Wall clock time and date at job start Mon Mar 30 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20761 * 119.99909 * 2 1 4 4 C 1.50702 * 120.00152 * 180.02562 * 2 1 3 5 5 H 1.09000 * 109.47285 * 154.99818 * 4 2 1 6 6 Cl 1.80299 * 109.47338 * 34.99357 * 4 2 1 7 7 C 1.50707 * 109.46613 * 274.99624 * 4 2 1 8 8 C 1.38726 * 119.35281 * 65.00211 * 7 4 2 9 9 C 1.36422 * 121.33118 * 179.97438 * 8 7 4 10 10 C 1.40850 * 119.95725 * 0.02562 * 9 8 7 11 11 C 1.40781 * 120.61165 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00170 * 205.22218 * 11 10 9 13 13 C 1.40262 * 120.00182 * 25.22581 * 11 10 9 14 14 N 1.30653 * 120.00014 * 26.31066 * 13 11 10 15 15 Si 1.86799 * 120.00122 * 206.30923 * 13 11 10 16 16 H 1.48503 * 109.47116 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47168 * 299.99918 * 15 13 11 18 18 H 1.48496 * 109.47251 * 59.99954 * 15 13 11 19 19 C 1.46499 * 118.76757 * 0.27538 * 10 9 8 20 20 C 1.43201 * 120.63313 * 179.72365 * 19 10 9 21 21 N 6.83664 * 132.59734 * 119.85083 * 2 1 3 22 22 C 1.38018 * 119.35425 * 245.02023 * 7 4 2 23 23 H 1.09000 * 109.46675 * 239.99627 * 1 2 3 24 24 H 1.08994 * 109.47065 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46936 * 120.00167 * 1 2 3 26 26 H 1.07995 * 119.33039 * 0.02562 * 8 7 4 27 27 H 1.07991 * 120.01901 * 180.02562 * 9 8 7 28 28 H 0.97001 * 119.99243 * 5.88792 * 14 13 11 29 29 H 1.08007 * 120.04201 * 359.97438 * 22 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 1 3.2488 -1.1539 -0.4348 6 17 1.3552 -2.5215 -0.9760 7 6 2.4045 -1.8025 1.4147 8 6 1.2703 -2.1631 2.1275 9 6 1.3539 -2.6189 3.4106 10 6 2.6105 -2.7303 4.0370 11 6 2.7128 -3.1995 5.3603 12 1 3.5586 -2.9170 5.9696 13 6 1.7163 -4.0341 5.8875 14 7 1.0024 -4.7834 5.0901 15 14 1.4099 -4.0742 7.7298 16 1 0.3132 -5.0299 8.0284 17 1 2.6469 -4.5073 8.4280 18 1 1.0265 -2.7180 8.1975 19 6 3.8085 -2.3436 3.2877 20 6 5.1056 -2.4351 3.8876 21 7 6.1344 -2.5050 4.3649 22 6 3.6622 -1.8901 1.9765 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 0.3017 -2.0821 1.6567 27 1 0.4571 -2.8942 3.9456 28 1 1.2170 -4.8276 4.1451 29 1 4.5316 -1.6041 1.4031 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396146677.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:00 Heat of formation + Delta-G solvation = -33.332021 kcal Electronic energy + Delta-G solvation = -16625.056947 eV Core-core repulsion = 13730.573815 eV Total energy + Delta-G solvation = -2894.483132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 263.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82436 -39.63878 -37.28892 -36.97226 -36.16000 -33.14802 -31.83655 -31.05332 -29.09595 -26.29597 -24.32129 -22.79026 -20.90877 -20.16173 -18.63934 -17.14398 -16.96134 -16.82468 -16.26451 -16.09616 -15.55431 -14.98121 -14.76172 -14.41049 -14.18133 -14.15136 -13.75542 -13.48888 -13.26086 -13.09243 -12.95712 -12.66336 -12.60310 -12.01403 -11.99402 -11.86719 -11.63566 -11.33025 -11.07262 -10.66399 -9.77593 -9.65364 -9.34499 -6.73358 0.25894 0.39974 0.91317 1.32897 1.50880 1.62408 1.79732 1.92298 2.21140 2.23415 2.55057 2.98955 3.42663 3.44829 3.82811 3.83462 4.12920 4.26635 4.39992 4.63685 4.66933 4.85586 4.88742 5.13588 5.21194 5.43519 5.52918 5.57610 5.74511 5.92124 6.09240 6.30791 6.45691 6.56358 6.84426 7.77492 Molecular weight = 263.05amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.006253 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.990463 B = 4476.897830 C = 5050.938483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.373 3.627 3 O -0.484 6.484 4 C 0.022 3.978 5 H 0.125 0.875 6 Cl -0.160 7.160 7 C -0.242 4.242 8 C -0.025 4.025 9 C -0.223 4.223 10 C 0.116 3.884 11 C -0.497 4.497 12 H 0.070 0.930 13 C 0.014 3.986 14 N -0.766 5.766 15 Si 1.108 2.892 16 H -0.260 1.260 17 H -0.268 1.268 18 H -0.257 1.257 19 C -0.211 4.211 20 C 0.302 3.698 21 N -0.525 5.525 22 C 0.012 3.988 23 H 0.107 0.893 24 H 0.092 0.908 25 H 0.117 0.883 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.298 0.702 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.264 3.155 -7.145 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.250 3.750 3 O -0.359 6.359 4 C -0.022 4.022 5 H 0.142 0.858 6 Cl -0.134 7.134 7 C -0.244 4.244 8 C -0.044 4.044 9 C -0.243 4.243 10 C 0.110 3.890 11 C -0.523 4.523 12 H 0.088 0.912 13 C -0.209 4.209 14 N -0.385 5.385 15 Si 0.925 3.075 16 H -0.184 1.184 17 H -0.193 1.193 18 H -0.182 1.182 19 C -0.217 4.217 20 C -0.007 4.007 21 N -0.204 5.204 22 C -0.009 4.009 23 H 0.125 0.875 24 H 0.111 0.889 25 H 0.136 0.864 26 H 0.151 0.849 27 H 0.129 0.871 28 H 0.111 0.889 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.432 2.810 -5.406 8.860 hybrid contribution 0.974 0.375 -1.377 1.728 sum -5.458 3.185 -6.783 9.271 Atomic orbital electron populations 1.22436 0.91092 1.06089 1.06504 1.24983 0.93894 0.88158 0.67978 1.90425 1.73078 1.34810 1.37626 1.23227 0.98690 0.88216 0.92058 0.85750 1.98717 1.78669 1.61759 1.74212 1.18371 0.93486 1.18079 0.94494 1.20545 0.97807 0.92998 0.93010 1.20820 0.95776 1.10709 0.96949 1.18795 0.90501 0.88154 0.91563 1.21023 1.08428 1.25212 0.97667 0.91228 1.28451 0.90282 0.90365 1.11822 1.70502 1.33304 1.25298 1.09440 0.83079 0.78273 0.79064 0.67089 1.18430 1.19317 1.18153 1.16890 0.84940 1.24210 0.95652 1.25945 0.92390 0.90813 0.91570 1.81031 1.13425 1.15391 1.10573 1.20639 0.96756 0.91771 0.91690 0.87524 0.88892 0.86445 0.84879 0.87053 0.88869 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.01 9.38 71.24 0.67 -3.34 15 2 C 0.37 10.01 6.18 29.10 0.18 10.19 15 3 O -0.48 -16.10 17.83 -1.45 -0.03 -16.12 15 4 C 0.02 0.61 3.35 29.10 0.10 0.71 15 5 H 0.12 3.20 7.84 -2.39 -0.02 3.18 15 6 Cl -0.16 -3.96 26.64 -2.72 -0.07 -4.03 15 7 C -0.24 -8.10 4.85 -19.80 -0.10 -8.20 15 8 C -0.02 -0.85 8.50 21.96 0.19 -0.66 15 9 C -0.22 -9.13 7.94 22.49 0.18 -8.95 15 10 C 0.12 5.29 5.46 -19.86 -0.11 5.18 15 11 C -0.50 -23.68 8.50 23.38 0.20 -23.48 15 12 H 0.07 3.46 7.46 -2.91 -0.02 3.44 15 13 C 0.01 0.62 4.93 85.36 0.42 1.04 15 14 N -0.77 -34.61 12.32 21.88 0.27 -34.34 15 15 Si 1.11 37.75 30.01 68.60 2.06 39.81 15 16 H -0.26 -8.51 7.11 99.48 0.71 -7.80 15 17 H -0.27 -8.97 7.11 99.48 0.71 -8.26 15 18 H -0.26 -8.26 7.11 99.48 0.71 -7.56 15 19 C -0.21 -9.25 5.94 -19.57 -0.12 -9.37 15 20 C 0.30 14.00 14.32 88.33 1.27 15.27 15 21 N -0.52 -25.19 18.54 19.01 0.35 -24.84 15 22 C 0.01 0.47 9.37 22.52 0.21 0.68 15 23 H 0.11 2.00 6.07 -2.39 -0.01 1.99 15 24 H 0.09 1.65 8.12 -2.39 -0.02 1.63 15 25 H 0.12 1.86 7.35 -2.39 -0.02 1.84 15 26 H 0.13 3.72 6.03 -2.91 -0.02 3.70 15 27 H 0.11 4.65 6.54 -2.92 -0.02 4.63 15 28 H 0.30 13.77 6.76 -92.71 -0.63 13.15 15 29 H 0.12 4.07 7.92 -2.91 -0.02 4.05 15 Total: -1.00 -53.49 279.47 7.01 -46.48 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 1.34 Total: 13.99 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 3.09 Total: -20.95 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: 0.62 Total: -59.17 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.03 Total: -16.12 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.06 Total: 39.81 kcal Atomic # 17 Polarization: -3.96 SS G_CDS: -0.07 Total: -4.03 kcal Total: -53.49 7.01 -46.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396146677.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.143 kcal (2) G-P(sol) polarization free energy of solvation -53.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds