Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 120.00177 * 2 1 4 4 H 1.48503 * 109.47256 * 239.99757 * 3 2 1 5 5 H 1.48505 * 109.47306 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47390 * 119.99910 * 3 2 1 7 7 C 1.38652 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99636 * 359.97438 * 7 2 1 10 10 C 1.35753 * 117.00162 * 185.05709 * 9 7 2 11 11 C 1.38953 * 120.03618 * 174.48597 * 10 9 7 12 12 C 1.38128 * 120.08058 * 179.97438 * 11 10 9 13 13 C 1.38186 * 120.14291 * 359.74373 * 12 11 10 14 14 C 1.38969 * 120.06178 * 0.50824 * 13 12 11 15 15 N 1.39673 * 120.03928 * 179.76783 * 14 13 12 16 16 C 1.46498 * 120.00094 * 359.72865 * 15 14 13 17 17 C 1.53004 * 109.47136 * 180.02562 * 16 15 14 18 18 H 1.08996 * 111.02334 * 57.76359 * 17 16 15 19 19 C 1.55451 * 111.14744 * 181.91582 * 17 16 15 20 20 C 1.54381 * 102.18675 * 151.99001 * 19 17 16 21 21 O 1.43240 * 107.66222 * 338.74071 * 20 19 17 22 22 C 1.43643 * 109.97228 * 358.24437 * 21 20 19 23 23 C 1.38731 * 120.02987 * 354.46299 * 10 9 7 24 24 H 0.97004 * 119.99721 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.95738 * 359.97438 * 11 10 9 26 26 H 1.07995 * 119.92638 * 179.97438 * 12 11 10 27 27 H 1.08004 * 119.97286 * 180.27599 * 13 12 11 28 28 H 0.96999 * 119.99594 * 179.72033 * 15 14 13 29 29 H 1.08996 * 109.47650 * 59.99735 * 16 15 14 30 30 H 1.09006 * 109.46999 * 299.99533 * 16 15 14 31 31 H 1.09001 * 110.83028 * 33.84191 * 19 17 16 32 32 H 1.08998 * 110.92068 * 270.18171 * 19 17 16 33 33 H 1.08996 * 109.83144 * 219.18414 * 20 19 17 34 34 H 1.09000 * 109.83002 * 98.29800 * 20 19 17 35 35 H 1.08995 * 110.30964 * 143.34634 * 22 21 20 36 36 H 1.09007 * 110.30812 * 265.40929 * 22 21 20 37 37 H 1.07998 * 120.06399 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6963 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0698 -3.5047 0.1055 11 6 1.4353 -4.7348 0.2274 12 6 2.1825 -5.8916 0.3348 13 6 3.5628 -5.8303 0.3163 14 6 4.2037 -4.6027 0.2000 15 7 5.5989 -4.5408 0.1862 16 6 6.3878 -5.7699 0.3003 17 6 7.8780 -5.4252 0.2593 18 1 8.1402 -4.7285 1.0554 19 6 8.7526 -6.7084 0.3295 20 6 10.0281 -6.2751 -0.4245 21 8 9.6843 -5.1598 -1.2550 22 6 8.2839 -4.8666 -1.1277 23 6 3.4555 -3.4388 0.0920 24 1 -0.4850 0.8401 -0.0004 25 1 0.3566 -4.7865 0.2380 26 1 1.6867 -6.8463 0.4298 27 1 4.1443 -6.7369 0.3960 28 1 6.0455 -3.6840 0.1009 29 1 6.1456 -6.4355 -0.5282 30 1 6.1556 -6.2645 1.2435 31 1 8.2640 -7.5389 -0.1801 32 1 8.9820 -6.9670 1.3632 33 1 10.3905 -7.0974 -1.0413 34 1 10.7978 -5.9812 0.2892 35 1 8.1178 -3.7900 -1.1654 36 1 7.7201 -5.3636 -1.9173 37 1 3.9508 -2.4839 -0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037069701.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -49.864242 kcal Electronic energy + Delta-G solvation = -19078.554467 eV Core-core repulsion = 16014.311469 eV Total energy + Delta-G solvation = -3064.242998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81459 -38.95715 -37.04759 -35.05515 -32.60584 -32.10609 -30.05962 -28.96061 -27.91329 -25.32245 -25.21312 -22.56690 -21.87677 -21.00129 -20.36717 -17.88873 -17.37986 -17.02758 -16.22982 -15.35418 -15.23054 -14.95637 -14.69583 -14.20921 -14.11687 -13.75424 -13.67820 -13.45639 -12.88352 -12.73661 -12.35829 -11.90027 -11.64683 -11.57400 -11.52501 -11.14993 -11.09106 -10.85901 -10.77321 -10.57469 -10.39068 -9.78210 -9.41861 -9.37066 -8.74778 -7.34800 -6.78977 -6.39864 -3.99282 2.38474 2.57238 3.15243 3.16823 3.19037 3.53444 3.71122 4.00665 4.20922 4.45287 4.61007 4.71642 4.85913 4.95835 5.05462 5.16364 5.33479 5.37663 5.41994 5.48936 5.54849 5.64990 5.69052 5.71323 5.92591 5.98748 6.28163 6.36164 6.62941 6.65359 6.71800 7.03479 7.15907 7.39096 7.49210 7.66308 8.00361 8.06042 8.18108 9.06137 9.78603 10.78437 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020742 B = 0.004358 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.586819 B = 6422.776345 C = 7628.267706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.390 4.390 8 H 0.090 0.910 9 O -0.178 6.178 10 C 0.189 3.811 11 C -0.235 4.235 12 C -0.040 4.040 13 C -0.280 4.280 14 C 0.248 3.752 15 N -0.756 5.756 16 C 0.145 3.855 17 C -0.136 4.136 18 H 0.092 0.908 19 C -0.147 4.147 20 C 0.051 3.949 21 O -0.386 6.386 22 C 0.056 3.944 23 C -0.302 4.302 24 H 0.270 0.730 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.394 0.606 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.714 -11.410 0.896 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.135 3.865 11 C -0.256 4.256 12 C -0.059 4.059 13 C -0.303 4.303 14 C 0.147 3.853 15 N -0.388 5.388 16 C 0.020 3.980 17 C -0.154 4.154 18 H 0.111 0.889 19 C -0.186 4.186 20 C -0.026 4.026 21 O -0.306 6.306 22 C -0.020 4.020 23 C -0.326 4.326 24 H 0.079 0.921 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.121 0.879 28 H 0.228 0.772 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.473 -11.270 0.760 19.158 hybrid contribution 0.564 1.003 0.157 1.161 sum 16.037 -10.267 0.917 19.064 Atomic orbital electron populations 1.70032 1.05922 1.27642 1.46395 1.25264 0.95810 0.98746 0.96686 0.85810 0.78709 0.79972 0.79084 1.19577 1.20301 1.19602 1.21251 0.91708 0.80907 1.52780 0.89245 1.83987 1.34228 1.11466 1.78422 1.19069 0.89497 0.87847 0.90121 1.20049 0.99380 0.90362 1.15809 1.20373 0.92997 0.96530 0.96032 1.20060 0.94457 0.94983 1.20766 1.17446 0.82110 0.93587 0.92158 1.44494 1.02958 1.07656 1.83722 1.21049 0.87694 0.88117 1.01148 1.23131 0.95492 0.97962 0.98865 0.88931 1.23135 0.95554 0.97833 1.02030 1.23103 0.96889 0.89198 0.93362 1.88408 1.25166 1.50257 1.66759 1.23466 0.81593 1.01215 0.95740 1.20503 0.93758 0.97179 1.21113 0.92055 0.86900 0.87205 0.87935 0.77180 0.92367 0.92236 0.90049 0.89661 0.91446 0.91331 0.89534 0.91624 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.68 13.67 55.48 0.76 -24.92 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16 8 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 9 O -0.18 -5.18 9.76 0.03 0.00 -5.18 16 10 C 0.19 4.69 6.65 -39.13 -0.26 4.43 16 11 C -0.24 -5.15 9.99 -39.36 -0.39 -5.54 16 12 C -0.04 -0.74 10.03 -39.64 -0.40 -1.14 16 13 C -0.28 -4.95 9.31 -39.33 -0.37 -5.32 16 14 C 0.25 4.60 6.65 -83.81 -0.56 4.04 16 15 N -0.76 -10.85 5.59 -58.65 -0.33 -11.18 16 16 C 0.14 1.60 4.37 -4.04 -0.02 1.58 16 17 C -0.14 -1.24 3.16 -88.29 -0.28 -1.52 16 18 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 19 C -0.15 -1.08 6.52 -24.71 -0.16 -1.24 16 20 C 0.05 0.42 7.79 37.88 0.30 0.72 16 21 O -0.39 -4.45 11.36 -35.23 -0.40 -4.85 16 22 C 0.06 0.58 6.97 38.18 0.27 0.85 16 23 C -0.30 -6.67 9.01 -39.20 -0.35 -7.02 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 26 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.10 1.54 6.72 -52.48 -0.35 1.19 16 28 H 0.39 5.28 8.35 -40.82 -0.34 4.94 16 29 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 30 H 0.06 0.66 7.96 -51.93 -0.41 0.24 16 31 H 0.08 0.55 8.03 -51.93 -0.42 0.14 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 37 H 0.12 2.74 5.63 -52.49 -0.30 2.45 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -31.79 309.60 -7.37 -39.16 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.01 Total: 6.53 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.03 Total: -19.94 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.43 Total: -36.10 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.40 Total: -10.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.79 -7.37 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037069701.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.704 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds