Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86803 * 120.00127 * 2 1 4 4 H 1.48500 * 109.46732 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46820 * 119.99812 * 3 2 1 6 6 H 1.48493 * 109.46807 * 239.99555 * 3 2 1 7 7 C 1.38629 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99831 * 179.97438 * 7 2 1 9 9 O 1.34808 * 119.99795 * 0.02562 * 7 2 1 10 10 C 1.35795 * 116.99734 * 174.94208 * 9 7 2 11 11 C 1.38901 * 119.99550 * 185.26825 * 10 9 7 12 12 C 1.38010 * 120.00767 * 179.76531 * 11 10 9 13 13 C 1.38959 * 119.99257 * 0.51011 * 12 11 10 14 14 N 1.39783 * 120.00318 * 179.72252 * 13 12 11 15 15 C 1.46492 * 120.00395 * 0.02562 * 14 13 12 16 16 C 1.52993 * 109.47238 * 180.02562 * 15 14 13 17 17 H 1.09002 * 110.80669 * 308.62427 * 16 15 14 18 18 C 1.54809 * 110.90944 * 184.99977 * 16 15 14 19 19 C 1.54096 * 104.19124 * 220.91982 * 18 16 15 20 20 O 1.43747 * 107.29225 * 357.96923 * 19 18 16 21 21 C 1.44379 * 106.97538 * 26.51153 * 20 19 18 22 22 C 1.38950 * 119.98692 * 359.74097 * 13 12 11 23 23 C 1.38009 * 119.99457 * 0.02562 * 22 13 12 24 24 H 0.96998 * 119.99837 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99537 * 359.97438 * 11 10 9 26 26 H 1.07993 * 120.00769 * 180.25574 * 12 11 10 27 27 H 0.97005 * 119.99162 * 180.02562 * 14 13 12 28 28 H 1.09001 * 109.46964 * 300.00207 * 15 14 13 29 29 H 1.08999 * 109.47298 * 59.99980 * 15 14 13 30 30 H 1.09002 * 110.48620 * 339.59515 * 18 16 15 31 31 H 1.09008 * 110.48895 * 102.24291 * 18 16 15 32 32 H 1.08999 * 109.88358 * 117.39309 * 19 18 16 33 33 H 1.09002 * 109.87946 * 238.54911 * 19 18 16 34 34 H 1.08997 * 110.62048 * 201.44278 * 21 20 19 35 35 H 1.09000 * 110.61426 * 78.43920 * 21 20 19 36 36 H 1.07998 * 120.00012 * 179.97438 * 22 13 12 37 37 H 1.08000 * 119.99933 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 1.2848 2.7464 -0.0006 5 1 3.1036 1.6963 1.2125 6 1 3.1037 1.6963 -1.2124 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3680 0.0005 10 6 2.0704 -3.5046 -0.1056 11 6 1.4353 -4.7344 -0.2222 12 6 2.1825 -5.8892 -0.3350 13 6 3.5705 -5.8225 -0.3212 14 7 4.3275 -6.9926 -0.4295 15 6 3.6579 -8.2891 -0.5582 16 6 4.7076 -9.3976 -0.6583 17 1 5.4408 -9.1679 -1.4315 18 6 4.0394 -10.7692 -0.9208 19 6 4.8237 -11.7488 -0.0264 20 8 5.8595 -10.9957 0.6264 21 6 5.3991 -9.6298 0.7093 22 6 4.2055 -4.5927 -0.1993 23 6 3.4578 -3.4377 -0.0914 24 1 -0.4850 0.8400 -0.0004 25 1 0.3566 -4.7866 -0.2280 26 1 1.6888 -6.8449 -0.4298 27 1 5.2964 -6.9459 -0.4195 28 1 3.0297 -8.4619 0.3157 29 1 3.0398 -8.2913 -1.4560 30 1 2.9893 -10.7439 -0.6296 31 1 4.1388 -11.0475 -1.9701 32 1 4.1578 -12.1855 0.7179 33 1 5.2664 -12.5353 -0.6376 34 1 6.2403 -8.9481 0.8345 35 1 4.6853 -9.5142 1.5248 36 1 5.2842 -4.5407 -0.1881 37 1 3.9513 -2.4818 0.0038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020126537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -68.497401 kcal Electronic energy + Delta-G solvation = -18823.654277 eV Core-core repulsion = 15758.603285 eV Total energy + Delta-G solvation = -3065.050993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.80514 -40.35194 -38.67315 -36.14903 -34.19534 -33.16661 -31.79162 -30.52033 -28.71630 -27.33702 -25.92556 -23.76528 -23.31586 -22.22967 -21.47560 -19.66241 -18.85204 -17.86327 -17.58035 -16.76697 -16.35987 -16.20728 -16.12345 -15.46161 -15.26780 -15.16744 -15.04977 -14.34282 -14.21449 -14.05814 -13.56764 -13.42356 -13.14443 -12.97192 -12.59432 -12.48690 -12.29693 -12.18176 -12.10815 -11.84988 -11.57678 -11.08761 -10.89232 -10.65321 -10.16772 -9.76356 -8.38745 -7.93064 -6.02439 0.59759 0.94260 1.37044 1.48313 1.53193 2.23354 2.60887 2.92230 3.00989 3.26402 3.59167 3.68731 3.79222 3.92243 4.14292 4.19224 4.21744 4.32823 4.39083 4.58260 4.63832 4.70175 4.76836 4.82726 4.88523 4.92749 4.96488 5.09381 5.13908 5.23718 5.29342 5.48355 5.55808 5.79687 5.90703 5.99201 6.12137 6.61127 7.02974 7.07390 7.94147 8.85654 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.059435 B = 0.003126 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.991570 B = 8954.060940 C = 9277.661287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.016 2.984 4 H -0.273 1.273 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.407 4.407 8 H 0.098 0.902 9 O -0.243 6.243 10 C 0.062 3.938 11 C -0.157 4.157 12 C -0.145 4.145 13 C 0.152 3.848 14 N -0.747 5.747 15 C 0.141 3.859 16 C -0.123 4.123 17 H 0.094 0.906 18 C -0.145 4.145 19 C 0.040 3.960 20 O -0.405 6.405 21 C 0.049 3.951 22 C -0.145 4.145 23 C -0.194 4.194 24 H 0.270 0.730 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.403 0.597 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.139 0.861 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.984 -20.364 -1.821 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.225 4.225 3 Si 0.836 3.164 4 H -0.198 1.198 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.116 0.884 9 O -0.151 6.151 10 C 0.012 3.988 11 C -0.176 4.176 12 C -0.167 4.167 13 C 0.051 3.949 14 N -0.382 5.382 15 C 0.017 3.983 16 C -0.142 4.142 17 H 0.113 0.887 18 C -0.183 4.183 19 C -0.036 4.036 20 O -0.325 6.325 21 C -0.027 4.027 22 C -0.167 4.167 23 C -0.214 4.214 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.161 0.839 27 H 0.238 0.762 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.157 0.843 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 10.645 -20.451 -1.738 23.121 hybrid contribution 0.108 1.123 0.016 1.128 sum 10.752 -19.328 -1.721 22.185 Atomic orbital electron populations 1.70199 1.07966 1.28483 1.50070 1.26531 0.96838 1.02630 0.96458 0.84681 0.77350 0.74567 0.79811 1.19808 1.18245 1.18291 1.21721 0.92346 0.81807 1.52489 0.88437 1.83932 1.35537 1.12313 1.83297 1.19756 0.91511 0.88041 0.99488 1.20243 0.99630 0.90208 1.07567 1.20443 0.92071 0.97356 1.06813 1.17509 0.90695 0.86890 0.99831 1.44293 1.07498 1.02297 1.84091 1.21236 0.94653 0.81269 1.01146 1.22843 0.97951 0.94905 0.98479 0.88735 1.22940 1.00823 0.92638 1.01889 1.23334 0.89852 0.95040 0.95417 1.88852 1.42165 1.20965 1.80506 1.23710 0.99415 0.83169 0.96430 1.20507 0.99730 0.90227 1.06265 1.21063 0.92956 0.99435 1.07965 0.92144 0.86938 0.83878 0.76184 0.92340 0.91997 0.89286 0.88899 0.91751 0.88804 0.88560 0.91999 0.84286 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.47 13.67 21.61 0.30 -58.17 16 2 C -0.03 -1.66 5.49 84.82 0.47 -1.19 16 3 Si 1.02 43.94 29.55 68.60 2.03 45.97 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 7 C -0.41 -24.32 9.48 67.91 0.64 -23.68 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.24 -15.01 9.76 -23.02 -0.22 -15.24 16 10 C 0.06 3.13 6.65 22.59 0.15 3.28 16 11 C -0.16 -6.77 9.98 22.37 0.22 -6.55 16 12 C -0.14 -4.87 9.31 22.39 0.21 -4.66 16 13 C 0.15 4.67 6.66 38.22 0.25 4.92 16 14 N -0.75 -15.96 5.67 -339.27 -1.92 -17.89 16 15 C 0.14 2.35 4.25 86.38 0.37 2.72 16 16 C -0.12 -1.62 3.13 -9.50 -0.03 -1.65 16 17 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 18 C -0.14 -1.52 6.60 31.58 0.21 -1.31 16 19 C 0.04 0.51 7.70 72.35 0.56 1.06 16 20 O -0.41 -7.63 11.52 -148.98 -1.72 -9.34 16 21 C 0.05 0.76 7.11 72.66 0.52 1.28 16 22 C -0.15 -4.99 9.89 22.39 0.22 -4.77 16 23 C -0.19 -8.59 9.16 22.38 0.20 -8.38 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 26 H 0.14 3.82 6.73 -2.91 -0.02 3.80 16 27 H 0.40 7.14 8.49 -92.70 -0.79 6.36 16 28 H 0.06 1.00 7.78 -2.39 -0.02 0.98 16 29 H 0.06 1.04 7.95 -2.39 -0.02 1.02 16 30 H 0.09 0.81 7.86 -2.39 -0.02 0.79 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 0.99 7.93 -2.39 -0.02 0.97 16 36 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.12 5.30 5.63 -2.91 -0.02 5.29 16 Total: -1.00 -73.61 309.60 2.74 -70.87 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.29 Total: 22.72 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 3.99 Total: -38.92 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.63 Total: -76.06 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -1.94 Total: -24.58 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.61 2.74 -70.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020126537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.371 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds