Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38214 * 120.24974 * 2 1 4 4 N 1.32168 * 121.50340 * 179.72500 * 3 2 1 5 5 C 1.32029 * 122.06795 * 0.59030 * 4 3 2 6 6 O 1.35429 * 119.85512 * 179.70237 * 5 4 3 7 7 C 1.42900 * 117.00263 * 359.97438 * 6 5 4 8 8 F 1.39901 * 109.47070 * 59.99189 * 7 6 5 9 9 F 1.39890 * 109.47254 * 179.97438 * 7 6 5 10 10 F 1.39902 * 109.46706 * 300.00037 * 7 6 5 11 11 C 1.41359 * 120.29324 * 359.68442 * 5 4 3 12 12 C 1.40985 * 120.74286 * 180.02562 * 11 5 4 13 13 H 1.07997 * 120.00135 * 322.51339 * 12 11 5 14 14 C 1.39929 * 119.99953 * 142.51720 * 12 11 5 15 15 N 1.30904 * 119.99737 * 339.35932 * 14 12 11 16 16 Si 1.86794 * 120.00047 * 159.35679 * 14 12 11 17 17 H 1.48510 * 109.47038 * 89.99634 * 16 14 12 18 18 H 1.48498 * 109.47473 * 210.00077 * 16 14 12 19 19 H 1.48500 * 109.47277 * 330.00402 * 16 14 12 20 20 C 1.38828 * 120.24933 * 180.28254 * 2 1 3 21 21 O 1.35559 * 120.93854 * 359.97438 * 20 2 1 22 22 H 1.08994 * 109.46996 * 269.71923 * 1 2 3 23 23 H 1.08999 * 109.47138 * 149.71828 * 1 2 3 24 24 H 1.08994 * 109.47338 * 29.72249 * 1 2 3 25 25 H 1.07998 * 119.24568 * 0.02562 * 3 2 1 26 26 H 0.96998 * 119.99970 * 179.97438 * 15 14 12 27 27 H 0.96695 * 113.99751 * 90.00517 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2033 1.1939 0.0000 4 7 3.5246 1.2229 0.0054 5 6 4.2500 0.1197 -0.0004 6 8 5.6018 0.2016 -0.0006 7 6 6.1724 1.5117 0.0052 8 9 5.7542 2.1974 1.1507 9 9 7.5678 1.4126 0.0048 10 9 5.7534 2.2078 -1.1338 11 6 3.6218 -1.1467 -0.0062 12 6 4.3871 -2.3307 -0.0119 13 1 5.3033 -2.3788 -0.5816 14 6 3.9594 -3.4437 0.7205 15 7 3.1115 -3.2921 1.7062 16 14 4.5982 -5.1458 0.2914 17 1 5.8340 -5.4209 1.0677 18 1 3.5671 -6.1606 0.6262 19 1 4.9018 -5.2090 -1.1608 20 6 2.2064 -1.1992 -0.0059 21 8 1.5531 -2.3870 -0.0113 22 1 -0.3633 -0.0050 1.0276 23 1 -0.3633 -0.8874 -0.5182 24 1 -0.3634 0.8924 -0.5095 25 1 1.6551 2.1244 0.0004 26 1 2.8148 -4.0636 2.2137 27 1 1.3633 -2.7275 -0.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381656098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = -214.009267 kcal Electronic energy + Delta-G solvation = -20418.459236 eV Core-core repulsion = 16533.575446 eV Total energy + Delta-G solvation = -3884.883790 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.48960 -47.31164 -47.06935 -39.41087 -37.47911 -35.58901 -33.83183 -31.56239 -30.28346 -26.21794 -25.65652 -24.69393 -21.94787 -20.89249 -18.97919 -18.29857 -18.25966 -17.35143 -16.83894 -15.56227 -15.15872 -14.99826 -14.36323 -14.08984 -13.80722 -13.67227 -13.58205 -13.38078 -13.30523 -13.19485 -12.82129 -12.60630 -12.42344 -12.02292 -11.68546 -11.52789 -11.24345 -11.07135 -10.86871 -10.51383 -9.46246 -9.26111 -8.57022 -7.93306 -7.47269 -6.91405 -4.54156 2.31941 2.48973 2.51479 3.02491 3.03212 3.08528 3.80325 3.85912 4.42936 4.77247 4.85444 5.16510 5.40039 5.47149 5.86095 5.90968 6.20572 6.28925 6.51669 6.68213 6.97361 7.04065 7.28962 7.42403 7.76089 8.20949 8.36726 8.58180 8.93833 9.08696 10.05986 Molecular weight = 263.06amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.009520 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.248281 B = 2940.475870 C = 4196.992249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.147 4.147 3 C 0.009 3.991 4 N -0.506 5.506 5 C 0.184 3.816 6 O -0.292 6.292 7 C 0.606 3.394 8 F -0.170 7.170 9 F -0.154 7.154 10 F -0.172 7.172 11 C 0.071 3.929 12 C -0.448 4.448 13 H 0.088 0.912 14 C 0.085 3.915 15 N -0.743 5.743 16 Si 0.908 3.092 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 C 0.085 3.915 21 O -0.456 6.456 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.134 0.866 26 H 0.285 0.715 27 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.624 2.291 -3.190 3.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C -0.146 4.146 4 N -0.226 5.226 5 C 0.004 3.996 6 O -0.207 6.207 7 C 0.514 3.486 8 F -0.152 7.152 9 F -0.136 7.136 10 F -0.154 7.154 11 C 0.065 3.935 12 C -0.476 4.476 13 H 0.106 0.894 14 C -0.139 4.139 15 N -0.364 5.364 16 Si 0.732 3.268 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.184 1.184 20 C 0.032 3.968 21 O -0.261 6.261 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.151 0.849 26 H 0.096 0.904 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.139 2.869 -2.350 3.711 hybrid contribution -0.005 -1.248 -0.517 1.351 sum -0.143 1.620 -2.867 3.297 Atomic orbital electron populations 1.20392 0.91864 1.01057 1.01326 1.20698 0.96224 0.93804 1.04285 1.20996 0.87273 0.95826 1.10485 1.66554 1.09706 1.30310 1.15986 1.19443 0.79240 0.90647 1.10271 1.86490 1.21202 1.23380 1.89660 1.19357 0.75267 0.79171 0.74780 1.93240 1.90136 1.80544 1.51255 1.93198 1.27853 1.96023 1.96498 1.93230 1.90143 1.80166 1.51878 1.17736 0.91526 0.90121 0.94085 1.19228 1.07791 0.95079 1.25485 0.89445 1.25793 0.93771 1.01009 0.93334 1.69738 1.21897 1.33395 1.11364 0.86310 0.79262 0.80848 0.80376 1.19449 1.19967 1.18377 1.18009 0.88511 0.83972 1.06267 1.84904 1.76471 1.34992 1.29727 0.92177 0.92388 0.92807 0.84899 0.90412 0.79222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 9.83 36.01 0.35 -1.14 15 2 C -0.15 -3.14 5.90 -104.41 -0.62 -3.75 15 3 C 0.01 0.20 10.82 -17.42 -0.19 0.01 15 4 N -0.51 -12.14 8.06 -12.72 -0.10 -12.24 15 5 C 0.18 4.67 7.23 -16.28 -0.12 4.55 15 6 O -0.29 -7.03 9.80 -17.98 -0.18 -7.20 15 7 C 0.61 12.60 3.50 101.05 0.35 12.95 15 8 F -0.17 -3.58 16.55 2.25 0.04 -3.54 15 9 F -0.15 -2.84 17.53 2.25 0.04 -2.80 15 10 F -0.17 -3.51 16.55 2.25 0.04 -3.47 15 11 C 0.07 1.82 5.40 -106.37 -0.57 1.25 15 12 C -0.45 -11.41 8.47 -37.91 -0.32 -11.73 15 13 H 0.09 2.20 7.91 -52.49 -0.41 1.78 15 14 C 0.08 2.04 4.45 -17.31 -0.08 1.96 15 15 N -0.74 -18.63 11.19 55.55 0.62 -18.01 15 16 Si 0.91 17.89 29.61 -169.99 -5.03 12.86 15 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 20 C 0.09 2.01 6.21 -38.07 -0.24 1.77 15 21 O -0.46 -9.97 9.61 -18.37 -0.18 -10.14 15 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.06 0.91 7.60 -51.93 -0.39 0.52 15 24 H 0.05 0.77 8.09 -51.93 -0.42 0.35 15 25 H 0.13 2.48 8.06 -52.49 -0.42 2.06 15 26 H 0.28 6.56 8.30 -40.82 -0.34 6.22 15 27 H 0.36 6.23 9.06 45.56 0.41 6.64 15 LS Contribution 259.21 15.07 3.91 3.91 Total: -1.00 -28.03 259.21 -3.07 -31.10 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -0.80 Total: 3.69 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.42 Total: 5.87 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.52 Total: -30.25 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.35 Total: -17.34 kcal Atomic # 9 Polarization: -9.93 SS G_CDS: 0.11 Total: -9.81 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.03 -3.07 -31.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381656098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.913 kcal (2) G-P(sol) polarization free energy of solvation -28.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds