Wall clock time and date at job start Mon Mar 30 2020 06:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39924 * 119.99940 * 180.02562 * 11 10 9 13 13 C 1.38864 * 119.97416 * 359.97438 * 12 11 10 14 14 C 1.38295 * 120.14509 * 179.97438 * 13 12 11 15 15 C 1.38459 * 119.80981 * 0.04737 * 14 13 12 16 16 C 1.38748 * 120.18206 * 359.96413 * 15 14 13 17 17 C 1.38424 * 120.14805 * 359.74227 * 16 15 14 18 18 O 1.36479 * 119.60301 * 179.97438 * 16 15 14 19 19 C 1.42892 * 115.93760 * 68.30390 * 18 16 15 20 20 C 1.52068 * 110.77052 * 275.54294 * 19 18 16 21 21 C 1.52072 * 112.36649 * 64.81540 * 20 19 18 22 22 O 1.36585 * 120.23394 * 179.91596 * 15 14 13 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.92754 * 0.02562 * 13 12 11 30 30 H 1.08003 * 120.09856 * 180.02562 * 14 13 12 31 31 H 1.08004 * 120.16983 * 180.31407 * 17 16 15 32 32 H 1.09000 * 109.21921 * 35.87060 * 19 18 16 33 33 H 1.08995 * 109.21784 * 155.21070 * 19 18 16 34 34 H 1.09004 * 108.90109 * 185.55551 * 20 19 18 35 35 H 1.08995 * 108.90436 * 304.16795 * 20 19 18 36 36 H 1.08998 * 109.21562 * 55.52702 * 21 20 19 37 37 H 1.09001 * 109.21207 * 174.86100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2125 -6.1425 0.0024 13 6 3.6011 -6.1419 0.0018 14 6 4.2962 -7.3375 0.0027 15 6 3.6035 -8.5363 0.0033 16 6 2.2160 -8.5403 0.0037 17 6 1.5174 -7.3453 0.0089 18 8 1.5453 -9.7289 0.0037 19 6 1.6521 -10.5068 1.1975 20 6 2.9175 -11.3500 1.1803 21 6 4.1789 -10.5008 1.1967 22 8 4.2812 -9.7222 0.0025 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.5429 -4.9308 0.0020 29 1 4.1395 -5.2057 0.0014 30 1 5.3762 -7.3361 0.0027 31 1 0.4374 -7.3480 0.0143 32 1 1.6771 -9.8399 2.0593 33 1 0.7851 -11.1625 1.2772 34 1 2.9193 -12.0019 2.0540 35 1 2.9195 -11.9655 0.2808 36 1 4.1515 -9.8342 2.0586 37 1 5.0490 -11.1526 1.2756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020043377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:49 Heat of formation + Delta-G solvation = -58.200301 kcal Electronic energy + Delta-G solvation = -19154.941316 eV Core-core repulsion = 16090.336839 eV Total energy + Delta-G solvation = -3064.604477 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.67686 -38.18425 -37.33035 -35.24231 -33.21801 -32.43437 -30.68517 -29.49401 -27.42978 -26.44014 -24.43611 -23.02000 -21.70027 -21.43216 -20.53154 -18.42070 -17.21182 -16.89961 -16.30217 -15.82395 -15.36310 -15.25257 -14.56193 -14.34435 -14.10991 -14.07235 -13.78549 -13.56302 -13.33934 -12.68750 -12.26910 -12.16345 -11.79287 -11.36071 -11.13489 -11.06422 -10.90415 -10.66760 -10.46346 -10.43574 -9.88564 -9.62968 -9.34734 -9.33645 -8.58740 -8.47033 -6.99603 -6.13317 -4.17027 1.37076 1.57288 3.25969 3.32369 3.35038 3.43084 3.57695 3.90380 4.18820 4.39466 4.49907 4.60450 4.95871 5.01631 5.13679 5.19730 5.23709 5.39010 5.42354 5.43111 5.60268 5.68576 5.78512 5.91853 6.12145 6.21969 6.22869 6.49623 6.55957 6.60974 6.68133 7.20210 7.38757 7.57359 7.65607 7.75621 7.88330 8.08693 8.27970 8.88852 9.48102 10.98274 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049682 B = 0.003321 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.447290 B = 8429.186973 C = 8836.365113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.734 5.734 12 C 0.239 3.761 13 C -0.194 4.194 14 C -0.063 4.063 15 C -0.015 4.015 16 C 0.114 3.886 17 C -0.207 4.207 18 O -0.323 6.323 19 C 0.062 3.938 20 C -0.185 4.185 21 C 0.057 3.943 22 O -0.318 6.318 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.399 0.601 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.478 -19.974 3.811 21.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.360 5.360 12 C 0.131 3.869 13 C -0.217 4.217 14 C -0.082 4.082 15 C -0.061 4.061 16 C 0.070 3.930 17 C -0.230 4.230 18 O -0.240 6.240 19 C -0.013 4.013 20 C -0.223 4.223 21 C -0.019 4.019 22 O -0.234 6.234 23 H 0.072 0.928 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.234 0.766 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.431 -19.788 3.531 20.821 hybrid contribution -0.031 0.918 0.332 0.976 sum 5.399 -18.870 3.862 20.003 Atomic orbital electron populations 1.69954 1.06128 1.26946 1.50118 1.25006 0.94888 0.99455 0.94941 0.86513 0.79796 0.83020 0.78223 1.20527 1.21147 1.19731 1.21030 0.93137 0.90406 1.51669 0.92291 1.19283 0.94253 0.90981 0.97929 1.21752 0.96390 0.82116 0.99691 1.45344 1.08619 1.03017 1.78981 1.17806 0.91433 0.86119 0.91503 1.20645 0.92236 0.98327 1.10488 1.20765 0.99858 0.90174 0.97450 1.18742 0.89239 0.85985 1.12148 1.18742 0.89269 0.85319 0.99679 1.20407 1.00044 0.89569 1.13008 1.86318 1.70955 1.29493 1.37202 1.22554 0.98156 0.93903 0.86652 1.22456 0.95767 1.00087 1.03970 1.22572 0.97805 0.94072 0.87444 1.86420 1.70476 1.29926 1.36592 0.92779 0.95926 0.95958 0.93033 0.93093 0.76626 0.84986 0.85268 0.85287 0.92509 0.88281 0.89694 0.90114 0.92773 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.16 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.42 4.85 -4.04 -0.02 2.40 16 11 N -0.73 -12.61 5.74 -58.57 -0.34 -12.95 16 12 C 0.24 3.86 6.66 -83.68 -0.56 3.30 16 13 C -0.19 -2.96 9.31 -39.33 -0.37 -3.33 16 14 C -0.06 -0.90 10.00 -39.48 -0.39 -1.29 16 15 C -0.02 -0.23 5.73 -39.31 -0.23 -0.46 16 16 C 0.11 1.75 5.73 -39.32 -0.23 1.52 16 17 C -0.21 -3.15 9.85 -39.26 -0.39 -3.54 16 18 O -0.32 -4.64 10.16 -36.75 -0.37 -5.01 16 19 C 0.06 0.63 6.51 36.68 0.24 0.87 16 20 C -0.18 -1.61 5.93 -27.68 -0.16 -1.78 16 21 C 0.06 0.57 6.51 36.68 0.24 0.81 16 22 O -0.32 -4.47 10.17 -37.09 -0.38 -4.85 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 1.01 7.95 -51.93 -0.41 0.60 16 27 H 0.05 0.99 7.95 -51.93 -0.41 0.57 16 28 H 0.40 6.52 8.49 -40.82 -0.35 6.17 16 29 H 0.13 1.95 6.72 -52.49 -0.35 1.60 16 30 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 32 H 0.06 0.56 7.93 -51.93 -0.41 0.14 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 308.92 15.07 4.66 4.66 Total: -1.00 -30.30 308.92 -8.40 -38.70 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.27 Total: 2.96 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.41 Total: -14.25 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.40 Total: -38.18 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.75 Total: -9.86 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.30 -8.40 -38.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.497 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds