Wall clock time and date at job start Mon Mar 30 2020 06:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00350 * 2 1 4 4 O 1.42901 * 109.46955 * 134.99873 * 3 2 1 5 5 C 1.42895 * 114.00139 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47269 * 180.02562 * 5 4 3 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.46995 * 180.02562 * 7 6 5 9 9 C 1.38823 * 119.99845 * 180.02562 * 8 7 6 10 10 C 1.39801 * 119.58465 * 359.97438 * 9 8 7 11 11 C 1.38594 * 119.48854 * 180.02562 * 10 9 8 12 12 C 1.38384 * 118.68561 * 0.02562 * 11 10 9 13 13 C 1.40560 * 119.14720 * 359.97438 * 12 11 10 14 14 C 1.41317 * 119.78238 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99875 * 0.02562 * 14 13 12 16 16 C 1.40027 * 119.99786 * 180.02562 * 14 13 12 17 17 N 1.30747 * 119.99990 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99837 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47085 * 60.00557 * 18 16 14 20 20 H 1.48498 * 109.46905 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47149 * 300.00152 * 18 16 14 22 22 N 1.31959 * 119.58719 * 179.73222 * 9 8 7 23 23 H 1.08001 * 120.00473 * 179.97438 * 1 2 3 24 24 H 1.08004 * 119.99841 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99841 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46489 * 15.00422 * 3 2 1 27 27 H 1.08991 * 109.47010 * 254.99934 * 3 2 1 28 28 H 1.09001 * 109.47098 * 59.99755 * 5 4 3 29 29 H 1.09004 * 109.47055 * 300.00254 * 5 4 3 30 30 H 1.09001 * 109.46832 * 60.00112 * 6 5 4 31 31 H 1.08993 * 109.47194 * 299.99633 * 6 5 4 32 32 H 1.09001 * 109.46801 * 300.00272 * 7 6 5 33 33 H 1.09001 * 109.46998 * 59.99868 * 7 6 5 34 34 H 0.96998 * 120.00192 * 359.97438 * 8 7 6 35 35 H 1.07998 * 120.25204 * 359.97438 * 10 9 8 36 36 H 1.08005 * 120.65653 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.42946 * 179.97438 * 12 11 10 38 38 H 0.97000 * 120.00065 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2411 0.9527 5 6 3.9078 2.4350 1.0330 6 6 5.0107 2.2537 2.0778 7 6 5.8475 3.5318 2.1632 8 7 6.9038 3.3580 3.1632 9 6 7.7948 4.3915 3.4184 10 6 7.6764 5.5942 2.7158 11 6 8.5674 6.6245 2.9718 12 6 9.5542 6.4285 3.9219 13 6 9.6215 5.1964 4.5950 14 6 10.6242 4.9816 5.5675 15 1 11.3352 5.7630 5.7916 16 6 10.6957 3.7557 6.2404 17 7 9.8351 2.8097 5.9686 18 14 12.0206 3.4721 7.5263 19 1 11.8753 4.4711 8.6153 20 1 11.8813 2.1041 8.0870 21 1 13.3586 3.6152 6.8983 22 7 8.7400 4.2279 4.3247 23 1 -0.5401 -0.9353 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9354 -0.0004 26 1 1.3856 2.1160 0.2661 27 1 2.4756 1.4867 -0.9926 28 1 3.2679 3.2692 1.3206 29 1 4.3581 2.6406 0.0618 30 1 5.6505 1.4196 1.7896 31 1 4.5608 2.0480 3.0490 32 1 6.2973 3.7372 1.1918 33 1 5.2079 4.3662 2.4510 34 1 6.9802 2.5210 3.6475 35 1 6.8972 5.7192 1.9785 36 1 8.4930 7.5618 2.4403 37 1 10.2636 7.2122 4.1435 38 1 9.8849 1.9603 6.4345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118542077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:12 Heat of formation + Delta-G solvation = -13.196645 kcal Electronic energy + Delta-G solvation = -18300.586700 eV Core-core repulsion = 15335.652390 eV Total energy + Delta-G solvation = -2964.934310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14648 -39.21921 -37.17065 -35.36980 -34.80535 -33.04777 -32.13973 -30.30808 -27.39749 -27.11666 -25.52549 -23.57350 -22.59577 -22.05090 -20.79096 -19.26844 -18.01259 -17.67976 -17.35026 -16.61063 -16.50474 -16.27734 -15.90802 -15.67121 -14.97180 -14.72404 -14.60843 -14.18972 -13.75691 -13.59885 -13.34551 -12.85504 -12.78107 -12.72191 -12.49639 -12.36639 -12.15263 -12.09856 -11.82624 -11.74111 -11.25684 -10.81908 -10.65212 -10.24482 -9.83148 -9.44256 -8.30141 -8.22148 -6.47496 1.07355 1.23276 1.35187 1.41702 1.53947 1.60074 2.25596 2.45193 2.93220 3.00987 3.95001 3.97169 4.07553 4.10468 4.18238 4.28442 4.39886 4.44145 4.53294 4.55745 4.60353 4.64892 4.79161 4.96734 4.99609 5.01486 5.07819 5.13183 5.18912 5.38656 5.65460 5.71885 5.72485 5.97277 6.07634 6.23124 6.24493 6.56470 6.83626 6.94985 7.21847 8.34950 8.51943 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.003155 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.424442 B = 8872.476451 C = 9770.748092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.175 4.175 3 C 0.083 3.917 4 O -0.409 6.409 5 C 0.071 3.929 6 C -0.118 4.118 7 C 0.146 3.854 8 N -0.737 5.737 9 C 0.392 3.608 10 C -0.367 4.367 11 C -0.030 4.030 12 C -0.344 4.344 13 C 0.257 3.743 14 C -0.472 4.472 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.753 5.753 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.259 1.259 22 N -0.567 5.567 23 H 0.116 0.884 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 -3.852 -9.624 17.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.007 3.993 4 O -0.329 6.329 5 C -0.006 4.006 6 C -0.156 4.156 7 C 0.022 3.978 8 N -0.372 5.372 9 C 0.151 3.849 10 C -0.392 4.392 11 C -0.054 4.054 12 C -0.367 4.367 13 C 0.130 3.870 14 C -0.504 4.504 15 H 0.105 0.895 16 C -0.197 4.197 17 N -0.375 5.375 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.194 1.194 21 H -0.184 1.184 22 N -0.290 5.290 23 H 0.135 0.865 24 H 0.126 0.874 25 H 0.129 0.871 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.068 -4.897 -9.182 17.499 hybrid contribution 0.567 0.517 0.140 0.780 sum -13.501 -4.379 -9.043 16.829 Atomic orbital electron populations 1.24061 0.95111 1.03418 0.98051 1.22822 0.96306 0.98028 1.02160 1.21701 0.88611 0.96471 0.92490 1.87862 1.45512 1.38022 1.61503 1.22341 0.92298 0.87135 0.98822 1.21508 0.96591 0.97394 1.00110 1.21058 0.88038 0.97406 0.91327 1.44303 1.32565 1.15327 1.45037 1.18992 0.88568 0.87325 0.89978 1.20972 1.09432 0.96154 1.12671 1.21028 0.92511 0.97585 0.94308 1.21703 1.06675 1.00084 1.08248 1.18701 0.90146 0.87338 0.90848 1.19921 1.12184 1.00375 1.17904 0.89467 1.26988 0.98544 0.94982 0.99222 1.70248 1.30562 1.03425 1.33280 0.85205 0.78103 0.78294 0.77685 1.18358 1.19354 1.18362 1.68177 1.07553 1.33086 1.20187 0.86550 0.87363 0.87119 0.91695 0.91352 0.91678 0.91621 0.91146 0.91197 0.92175 0.92198 0.77325 0.86108 0.85113 0.87885 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 14.31 67.78 0.97 -1.12 16 2 C -0.18 -2.81 9.89 25.65 0.25 -2.56 16 3 C 0.08 1.41 6.35 71.24 0.45 1.86 16 4 O -0.41 -9.38 10.33 -148.98 -1.54 -10.92 16 5 C 0.07 1.43 5.94 71.98 0.43 1.86 16 6 C -0.12 -2.92 5.70 30.60 0.17 -2.74 16 7 C 0.15 4.32 4.88 86.38 0.42 4.74 16 8 N -0.74 -30.02 5.72 -344.97 -1.97 -32.00 16 9 C 0.39 19.61 7.65 133.42 1.02 20.63 16 10 C -0.37 -16.66 9.34 22.73 0.21 -16.45 16 11 C -0.03 -1.38 10.15 22.39 0.23 -1.15 16 12 C -0.34 -17.89 9.83 22.87 0.22 -17.66 16 13 C 0.26 14.99 6.55 40.18 0.26 15.25 16 14 C -0.47 -26.72 9.14 23.46 0.21 -26.51 16 15 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 16 C 0.02 1.28 5.50 85.29 0.47 1.75 16 17 N -0.75 -41.74 11.46 21.84 0.25 -41.49 16 18 Si 0.99 39.35 29.56 68.60 2.03 41.38 16 19 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 N -0.57 -32.82 7.89 -186.58 -1.47 -34.29 16 23 H 0.12 1.11 8.06 -2.91 -0.02 1.08 16 24 H 0.11 1.08 7.90 -2.91 -0.02 1.06 16 25 H 0.11 1.84 8.06 -2.91 -0.02 1.82 16 26 H 0.06 0.93 7.86 -2.39 -0.02 0.91 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.71 7.92 -2.39 -0.02 1.69 16 33 H 0.06 1.70 7.92 -2.39 -0.02 1.68 16 34 H 0.39 16.34 8.59 -92.71 -0.80 15.55 16 35 H 0.12 4.63 6.68 -2.91 -0.02 4.61 16 36 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 38 H 0.28 13.86 8.29 -92.71 -0.77 13.09 16 Total: -1.00 -67.60 327.45 2.87 -64.73 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.24 Total: 34.69 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 5.33 Total: -22.10 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -3.19 Total: -107.77 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -1.54 Total: -10.92 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -67.60 2.87 -64.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118542077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.534 kcal (2) G-P(sol) polarization free energy of solvation -67.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds