Wall clock time and date at job start Mon Mar 30 2020 06:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 7 12 12 C 1.39924 * 119.99940 * 180.02562 * 11 10 9 13 13 C 1.38864 * 119.97416 * 359.97438 * 12 11 10 14 14 C 1.38295 * 120.14509 * 179.97438 * 13 12 11 15 15 C 1.38459 * 119.80981 * 0.04737 * 14 13 12 16 16 C 1.38748 * 120.18206 * 359.96413 * 15 14 13 17 17 C 1.38424 * 120.14805 * 359.74227 * 16 15 14 18 18 O 1.36479 * 119.60301 * 179.97438 * 16 15 14 19 19 C 1.42892 * 115.93760 * 68.30390 * 18 16 15 20 20 C 1.52068 * 110.77052 * 275.54294 * 19 18 16 21 21 C 1.52072 * 112.36649 * 64.81540 * 20 19 18 22 22 O 1.36585 * 120.23394 * 179.91596 * 15 14 13 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.92754 * 0.02562 * 13 12 11 30 30 H 1.08003 * 120.09856 * 180.02562 * 14 13 12 31 31 H 1.08004 * 120.16983 * 180.31407 * 17 16 15 32 32 H 1.09000 * 109.21921 * 35.87060 * 19 18 16 33 33 H 1.08995 * 109.21784 * 155.21070 * 19 18 16 34 34 H 1.09004 * 108.90109 * 185.55551 * 20 19 18 35 35 H 1.08995 * 108.90436 * 304.16795 * 20 19 18 36 36 H 1.08998 * 109.21562 * 55.52702 * 21 20 19 37 37 H 1.09001 * 109.21207 * 174.86100 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.2125 -6.1425 0.0024 13 6 3.6011 -6.1419 0.0018 14 6 4.2962 -7.3375 0.0027 15 6 3.6035 -8.5363 0.0033 16 6 2.2160 -8.5403 0.0037 17 6 1.5174 -7.3453 0.0089 18 8 1.5453 -9.7289 0.0037 19 6 1.6521 -10.5068 1.1975 20 6 2.9175 -11.3500 1.1803 21 6 4.1789 -10.5008 1.1967 22 8 4.2812 -9.7222 0.0025 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.5429 -4.9308 0.0020 29 1 4.1395 -5.2057 0.0014 30 1 5.3762 -7.3361 0.0027 31 1 0.4374 -7.3480 0.0143 32 1 1.6771 -9.8399 2.0593 33 1 0.7851 -11.1625 1.2772 34 1 2.9193 -12.0019 2.0540 35 1 2.9195 -11.9655 0.2808 36 1 4.1515 -9.8342 2.0586 37 1 5.0490 -11.1526 1.2756 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020043377.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:48 Heat of formation + Delta-G solvation = -76.652295 kcal Electronic energy + Delta-G solvation = -19155.741454 eV Core-core repulsion = 16090.336839 eV Total energy + Delta-G solvation = -3065.404616 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72401 -39.36062 -38.34475 -36.66630 -34.96590 -33.50124 -32.10861 -30.90773 -28.71688 -27.45841 -26.14333 -24.22830 -22.99757 -22.47688 -21.91252 -19.47073 -18.66256 -18.17125 -17.76071 -17.10204 -16.40129 -16.33375 -16.26245 -15.81252 -15.48912 -15.02410 -14.86812 -14.64625 -14.36028 -14.17975 -13.73596 -13.54422 -13.20583 -12.85075 -12.68480 -12.47165 -12.21405 -12.12421 -11.74581 -11.56199 -11.37728 -11.29971 -10.92838 -10.64985 -10.50776 -9.72178 -8.26594 -8.23803 -6.34832 0.23337 0.42278 1.42593 1.43162 1.54357 2.29486 2.42896 2.57109 2.69313 3.07030 3.11452 3.78209 3.82273 3.96775 4.23549 4.27465 4.33605 4.39132 4.42371 4.44997 4.55172 4.56964 4.72886 4.82277 4.88958 4.95271 5.02501 5.12797 5.32092 5.37749 5.42942 5.50957 5.59624 5.75068 6.11395 6.22248 6.36621 6.67576 6.78801 6.85915 7.35162 8.88507 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049682 B = 0.003321 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.447290 B = 8429.186973 C = 8836.365113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.020 3.980 10 C 0.145 3.855 11 N -0.740 5.740 12 C 0.224 3.776 13 C -0.200 4.200 14 C -0.062 4.062 15 C -0.016 4.016 16 C 0.107 3.893 17 C -0.210 4.210 18 O -0.343 6.343 19 C 0.051 3.949 20 C -0.180 4.180 21 C 0.046 3.954 22 O -0.336 6.336 23 H 0.264 0.736 24 H -0.001 1.001 25 H 0.000 1.000 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.401 0.599 29 H 0.135 0.865 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.058 0.942 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 -21.122 4.436 22.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.018 4.018 10 C 0.021 3.979 11 N -0.367 5.367 12 C 0.118 3.882 13 C -0.222 4.222 14 C -0.081 4.081 15 C -0.061 4.061 16 C 0.062 3.938 17 C -0.233 4.233 18 O -0.260 6.260 19 C -0.023 4.023 20 C -0.218 4.218 21 C -0.028 4.028 22 O -0.253 6.253 23 H 0.073 0.927 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.235 0.765 29 H 0.153 0.847 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.998 -20.983 4.164 22.508 hybrid contribution -0.513 1.077 0.170 1.204 sum 6.485 -19.907 4.333 21.380 Atomic orbital electron populations 1.70083 1.07825 1.27948 1.51269 1.25949 0.95745 1.03402 0.94520 0.85412 0.78725 0.78245 0.78471 1.19872 1.20941 1.18459 1.21510 0.93835 0.91630 1.51128 0.91464 1.19117 0.94532 0.92462 0.95671 1.21298 0.94988 0.81639 0.99929 1.45085 1.08572 1.02641 1.80368 1.17902 0.91872 0.85712 0.92696 1.20768 0.91966 0.98989 1.10515 1.20969 1.00948 0.89517 0.96714 1.18927 0.89292 0.86728 1.11198 1.18872 0.89629 0.85712 0.99581 1.20487 1.00465 0.89488 1.12887 1.86277 1.71108 1.29331 1.39275 1.22913 1.00159 0.94017 0.85232 1.22445 0.94254 0.99804 1.05287 1.22907 0.99703 0.94182 0.86018 1.86370 1.70413 1.29775 1.38764 0.92680 0.98269 0.98114 0.92888 0.92685 0.76460 0.84682 0.83092 0.84702 0.92312 0.85907 0.86170 0.90758 0.92446 0.86032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.02 0.98 5.09 29.85 0.15 1.14 16 10 C 0.15 5.74 4.85 86.38 0.42 6.16 16 11 N -0.74 -25.70 5.74 -339.23 -1.95 -27.65 16 12 C 0.22 7.18 6.66 38.16 0.25 7.43 16 13 C -0.20 -5.93 9.31 22.43 0.21 -5.72 16 14 C -0.06 -1.69 10.00 22.34 0.22 -1.46 16 15 C -0.02 -0.45 5.73 22.44 0.13 -0.32 16 16 C 0.11 3.17 5.73 22.44 0.13 3.30 16 17 C -0.21 -6.36 9.85 22.48 0.22 -6.14 16 18 O -0.34 -9.47 10.16 -84.29 -0.86 -10.33 16 19 C 0.05 0.93 6.51 71.67 0.47 1.39 16 20 C -0.18 -2.64 5.93 29.98 0.18 -2.46 16 21 C 0.05 0.81 6.51 71.68 0.47 1.28 16 22 O -0.34 -8.88 10.17 -85.54 -0.87 -9.75 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 26 H 0.05 2.07 7.95 -2.39 -0.02 2.05 16 27 H 0.05 2.12 7.95 -2.39 -0.02 2.10 16 28 H 0.40 13.47 8.49 -92.71 -0.79 12.69 16 29 H 0.14 3.87 6.72 -2.91 -0.02 3.85 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 32 H 0.06 1.04 7.93 -2.39 -0.02 1.02 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 0.97 7.93 -2.39 -0.02 0.95 16 37 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -65.04 308.92 2.46 -62.58 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.28 Total: 19.18 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 3.54 Total: -24.13 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.66 Total: -82.51 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -1.73 Total: -20.07 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -65.04 2.46 -62.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020043377.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.072 kcal (2) G-P(sol) polarization free energy of solvation -65.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds