Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.36345 * 125.63206 * 269.69405 * 11 10 9 13 13 C 1.34851 * 108.21376 * 179.82754 * 12 11 10 14 14 C 1.40884 * 107.41937 * 0.42914 * 13 12 11 15 15 C 1.50703 * 126.29055 * 179.73703 * 14 13 12 16 16 H 1.09008 * 109.46695 * 204.99404 * 15 14 13 17 17 O 1.42892 * 109.47138 * 324.99223 * 15 14 13 18 18 C 1.52994 * 109.47341 * 84.99957 * 15 14 13 19 19 F 1.39901 * 109.47542 * 59.99689 * 18 15 14 20 20 F 1.39900 * 109.47460 * 179.97438 * 18 15 14 21 21 F 1.39902 * 109.47075 * 299.99872 * 18 15 14 22 22 C 1.34848 * 107.41730 * 359.73227 * 14 13 12 23 23 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 26 26 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 27 27 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 28 28 H 1.07997 * 125.89333 * 0.02562 * 12 11 10 29 29 H 1.08009 * 126.28682 * 180.16413 * 13 12 11 30 30 H 0.96703 * 113.99645 * 60.00667 * 17 15 14 31 31 H 1.08001 * 125.89279 * 180.02562 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0077 12 6 1.1254 -5.6201 1.1186 13 6 0.4752 -6.7319 0.7193 14 6 0.4692 -6.7341 -0.6895 15 6 -0.1420 -7.7874 -1.5773 16 1 0.3592 -7.7822 -2.5453 17 8 0.0112 -9.0710 -0.9685 18 6 -1.6300 -7.4896 -1.7720 19 9 -1.7801 -6.2328 -2.3681 20 9 -2.1973 -8.4670 -2.5966 21 9 -2.2734 -7.4962 -0.5297 22 6 1.1108 -5.6205 -1.0976 23 1 -0.4850 0.8401 0.0004 24 1 0.6281 -2.5552 0.8979 25 1 0.6206 -2.5586 -0.8820 26 1 2.8678 -3.6059 -0.8902 27 1 2.8760 -3.6028 0.8897 28 1 1.3053 -5.3247 2.1417 29 1 0.0426 -7.4849 1.3616 30 1 -0.4110 -9.1482 -0.1019 31 1 1.2773 -5.3254 -2.1231 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132421478.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = -184.694355 kcal Electronic energy + Delta-G solvation = -19818.865152 eV Core-core repulsion = 16071.085646 eV Total energy + Delta-G solvation = -3747.779506 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 263.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.05496 -48.57600 -48.56344 -42.16274 -38.30827 -35.97191 -34.04990 -31.69642 -30.26729 -28.70855 -26.60145 -24.39817 -23.25780 -21.10804 -20.97767 -19.63299 -19.46827 -19.16699 -18.81095 -17.93767 -16.63616 -16.20830 -15.87981 -15.45421 -15.39630 -15.22536 -15.16487 -14.98292 -14.72792 -14.70091 -14.40813 -14.37865 -14.23530 -13.63327 -13.26078 -13.10914 -12.88956 -12.65409 -12.44621 -12.04804 -11.77145 -11.54955 -11.39858 -10.65009 -9.47828 -9.08139 -8.27225 -6.40922 1.24557 1.40173 1.41077 1.53808 1.66369 2.05819 2.16156 2.40272 2.78415 2.99677 3.07714 3.07886 3.55616 3.89884 4.03864 4.15920 4.23563 4.42203 4.47077 4.70115 4.70802 5.15640 5.30721 5.35584 5.44904 5.69447 6.01088 6.03990 6.31548 6.41411 6.49842 6.76769 7.30494 8.84971 Molecular weight = 263.09amu Principal moments of inertia in cm(-1) A = 0.032952 B = 0.004441 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.518389 B = 6303.663844 C = 6751.624296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.020 3.980 10 C 0.118 3.882 11 N -0.439 5.439 12 C -0.026 4.026 13 C -0.188 4.188 14 C -0.243 4.243 15 C 0.173 3.827 16 H 0.157 0.843 17 O -0.531 6.531 18 C 0.419 3.581 19 F -0.189 7.189 20 F -0.184 7.184 21 F -0.187 7.187 22 C 0.012 3.988 23 H 0.264 0.736 24 H -0.009 1.009 25 H -0.009 1.009 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.173 0.827 29 H 0.157 0.843 30 H 0.396 0.604 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -15.699 -1.550 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.018 4.018 10 C -0.003 4.003 11 N -0.111 5.111 12 C -0.156 4.156 13 C -0.212 4.212 14 C -0.250 4.250 15 C 0.111 3.889 16 H 0.174 0.826 17 O -0.338 6.338 18 C 0.364 3.636 19 F -0.171 7.171 20 F -0.165 7.165 21 F -0.168 7.168 22 C -0.122 4.122 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.190 0.810 29 H 0.175 0.825 30 H 0.247 0.753 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.515 -15.379 -2.062 15.591 hybrid contribution -0.765 1.398 0.509 1.673 sum 0.750 -13.982 -1.552 14.088 Atomic orbital electron populations 1.70128 1.08114 1.27977 1.51069 1.26003 0.95646 1.03646 0.94355 0.85322 0.79287 0.78369 0.77613 1.17890 1.20655 1.20621 1.21534 0.93953 0.91280 1.51375 0.90813 1.19256 0.94377 0.92762 0.95357 1.22055 0.94271 0.79658 1.04283 1.44597 1.42247 1.18033 1.06271 1.22232 1.05605 0.95169 0.92559 1.20803 1.06503 1.00140 0.93741 1.19584 1.11222 0.99183 0.95004 1.21036 0.85453 0.83127 0.99326 0.82595 1.86620 1.78994 1.29064 1.39132 1.22028 0.93874 0.73966 0.73697 1.93188 1.96641 1.43059 1.84179 1.93176 1.87516 1.62832 1.72982 1.93151 1.84547 1.96151 1.42977 1.21945 1.03391 0.93939 0.92906 0.92677 0.99016 0.99016 0.88769 0.88717 0.80991 0.82528 0.75311 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.29 21.45 0.28 -55.39 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -28.75 9.11 25.60 0.23 -28.51 16 8 H 0.07 3.61 7.74 -2.92 -0.02 3.59 16 9 C 0.02 1.00 5.30 29.85 0.16 1.16 16 10 C 0.12 4.34 6.03 86.38 0.52 4.86 16 11 N -0.44 -14.91 2.75 -524.48 -1.44 -16.35 16 12 C -0.03 -0.79 11.43 83.21 0.95 0.16 16 13 C -0.19 -5.15 10.10 22.14 0.22 -4.93 16 14 C -0.24 -6.69 4.68 -19.99 -0.09 -6.79 16 15 C 0.17 3.91 3.44 29.85 0.10 4.01 16 16 H 0.16 2.94 8.14 -2.38 -0.02 2.92 16 17 O -0.53 -10.91 13.17 -148.98 -1.96 -12.87 16 18 C 0.42 10.74 2.84 71.98 0.20 10.94 16 19 F -0.19 -5.73 17.02 44.97 0.77 -4.97 16 20 F -0.18 -4.58 17.26 44.97 0.78 -3.80 16 21 F -0.19 -5.05 16.51 44.97 0.74 -4.30 16 22 C 0.01 0.37 11.35 83.21 0.94 1.31 16 23 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 24 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 25 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 26 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 28 H 0.17 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.16 3.35 7.70 -2.91 -0.02 3.33 16 30 H 0.40 5.99 7.94 -74.05 -0.59 5.41 16 31 H 0.17 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -64.51 289.12 5.47 -59.04 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.57 Total: 11.60 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.71 Total: -17.21 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -1.16 Total: -71.74 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.96 Total: -12.87 kcal Atomic # 9 Polarization: -15.35 SS G_CDS: 2.28 Total: -13.07 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -64.51 5.47 -59.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132421478.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.657 kcal (2) G-P(sol) polarization free energy of solvation -64.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds