Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47090 * 269.99660 * 3 2 1 5 5 H 1.48499 * 109.47496 * 29.99469 * 3 2 1 6 6 H 1.48501 * 109.47473 * 150.00020 * 3 2 1 7 7 C 1.37874 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99864 * 173.68810 * 7 2 1 9 9 C 1.50697 * 120.00171 * 353.69357 * 7 2 1 10 10 C 1.52994 * 115.55291 * 85.64617 * 9 7 2 11 11 S 1.81399 * 109.46809 * 65.33335 * 10 9 7 12 12 C 1.76208 * 103.00095 * 179.97438 * 11 10 9 13 13 C 1.38970 * 120.08045 * 179.97438 * 12 11 10 14 14 C 1.38082 * 119.91573 * 179.97438 * 13 12 11 15 15 C 1.38306 * 120.08280 * 0.26148 * 14 13 12 16 16 C 1.50693 * 119.91859 * 179.74306 * 15 14 13 17 17 N 1.46900 * 109.47388 * 90.00061 * 16 15 14 18 18 C 1.38301 * 120.15450 * 359.48640 * 15 14 13 19 19 C 1.38081 * 120.08334 * 0.51187 * 18 15 14 20 20 C 1.53007 * 117.49518 * 231.32213 * 9 7 2 21 21 C 1.53007 * 117.49421 * 299.97892 * 9 7 2 22 22 H 0.97001 * 120.00409 * 355.02666 * 1 2 3 23 23 H 1.08998 * 109.47220 * 305.33419 * 10 9 7 24 24 H 1.09000 * 109.46993 * 185.32932 * 10 9 7 25 25 H 1.08000 * 120.04397 * 359.96325 * 13 12 11 26 26 H 1.08007 * 119.95799 * 179.97438 * 14 13 12 27 27 H 1.09003 * 109.46949 * 209.99968 * 16 15 14 28 28 H 1.09000 * 109.47677 * 329.99578 * 16 15 14 29 29 H 1.00897 * 111.00311 * 180.02562 * 17 16 15 30 30 H 1.00896 * 110.99565 * 303.95625 * 17 16 15 31 31 H 1.08004 * 119.95536 * 180.25413 * 18 15 14 32 32 H 1.08005 * 120.03710 * 179.72356 * 19 18 15 33 33 H 1.09005 * 117.49368 * 214.99999 * 20 9 7 34 34 H 1.08991 * 117.49693 * 0.02562 * 20 9 7 35 35 H 1.08997 * 117.50120 * 359.97405 * 21 9 7 36 36 H 1.09001 * 117.49684 * 144.97833 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1023 9 6 1.2579 -2.4951 0.1445 10 6 0.7095 -3.0885 -1.1547 11 16 2.0893 -3.5561 -2.2355 12 6 1.2765 -4.2088 -3.6561 13 6 2.0221 -4.6816 -4.7294 14 6 1.3817 -5.1929 -5.8407 15 6 -0.0001 -5.2299 -5.8888 16 6 -0.6952 -5.7834 -7.1059 17 7 -0.9071 -7.2269 -6.9348 18 6 -0.7451 -4.7651 -4.8204 19 6 -0.1116 -4.2524 -3.7057 20 6 1.7411 -3.4717 1.2187 21 6 0.4342 -2.6998 1.4176 22 1 -0.4851 0.8369 0.0728 23 1 0.0881 -2.3482 -1.6585 24 1 0.1113 -3.9708 -0.9271 25 1 3.1010 -4.6490 -4.6944 26 1 1.9604 -5.5602 -6.6754 27 1 -1.6577 -5.2873 -7.2316 28 1 -0.0786 -5.6086 -7.9875 29 1 -1.3717 -7.6220 -7.7386 30 1 -0.0354 -7.7011 -6.7521 31 1 -1.8239 -4.7993 -4.8597 32 1 -0.6942 -3.8855 -2.8736 33 1 1.6683 -4.5371 0.9997 34 1 2.5986 -3.1729 1.8214 35 1 0.4327 -1.8936 2.1511 36 1 -0.4985 -3.2569 1.3294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168271431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = 38.800055 kcal Electronic energy + Delta-G solvation = -16777.030016 eV Core-core repulsion = 14159.384661 eV Total energy + Delta-G solvation = -2617.645355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01117 -36.64620 -34.83744 -31.98379 -30.84961 -30.42466 -27.72808 -25.43388 -24.95986 -22.41136 -21.17484 -21.09670 -19.31884 -17.30318 -16.41806 -15.98115 -15.25088 -14.98848 -14.65794 -14.41300 -14.21552 -13.83697 -13.40287 -13.16314 -12.88180 -12.67881 -12.38652 -11.95451 -11.57049 -11.16230 -10.97984 -10.94471 -10.81547 -10.50409 -10.21932 -9.74577 -9.50585 -9.30112 -8.89594 -8.84203 -8.72310 -8.48247 -8.09429 -6.69124 -6.08980 -4.15257 1.44505 1.63051 2.26057 3.28646 3.32141 3.35984 3.39746 3.87021 4.39011 4.59532 4.85937 4.93562 5.18584 5.20125 5.27038 5.31749 5.51602 5.61164 5.82985 5.88604 6.01698 6.12675 6.23479 6.33065 6.44547 6.51338 6.61957 6.67254 6.73250 6.74151 6.90802 7.01922 7.14701 7.23424 7.32945 7.43350 7.84235 8.33193 8.87000 9.51868 11.00024 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.004640 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.306467 B = 6033.382329 C = 6297.873739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.052 3.948 10 C -0.048 4.048 11 S -0.099 6.099 12 C -0.074 4.074 13 C -0.112 4.112 14 C -0.098 4.098 15 C -0.113 4.113 16 C 0.107 3.893 17 N -0.846 5.846 18 C -0.077 4.077 19 C -0.139 4.139 20 C -0.206 4.206 21 C -0.145 4.145 22 H 0.261 0.739 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.123 0.877 26 H 0.116 0.884 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.339 0.661 30 H 0.342 0.658 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.788 -10.384 -10.869 15.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.528 4.528 8 H 0.081 0.919 9 C 0.050 3.950 10 C -0.196 4.196 11 S 0.151 5.849 12 C -0.188 4.188 13 C -0.137 4.137 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.023 4.023 17 N -0.376 5.376 18 C -0.097 4.097 19 C -0.163 4.163 20 C -0.243 4.243 21 C -0.185 4.185 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.074 0.926 25 H 0.141 0.859 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.050 0.950 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.186 -9.851 -9.964 14.013 hybrid contribution -0.462 0.759 -1.056 1.380 sum -0.648 -9.092 -11.019 14.301 Atomic orbital electron populations 1.69999 1.05896 1.26957 1.48759 1.24945 0.94786 0.98950 0.94305 0.86651 0.80045 0.83402 0.78293 1.20496 1.21204 1.19764 1.20387 0.92963 0.88457 1.50979 0.91885 1.18449 0.98456 0.94017 0.84062 1.23445 0.96129 1.01069 0.98973 1.85628 1.16043 1.72597 1.10631 1.22276 0.96519 1.00467 0.99510 1.20674 0.99410 1.00813 0.92773 1.20828 0.93747 0.99681 0.97608 1.19594 0.93358 1.02339 0.96367 1.20624 0.99375 0.88635 0.93663 1.58723 1.29579 1.03305 1.46025 1.20848 0.99406 0.96927 0.92542 1.21292 0.93345 1.02188 0.99491 1.23055 0.98577 0.95801 1.06881 1.22579 0.92238 1.01152 1.02551 0.92956 0.89016 0.92593 0.85855 0.86581 0.90463 0.94992 0.84855 0.84583 0.86222 0.85626 0.91352 0.90096 0.89654 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.29 12.90 55.43 0.71 -23.57 16 2 C 0.07 1.97 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.49 -13.07 8.49 -34.44 -0.29 -13.36 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.05 1.25 1.34 -155.66 -0.21 1.04 16 10 C -0.05 -1.06 4.19 37.15 0.16 -0.90 16 11 S -0.10 -2.01 21.62 -107.50 -2.32 -4.33 16 12 C -0.07 -1.32 6.11 -39.04 -0.24 -1.56 16 13 C -0.11 -1.74 9.79 -39.37 -0.39 -2.12 16 14 C -0.10 -1.30 9.69 -39.61 -0.38 -1.68 16 15 C -0.11 -1.48 5.40 -104.58 -0.56 -2.05 16 16 C 0.11 1.09 6.91 -4.98 -0.03 1.05 16 17 N -0.85 -7.85 9.61 -11.41 -0.11 -7.96 16 18 C -0.08 -1.13 9.69 -39.62 -0.38 -1.52 16 19 C -0.14 -2.37 9.36 -39.37 -0.37 -2.74 16 20 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 21 C -0.15 -3.31 9.40 -26.69 -0.25 -3.56 16 22 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 23 H 0.09 2.21 7.75 -51.92 -0.40 1.81 16 24 H 0.06 1.13 7.70 -51.92 -0.40 0.74 16 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 26 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 27 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 28 H 0.03 0.28 8.08 -51.93 -0.42 -0.13 16 29 H 0.34 2.33 9.08 -39.29 -0.36 1.98 16 30 H 0.34 2.97 8.98 -39.29 -0.35 2.61 16 31 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.13 2.20 5.88 -52.48 -0.31 1.89 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -28.20 319.16 -10.41 -38.62 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.17 Total: 6.68 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -3.32 Total: -30.19 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.61 Total: -31.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.32 Total: -4.33 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.20 -10.41 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168271431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.416 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds