1.75 16 17 N -0.72 -19.34 11.46 55.55 0.64 -18.70 16 18 Si 0.91 18.98 29.56 -169.99 -5.02 13.95 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 N -0.53 -15.00 7.89 -10.32 -0.08 -15.08 16 23 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 24 H 0.10 0.61 7.90 -52.48 -0.41 0.19 16 25 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 26 H 0.05 0.44 7.86 -51.93 -0.41 0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 33 H 0.05 0.79 7.92 -51.93 -0.41 0.38 16 34 H 0.40 8.10 8.59 -40.82 -0.35 7.75 16 35 H 0.09 1.85 6.68 -52.49 -0.35 1.50 16 36 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 37 H 0.09 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 LS Contribution 327.45 15.07 4.93 4.93 Total: -1.00 -30.75 327.45 -8.93 -39.69 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.70 Total: 8.27 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -2.99 Total: -12.54 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.21 Total: -49.26 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.36 Total: -5.04 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.75 -8.93 -39.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118542077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.750 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds