Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.36345 * 125.63206 * 269.69405 * 11 10 9 13 13 C 1.34851 * 108.21376 * 179.82754 * 12 11 10 14 14 C 1.40884 * 107.41937 * 0.42914 * 13 12 11 15 15 C 1.50703 * 126.29055 * 179.73703 * 14 13 12 16 16 H 1.09008 * 109.46695 * 204.99404 * 15 14 13 17 17 O 1.42892 * 109.47138 * 324.99223 * 15 14 13 18 18 C 1.52994 * 109.47341 * 84.99957 * 15 14 13 19 19 F 1.39901 * 109.47542 * 59.99689 * 18 15 14 20 20 F 1.39900 * 109.47460 * 179.97438 * 18 15 14 21 21 F 1.39902 * 109.47075 * 299.99872 * 18 15 14 22 22 C 1.34848 * 107.41730 * 359.73227 * 14 13 12 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 27 27 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 28 28 H 1.07997 * 125.89333 * 0.02562 * 12 11 10 29 29 H 1.08009 * 126.28682 * 180.16413 * 13 12 11 30 30 H 0.96703 * 113.99645 * 60.00667 * 17 15 14 31 31 H 1.08001 * 125.89279 * 180.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0077 12 6 1.1254 -5.6201 1.1186 13 6 0.4752 -6.7319 0.7193 14 6 0.4692 -6.7341 -0.6895 15 6 -0.1420 -7.7874 -1.5773 16 1 0.3592 -7.7822 -2.5453 17 8 0.0112 -9.0710 -0.9685 18 6 -1.6300 -7.4896 -1.7720 19 9 -1.7801 -6.2328 -2.3681 20 9 -2.1973 -8.4670 -2.5966 21 9 -2.2734 -7.4962 -0.5297 22 6 1.1108 -5.6205 -1.0976 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.8678 -3.6059 -0.8902 27 1 2.8760 -3.6028 0.8897 28 1 1.3053 -5.3247 2.1417 29 1 0.0426 -7.4849 1.3616 30 1 -0.4110 -9.1482 -0.1019 31 1 1.2773 -5.3254 -2.1231 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132421478.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = -166.072659 kcal Electronic energy + Delta-G solvation = -19818.057655 eV Core-core repulsion = 16071.085646 eV Total energy + Delta-G solvation = -3746.972008 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.087 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.94711 -47.48035 -47.42462 -40.94685 -37.31684 -34.21264 -32.36059 -30.41867 -28.78378 -27.48271 -24.88226 -23.21285 -21.58138 -19.86664 -19.80196 -18.57852 -18.35524 -18.07028 -17.17953 -16.34526 -14.97587 -14.86792 -14.74657 -14.31122 -14.10572 -13.99937 -13.86305 -13.83652 -13.59918 -13.56574 -13.20319 -12.90574 -12.59359 -12.27244 -11.95536 -11.59027 -11.40294 -11.10068 -10.75465 -10.56100 -10.24711 -9.95595 -9.41642 -8.55594 -8.19152 -7.87810 -6.18935 -4.25270 2.43080 2.81996 3.18809 3.20353 3.27957 3.30857 3.44572 3.79153 4.04517 4.14050 4.31565 4.54581 5.02252 5.07162 5.17337 5.40761 5.50276 5.57717 5.84671 6.02609 6.35293 6.40040 6.49138 7.16045 7.19197 7.35359 7.37609 7.61827 7.66714 7.83437 8.12115 8.80939 9.40745 10.92037 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.004441 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.518389 B = 6303.663844 C = 6751.624296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.101 3.899 11 N -0.424 5.424 12 C -0.004 4.004 13 C -0.190 4.190 14 C -0.246 4.246 15 C 0.163 3.837 16 H 0.137 0.863 17 O -0.531 6.531 18 C 0.419 3.581 19 F -0.175 7.175 20 F -0.186 7.186 21 F -0.182 7.182 22 C 0.033 3.967 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.131 0.869 30 H 0.384 0.616 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -15.002 -1.539 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.019 4.019 11 N -0.095 5.095 12 C -0.135 4.135 13 C -0.213 4.213 14 C -0.253 4.253 15 C 0.101 3.899 16 H 0.155 0.845 17 O -0.336 6.336 18 C 0.364 3.636 19 F -0.156 7.156 20 F -0.168 7.168 21 F -0.163 7.163 22 C -0.102 4.102 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.178 0.822 29 H 0.149 0.851 30 H 0.233 0.767 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.288 -14.647 -2.060 14.794 hybrid contribution -0.314 1.277 0.491 1.403 sum -0.026 -13.370 -1.569 13.462 Atomic orbital electron populations 1.69982 1.06171 1.26997 1.49441 1.25015 0.94865 0.99504 0.94735 0.86450 0.79989 0.83287 0.77787 1.19603 1.20813 1.20824 1.21036 0.93073 0.90344 1.52533 0.92213 1.19451 0.94017 0.90522 0.98562 1.22444 0.95776 0.80777 1.02908 1.44668 1.41217 1.18266 1.05360 1.21796 1.05016 0.94609 0.92112 1.20415 1.07484 1.00140 0.93298 1.19304 1.12237 0.99234 0.94561 1.21041 0.86547 0.83523 0.98811 0.84507 1.86620 1.78941 1.29863 1.38210 1.21816 0.93238 0.74513 0.73989 1.93213 1.96524 1.41993 1.83915 1.93172 1.87469 1.63085 1.73061 1.93162 1.84305 1.96167 1.42685 1.21526 1.02807 0.93384 0.92447 0.92679 0.95796 0.95729 0.90173 0.90111 0.82223 0.85101 0.76682 0.82135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.05 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.01 0.29 5.30 -27.88 -0.15 0.14 16 10 C 0.10 1.88 6.03 -4.04 -0.02 1.86 16 11 N -0.42 -7.33 2.75 -117.13 -0.32 -7.65 16 12 C 0.00 -0.06 11.43 -16.75 -0.19 -0.26 16 13 C -0.19 -2.76 10.10 -39.78 -0.40 -3.16 16 14 C -0.25 -3.60 4.68 -104.82 -0.49 -4.09 16 15 C 0.16 2.01 3.44 -27.88 -0.10 1.92 16 16 H 0.14 1.46 8.14 -51.92 -0.42 1.04 16 17 O -0.53 -6.16 13.17 -35.23 -0.46 -6.62 16 18 C 0.42 5.67 2.84 37.15 0.11 5.78 16 19 F -0.18 -2.70 17.02 2.25 0.04 -2.67 16 20 F -0.19 -2.47 17.26 2.25 0.04 -2.43 16 21 F -0.18 -2.58 16.51 2.25 0.04 -2.54 16 22 C 0.03 0.53 11.35 -16.75 -0.19 0.34 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.13 1.57 7.70 -52.48 -0.40 1.17 16 30 H 0.38 3.44 7.94 45.56 0.36 3.80 16 31 H 0.16 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 289.12 15.07 4.36 4.36 Total: -1.00 -30.11 289.12 -4.99 -35.10 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -2.54 Total: 2.21 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.85 Total: -10.24 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.41 Total: -32.81 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.46 Total: -6.62 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.11 Total: -7.64 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.11 -4.99 -35.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132421478.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.974 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds