Wall clock time and date at job start Mon Mar 30 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38214 * 120.24974 * 2 1 4 4 N 1.32168 * 121.50340 * 179.72500 * 3 2 1 5 5 C 1.32029 * 122.06795 * 0.59030 * 4 3 2 6 6 O 1.35429 * 119.85512 * 179.70237 * 5 4 3 7 7 C 1.42900 * 117.00263 * 359.97438 * 6 5 4 8 8 F 1.39901 * 109.47070 * 59.99189 * 7 6 5 9 9 F 1.39890 * 109.47254 * 179.97438 * 7 6 5 10 10 F 1.39902 * 109.46706 * 300.00037 * 7 6 5 11 11 C 1.41359 * 120.29324 * 359.68442 * 5 4 3 12 12 C 1.40985 * 120.74286 * 180.02562 * 11 5 4 13 13 H 1.07997 * 120.00135 * 322.51339 * 12 11 5 14 14 C 1.39929 * 119.99953 * 142.51720 * 12 11 5 15 15 N 1.30904 * 119.99737 * 339.35932 * 14 12 11 16 16 Si 1.86794 * 120.00047 * 159.35679 * 14 12 11 17 17 H 1.48510 * 109.47038 * 89.99634 * 16 14 12 18 18 H 1.48498 * 109.47473 * 210.00077 * 16 14 12 19 19 H 1.48500 * 109.47277 * 330.00402 * 16 14 12 20 20 C 1.38828 * 120.24933 * 180.28254 * 2 1 3 21 21 O 1.35559 * 120.93854 * 359.97438 * 20 2 1 22 22 H 1.08994 * 109.46996 * 269.71923 * 1 2 3 23 23 H 1.08999 * 109.47138 * 149.71828 * 1 2 3 24 24 H 1.08994 * 109.47338 * 29.72249 * 1 2 3 25 25 H 1.07998 * 119.24568 * 0.02562 * 3 2 1 26 26 H 0.96998 * 119.99970 * 179.97438 * 15 14 12 27 27 H 0.96695 * 113.99751 * 90.00517 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2033 1.1939 0.0000 4 7 3.5246 1.2229 0.0054 5 6 4.2500 0.1197 -0.0004 6 8 5.6018 0.2016 -0.0006 7 6 6.1724 1.5117 0.0052 8 9 5.7542 2.1974 1.1507 9 9 7.5678 1.4126 0.0048 10 9 5.7534 2.2078 -1.1338 11 6 3.6218 -1.1467 -0.0062 12 6 4.3871 -2.3307 -0.0119 13 1 5.3033 -2.3788 -0.5816 14 6 3.9594 -3.4437 0.7205 15 7 3.1115 -3.2921 1.7062 16 14 4.5982 -5.1458 0.2914 17 1 5.8340 -5.4209 1.0677 18 1 3.5671 -6.1606 0.6262 19 1 4.9018 -5.2090 -1.1608 20 6 2.2064 -1.1992 -0.0059 21 8 1.5531 -2.3870 -0.0113 22 1 -0.3633 -0.0050 1.0276 23 1 -0.3633 -0.8874 -0.5182 24 1 -0.3634 0.8924 -0.5095 25 1 1.6551 2.1244 0.0004 26 1 2.8148 -4.0636 2.2137 27 1 1.3633 -2.7275 -0.8962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381656098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:23 Heat of formation + Delta-G solvation = -233.919731 kcal Electronic energy + Delta-G solvation = -20419.322618 eV Core-core repulsion = 16533.575446 eV Total energy + Delta-G solvation = -3885.747173 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 263.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.13691 -48.92735 -48.74578 -41.18293 -39.23961 -37.34127 -35.60918 -33.17859 -32.09568 -27.84504 -27.43370 -26.35914 -23.71449 -22.61906 -20.72059 -19.96771 -19.93816 -19.15205 -18.55518 -17.29627 -16.89091 -16.72049 -16.08540 -15.70098 -15.47637 -15.31472 -15.23275 -15.07198 -14.95710 -14.88678 -14.46782 -14.22930 -13.94597 -13.72975 -13.28702 -13.05994 -12.81447 -12.72905 -12.61478 -12.06881 -11.19473 -11.00898 -10.36072 -9.71142 -9.23064 -8.68290 -6.41673 0.54339 0.72914 0.80710 1.42370 1.46914 1.55790 2.08935 2.22942 2.66681 3.11354 3.14666 3.40550 3.68480 3.77462 4.33112 4.48540 4.58971 4.91857 5.03790 5.11069 5.23167 5.32506 5.59754 5.74096 5.96087 6.36599 6.56971 6.77016 7.27657 7.31103 8.31507 Molecular weight = 263.06amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.009520 C = 0.006670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.248281 B = 2940.475870 C = 4196.992249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.151 4.151 3 C 0.013 3.987 4 N -0.518 5.518 5 C 0.157 3.843 6 O -0.310 6.310 7 C 0.611 3.389 8 F -0.171 7.171 9 F -0.139 7.139 10 F -0.169 7.169 11 C 0.038 3.962 12 C -0.482 4.482 13 H 0.075 0.925 14 C 0.054 3.946 15 N -0.780 5.780 16 Si 0.978 3.022 17 H -0.270 1.270 18 H -0.263 1.263 19 H -0.258 1.258 20 C 0.081 3.919 21 O -0.462 6.462 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.084 0.916 25 H 0.169 0.831 26 H 0.291 0.709 27 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 2.258 -3.575 4.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.153 4.153 3 C -0.143 4.143 4 N -0.238 5.238 5 C -0.021 4.021 6 O -0.226 6.226 7 C 0.520 3.480 8 F -0.154 7.154 9 F -0.121 7.121 10 F -0.151 7.151 11 C 0.033 3.967 12 C -0.510 4.510 13 H 0.093 0.907 14 C -0.166 4.166 15 N -0.402 5.402 16 Si 0.799 3.201 17 H -0.195 1.195 18 H -0.188 1.188 19 H -0.181 1.181 20 C 0.028 3.972 21 O -0.270 6.270 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.186 0.814 26 H 0.101 0.899 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -1.294 2.841 -2.749 4.160 hybrid contribution 0.285 -1.088 -0.415 1.199 sum -1.009 1.753 -3.164 3.755 Atomic orbital electron populations 1.20447 0.88305 1.03140 1.02163 1.21154 0.98822 0.92685 1.02676 1.21756 0.86875 0.97566 1.08127 1.66627 1.10743 1.29973 1.16487 1.19619 0.79684 0.91077 1.11730 1.86426 1.21158 1.25157 1.89847 1.19213 0.75700 0.78371 0.74753 1.93229 1.90283 1.80436 1.51404 1.93227 1.26504 1.95901 1.96436 1.93228 1.90232 1.79941 1.51692 1.18184 0.92976 0.90588 0.94945 1.19308 1.08221 0.96399 1.27089 0.90666 1.26480 0.93645 1.04026 0.92481 1.69778 1.23547 1.34591 1.12302 0.85272 0.78647 0.76261 0.79953 1.19541 1.18768 1.18135 1.18288 0.88163 0.85243 1.05485 1.84832 1.76041 1.34708 1.31399 0.91727 0.91396 0.89747 0.81392 0.89883 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.50 9.83 71.24 0.70 -1.80 15 2 C -0.15 -6.12 5.90 -19.73 -0.12 -6.23 15 3 C 0.01 0.53 10.82 84.64 0.92 1.44 15 4 N -0.52 -24.51 8.06 -307.26 -2.48 -26.99 15 5 C 0.16 8.06 7.23 85.43 0.62 8.67 15 6 O -0.31 -15.22 9.80 -87.25 -0.86 -16.07 15 7 C 0.61 25.39 3.50 113.37 0.40 25.78 15 8 F -0.17 -7.20 16.55 44.97 0.74 -6.45 15 9 F -0.14 -5.07 17.53 44.97 0.79 -4.28 15 10 F -0.17 -6.82 16.55 44.97 0.74 -6.08 15 11 C 0.04 2.00 5.40 -21.00 -0.11 1.89 15 12 C -0.48 -25.14 8.47 23.35 0.20 -24.94 15 13 H 0.08 3.94 7.91 -2.91 -0.02 3.92 15 14 C 0.05 2.62 4.45 85.24 0.38 2.99 15 15 N -0.78 -39.29 11.19 21.83 0.24 -39.04 15 16 Si 0.98 36.73 29.61 68.60 2.03 38.76 15 17 H -0.27 -10.11 7.11 99.48 0.71 -9.40 15 18 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 19 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 20 C 0.08 3.79 6.21 23.25 0.14 3.94 15 21 O -0.46 -19.83 9.61 -88.66 -0.85 -20.68 15 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 23 H 0.07 1.91 7.60 -2.39 -0.02 1.89 15 24 H 0.08 2.03 8.09 -2.39 -0.02 2.01 15 25 H 0.17 5.65 8.06 -2.91 -0.02 5.63 15 26 H 0.29 13.35 8.30 -92.71 -0.77 12.58 15 27 H 0.37 12.70 9.06 -74.06 -0.67 12.03 15 Total: -1.00 -59.96 259.21 4.07 -55.89 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.58 Total: 13.21 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 3.12 Total: 11.74 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -2.23 Total: -66.03 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -1.71 Total: -36.76 kcal Atomic # 9 Polarization: -19.09 SS G_CDS: 2.28 Total: -16.81 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -59.96 4.07 -55.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381656098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.025 kcal (2) G-P(sol) polarization free energy of solvation -59.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds