Wall clock time and date at job start Mon Mar 30 2020 06:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86803 * 120.00127 * 2 1 4 4 H 1.48500 * 109.46732 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46820 * 119.99812 * 3 2 1 6 6 H 1.48493 * 109.46807 * 239.99555 * 3 2 1 7 7 C 1.38629 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99831 * 179.97438 * 7 2 1 9 9 O 1.34808 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.35795 * 116.99734 * 174.94208 * 9 7 2 11 11 C 1.38901 * 119.99550 * 185.26825 * 10 9 7 12 12 C 1.38010 * 120.00767 * 179.76531 * 11 10 9 13 13 C 1.38959 * 119.99257 * 0.51011 * 12 11 10 14 14 N 1.39783 * 120.00318 * 179.72252 * 13 12 11 15 15 C 1.46492 * 120.00395 * 0.02562 * 14 13 12 16 16 C 1.52993 * 109.47238 * 180.02562 * 15 14 13 17 17 H 1.09002 * 110.80669 * 308.62427 * 16 15 14 18 18 C 1.54809 * 110.90944 * 184.99977 * 16 15 14 19 19 C 1.54096 * 104.19124 * 220.91982 * 18 16 15 20 20 O 1.43747 * 107.29225 * 357.96923 * 19 18 16 21 21 C 1.44379 * 106.97538 * 26.51153 * 20 19 18 22 22 C 1.38950 * 119.98692 * 359.74097 * 13 12 11 23 23 C 1.38009 * 119.99457 * 0.02562 * 22 13 12 24 24 H 0.96998 * 119.99837 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99537 * 359.97438 * 11 10 9 26 26 H 1.07993 * 120.00769 * 180.25574 * 12 11 10 27 27 H 0.97005 * 119.99162 * 180.02562 * 14 13 12 28 28 H 1.09001 * 109.46964 * 300.00207 * 15 14 13 29 29 H 1.08999 * 109.47298 * 59.99980 * 15 14 13 30 30 H 1.09002 * 110.48620 * 339.59515 * 18 16 15 31 31 H 1.09008 * 110.48895 * 102.24291 * 18 16 15 32 32 H 1.08999 * 109.88358 * 117.39309 * 19 18 16 33 33 H 1.09002 * 109.87946 * 238.54911 * 19 18 16 34 34 H 1.08997 * 110.62048 * 201.44278 * 21 20 19 35 35 H 1.09000 * 110.61426 * 78.43920 * 21 20 19 36 36 H 1.07998 * 120.00012 * 179.97438 * 22 13 12 37 37 H 1.08000 * 119.99933 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 1.2848 2.7464 -0.0006 5 1 3.1036 1.6963 1.2125 6 1 3.1037 1.6963 -1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3680 0.0005 10 6 2.0704 -3.5046 -0.1056 11 6 1.4353 -4.7344 -0.2222 12 6 2.1825 -5.8892 -0.3350 13 6 3.5705 -5.8225 -0.3212 14 7 4.3275 -6.9926 -0.4295 15 6 3.6579 -8.2891 -0.5582 16 6 4.7076 -9.3976 -0.6583 17 1 5.4408 -9.1679 -1.4315 18 6 4.0394 -10.7692 -0.9208 19 6 4.8237 -11.7488 -0.0264 20 8 5.8595 -10.9957 0.6264 21 6 5.3991 -9.6298 0.7093 22 6 4.2055 -4.5927 -0.1993 23 6 3.4578 -3.4377 -0.0914 24 1 -0.4850 0.8400 -0.0004 25 1 0.3566 -4.7866 -0.2280 26 1 1.6888 -6.8449 -0.4298 27 1 5.2964 -6.9459 -0.4195 28 1 3.0297 -8.4619 0.3157 29 1 3.0398 -8.2913 -1.4560 30 1 2.9893 -10.7439 -0.6296 31 1 4.1388 -11.0475 -1.9701 32 1 4.1578 -12.1855 0.7179 33 1 5.2664 -12.5353 -0.6376 34 1 6.2403 -8.9481 0.8345 35 1 4.6853 -9.5142 1.5248 36 1 5.2842 -4.5407 -0.1881 37 1 3.9513 -2.4818 0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020126537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:52 Heat of formation + Delta-G solvation = -46.701658 kcal Electronic energy + Delta-G solvation = -18822.709143 eV Core-core repulsion = 15758.603285 eV Total energy + Delta-G solvation = -3064.105858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.82893 -38.94410 -37.08958 -34.90546 -32.49791 -31.87517 -30.22682 -29.70741 -27.36042 -25.65235 -24.58895 -22.79292 -22.09392 -20.73080 -20.60502 -17.83086 -17.20330 -16.76122 -16.60594 -15.67817 -15.48185 -14.97617 -14.45515 -14.38391 -13.82260 -13.61495 -13.54430 -13.35704 -12.80965 -12.58436 -12.43143 -11.97504 -11.76257 -11.61671 -11.53606 -11.17172 -11.11572 -10.99228 -10.83656 -10.59005 -10.36156 -9.98213 -9.24066 -9.18294 -8.44967 -8.17565 -6.41609 -6.32259 -3.89598 2.19868 2.56667 3.18909 3.20075 3.22602 3.57434 3.77272 4.06218 4.27265 4.43458 4.59661 4.68344 4.79121 4.97156 5.08551 5.20025 5.33340 5.40686 5.41112 5.48455 5.50913 5.59484 5.65609 5.71669 5.77891 5.89429 6.20935 6.23494 6.53223 6.54827 6.85609 6.89772 7.12792 7.31630 7.44243 7.63225 7.95724 8.12051 8.21062 9.13580 9.87926 10.86456 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.059435 B = 0.003126 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.991570 B = 8954.060940 C = 9277.661287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.036 3.964 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.388 4.388 8 H 0.088 0.912 9 O -0.188 6.188 10 C 0.114 3.886 11 C -0.151 4.151 12 C -0.145 4.145 13 C 0.122 3.878 14 N -0.761 5.761 15 C 0.145 3.855 16 C -0.132 4.132 17 H 0.090 0.910 18 C -0.149 4.149 19 C 0.047 3.953 20 O -0.381 6.381 21 C 0.052 3.948 22 C -0.141 4.141 23 C -0.190 4.190 24 H 0.268 0.732 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.390 0.610 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -18.306 -1.306 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.167 4.167 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.105 0.895 9 O -0.093 6.093 10 C 0.061 3.939 11 C -0.171 4.171 12 C -0.167 4.167 13 C 0.024 3.976 14 N -0.397 5.397 15 C 0.020 3.980 16 C -0.151 4.151 17 H 0.108 0.892 18 C -0.187 4.187 19 C -0.030 4.030 20 O -0.300 6.300 21 C -0.024 4.024 22 C -0.163 4.163 23 C -0.210 4.210 24 H 0.078 0.922 25 H 0.135 0.865 26 H 0.128 0.872 27 H 0.224 0.776 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.354 -18.297 -1.216 20.150 hybrid contribution 0.667 0.916 -0.129 1.140 sum 9.021 -17.381 -1.345 19.628 Atomic orbital electron populations 1.70040 1.05847 1.27396 1.47297 1.25217 0.95797 0.98612 0.97034 0.85836 0.78668 0.80190 0.79020 1.20415 1.19667 1.19680 1.21190 0.91561 0.81130 1.52566 0.89496 1.83985 1.33805 1.11119 1.80375 1.19246 0.90148 0.88234 0.96224 1.20022 0.99295 0.89980 1.07804 1.20163 0.91569 0.97286 1.07694 1.17381 0.90678 0.85809 1.03738 1.44178 1.06854 1.02708 1.86003 1.21052 0.94010 0.82209 1.00730 1.22949 0.98465 0.94951 0.98771 0.89158 1.22932 1.00646 0.93926 1.01227 1.23153 0.90043 0.94790 0.95034 1.88871 1.40906 1.20257 1.80011 1.23655 0.99239 0.83380 0.96124 1.20234 0.98203 0.90989 1.06873 1.20995 0.93729 0.98294 1.07998 0.92239 0.86526 0.87227 0.77650 0.92740 0.92623 0.90111 0.90169 0.92325 0.89932 0.88890 0.91692 0.87625 0.85492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.07 13.67 55.48 0.76 -25.31 16 2 C 0.04 1.02 5.49 -17.51 -0.10 0.93 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.92 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.39 -11.05 9.48 30.88 0.29 -10.76 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.19 -5.47 9.76 -0.03 0.00 -5.47 16 10 C 0.11 2.80 6.65 -39.09 -0.26 2.54 16 11 C -0.15 -3.23 9.98 -39.42 -0.39 -3.62 16 12 C -0.14 -2.61 9.31 -39.40 -0.37 -2.97 16 13 C 0.12 2.07 6.66 -83.70 -0.56 1.51 16 14 N -0.76 -9.76 5.67 -58.59 -0.33 -10.09 16 15 C 0.15 1.52 4.25 -4.05 -0.02 1.50 16 16 C -0.13 -1.12 3.13 -88.62 -0.28 -1.40 16 17 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 18 C -0.15 -1.06 6.60 -25.21 -0.17 -1.22 16 19 C 0.05 0.36 7.70 37.73 0.29 0.65 16 20 O -0.38 -4.05 11.52 -35.23 -0.41 -4.45 16 21 C 0.05 0.48 7.11 38.21 0.27 0.76 16 22 C -0.14 -2.59 9.89 -39.40 -0.39 -2.98 16 23 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 26 H 0.11 1.67 6.73 -52.49 -0.35 1.32 16 27 H 0.39 4.37 8.49 -40.82 -0.35 4.02 16 28 H 0.05 0.58 7.78 -51.93 -0.40 0.18 16 29 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 30 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 2.79 5.63 -52.49 -0.30 2.49 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -31.93 309.60 -7.37 -39.30 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.00 Total: 5.04 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.03 Total: -19.60 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.43 Total: -35.40 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.41 Total: -9.93 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.93 -7.37 -39.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.404 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds