Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47090 * 269.99660 * 3 2 1 5 5 H 1.48499 * 109.47496 * 29.99469 * 3 2 1 6 6 H 1.48501 * 109.47473 * 150.00020 * 3 2 1 7 7 C 1.37874 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99864 * 173.68810 * 7 2 1 9 9 C 1.50697 * 120.00171 * 353.69357 * 7 2 1 10 10 C 1.52994 * 115.55291 * 85.64617 * 9 7 2 11 11 S 1.81399 * 109.46809 * 65.33335 * 10 9 7 12 12 C 1.76208 * 103.00095 * 179.97438 * 11 10 9 13 13 C 1.38970 * 120.08045 * 179.97438 * 12 11 10 14 14 C 1.38082 * 119.91573 * 179.97438 * 13 12 11 15 15 C 1.38306 * 120.08280 * 0.26148 * 14 13 12 16 16 C 1.50693 * 119.91859 * 179.74306 * 15 14 13 17 17 N 1.46900 * 109.47388 * 90.00061 * 16 15 14 18 18 C 1.38301 * 120.15450 * 359.48640 * 15 14 13 19 19 C 1.38081 * 120.08334 * 0.51187 * 18 15 14 20 20 C 1.53007 * 117.49518 * 231.32213 * 9 7 2 21 21 C 1.53007 * 117.49421 * 299.97892 * 9 7 2 22 22 H 0.97001 * 120.00409 * 355.02666 * 1 2 3 23 23 H 1.08998 * 109.47220 * 305.33419 * 10 9 7 24 24 H 1.09000 * 109.46993 * 185.32932 * 10 9 7 25 25 H 1.08000 * 120.04397 * 359.96325 * 13 12 11 26 26 H 1.08007 * 119.95799 * 179.97438 * 14 13 12 27 27 H 1.09003 * 109.46949 * 209.99968 * 16 15 14 28 28 H 1.09000 * 109.47677 * 329.99578 * 16 15 14 29 29 H 1.00897 * 111.00311 * 180.02562 * 17 16 15 30 30 H 1.00896 * 110.99565 * 303.95625 * 17 16 15 31 31 H 1.08004 * 119.95536 * 180.25413 * 18 15 14 32 32 H 1.08005 * 120.03710 * 179.72356 * 19 18 15 33 33 H 1.09005 * 117.49368 * 214.99999 * 20 9 7 34 34 H 1.08991 * 117.49693 * 0.02562 * 20 9 7 35 35 H 1.08997 * 117.50120 * 359.97405 * 21 9 7 36 36 H 1.09001 * 117.49684 * 144.97833 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 -0.1023 9 6 1.2579 -2.4951 0.1445 10 6 0.7095 -3.0885 -1.1547 11 16 2.0893 -3.5561 -2.2355 12 6 1.2765 -4.2088 -3.6561 13 6 2.0221 -4.6816 -4.7294 14 6 1.3817 -5.1929 -5.8407 15 6 -0.0001 -5.2299 -5.8888 16 6 -0.6952 -5.7834 -7.1059 17 7 -0.9071 -7.2269 -6.9348 18 6 -0.7451 -4.7651 -4.8204 19 6 -0.1116 -4.2524 -3.7057 20 6 1.7411 -3.4717 1.2187 21 6 0.4342 -2.6998 1.4176 22 1 -0.4851 0.8369 0.0728 23 1 0.0881 -2.3482 -1.6585 24 1 0.1113 -3.9708 -0.9271 25 1 3.1010 -4.6490 -4.6944 26 1 1.9604 -5.5602 -6.6754 27 1 -1.6577 -5.2873 -7.2316 28 1 -0.0786 -5.6086 -7.9875 29 1 -1.3717 -7.6220 -7.7386 30 1 -0.0354 -7.7011 -6.7521 31 1 -1.8239 -4.7993 -4.8597 32 1 -0.6942 -3.8855 -2.8736 33 1 1.6683 -4.5371 0.9997 34 1 2.5986 -3.1729 1.8214 35 1 0.4327 -1.8936 2.1511 36 1 -0.4985 -3.2569 1.3294 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168271431.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = 23.550356 kcal Electronic energy + Delta-G solvation = -16777.691292 eV Core-core repulsion = 14159.384661 eV Total energy + Delta-G solvation = -2618.306632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 263.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15219 -38.48011 -35.71691 -34.02307 -32.05028 -31.48236 -29.44866 -27.42377 -25.94621 -23.61654 -22.96188 -22.18372 -21.17115 -18.73136 -17.89707 -17.25612 -16.66100 -16.34676 -16.06587 -15.78681 -15.41444 -15.35435 -14.99871 -14.34423 -14.30663 -14.07405 -13.58986 -13.39822 -13.26092 -13.00501 -12.84318 -12.37446 -12.24178 -12.05837 -11.95573 -11.58715 -11.09831 -10.80794 -10.48807 -10.47934 -9.92711 -9.91323 -9.56979 -8.21051 -8.12953 -6.24427 0.25028 0.44649 0.75638 1.39920 1.42375 1.51365 1.75008 2.42400 2.71711 3.15406 3.49033 3.82022 3.85559 4.00042 4.06361 4.12235 4.33250 4.36743 4.45466 4.55319 4.63783 4.68285 4.73453 4.87436 4.90931 4.97261 5.09941 5.20084 5.34457 5.39986 5.52848 5.59858 5.63080 5.75296 5.99626 6.23986 6.34526 6.64602 6.80226 7.44421 8.94831 Molecular weight = 263.10amu Principal moments of inertia in cm(-1) A = 0.027302 B = 0.004640 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.306467 B = 6033.382329 C = 6297.873739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.031 3.969 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.501 4.501 8 H 0.050 0.950 9 C 0.025 3.975 10 C -0.031 4.031 11 S -0.127 6.127 12 C -0.096 4.096 13 C -0.116 4.116 14 C -0.091 4.091 15 C -0.101 4.101 16 C 0.110 3.890 17 N -0.856 5.856 18 C -0.085 4.085 19 C -0.155 4.155 20 C -0.183 4.183 21 C -0.148 4.148 22 H 0.260 0.740 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.354 0.646 30 H 0.346 0.654 31 H 0.134 0.866 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.560 -11.715 -12.894 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.023 3.977 10 C -0.180 4.180 11 S 0.120 5.880 12 C -0.210 4.210 13 C -0.140 4.140 14 C -0.111 4.111 15 C -0.105 4.105 16 C -0.021 4.021 17 N -0.388 5.388 18 C -0.105 4.105 19 C -0.179 4.179 20 C -0.220 4.220 21 C -0.188 4.188 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.171 0.829 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.152 0.848 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.032 -11.201 -12.006 16.420 hybrid contribution -0.558 1.069 -0.570 1.334 sum -0.526 -10.132 -12.577 16.159 Atomic orbital electron populations 1.70089 1.06896 1.27459 1.49779 1.25573 0.95501 1.01648 0.94266 0.85792 0.79070 0.80123 0.78098 1.20541 1.20698 1.19363 1.20583 0.92589 0.90050 1.50664 0.93146 1.18548 0.99574 0.94238 0.85340 1.23076 0.96263 1.00390 0.98256 1.85458 1.16060 1.73940 1.12513 1.22222 0.96879 1.02677 0.99208 1.20926 1.00032 1.00401 0.92670 1.21214 0.94064 0.98219 0.97608 1.20026 0.93586 1.00234 0.96633 1.20625 0.99708 0.89120 0.92604 1.58660 1.30095 1.02825 1.47184 1.21080 1.00393 0.96767 0.92286 1.21295 0.93194 1.03215 1.00196 1.23038 0.97636 0.96495 1.04826 1.22511 0.93503 1.01144 1.01612 0.93064 0.92098 0.91518 0.84878 0.82901 0.89998 0.92862 0.83128 0.84100 0.84788 0.87183 0.89150 0.90074 0.91595 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.11 12.90 21.45 0.28 -50.83 16 2 C 0.03 1.68 5.39 84.65 0.46 2.14 16 3 Si 0.94 43.63 29.55 68.60 2.03 45.66 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.50 -27.30 8.49 25.60 0.22 -27.08 16 8 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 9 C 0.02 1.21 1.34 -52.93 -0.07 1.13 16 10 C -0.03 -1.42 4.19 71.98 0.30 -1.12 16 11 S -0.13 -5.28 21.62 -56.49 -1.22 -6.50 16 12 C -0.10 -3.44 6.11 22.62 0.14 -3.31 16 13 C -0.12 -3.41 9.79 22.41 0.22 -3.19 16 14 C -0.09 -2.11 9.69 22.25 0.22 -1.89 16 15 C -0.10 -2.37 5.40 -19.84 -0.11 -2.48 16 16 C 0.11 1.81 6.91 85.55 0.59 2.40 16 17 N -0.86 -12.84 9.61 -190.01 -1.83 -14.67 16 18 C -0.09 -2.39 9.69 22.25 0.22 -2.18 16 19 C -0.15 -5.32 9.36 22.41 0.21 -5.11 16 20 C -0.18 -7.78 9.96 30.62 0.30 -7.47 16 21 C -0.15 -6.80 9.40 30.62 0.29 -6.52 16 22 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 23 H 0.06 3.08 7.75 -2.39 -0.02 3.06 16 24 H 0.07 2.78 7.70 -2.39 -0.02 2.76 16 25 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 26 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 27 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 28 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 29 H 0.35 3.62 9.08 -89.70 -0.81 2.80 16 30 H 0.35 4.76 8.98 -89.70 -0.81 3.95 16 31 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.11 4.03 5.88 -2.91 -0.02 4.01 16 33 H 0.09 3.43 8.14 -2.38 -0.02 3.41 16 34 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.07 3.25 8.14 -2.39 -0.02 3.24 16 36 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -61.10 319.16 1.70 -59.40 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.53 Total: 21.61 kcal Atomic # 6 Polarization: -57.65 SS G_CDS: 2.98 Total: -54.67 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -1.55 Total: -65.50 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -5.28 SS G_CDS: -1.22 Total: -6.50 kcal Total: -61.10 1.70 -59.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168271431.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.947 kcal (2) G-P(sol) polarization free energy of solvation -61.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds